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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Streptococcus thermophilus Cas9 in complex with AGGA PAM

Results of the assignment of 103 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016m0x_B_G0_G1AAAAA00550.19 AA00
0026m0x_B_G1_U2AAAAA00840.24 AA00
0036m0x_B_U2_G3AAAAA00420.32 AA00
0046m0x_B_G3_C4AAAAA00780.17 AA00
0056m0x_B_C4_U5AAAAA00670.17 AA00
0066m0x_B_U5_A6AAAAA00870.18 AA00
0076m0x_B_A6_A7AAAAA00700.19 AA00
0086m0x_B_A7_G8AAAAA00890.08 AA00
0096m0x_B_G8_A9AAwAA01680.19 AA01
0106m0x_B_A9_U10AAwAA11800.36 AA11
0116m0x_B_U10_U11NANNANT00.46 AA10
0126m0x_B_U11_A12AAAAA08510.26 AA08
0136m0x_B_A12_A13AAAAA00670.09 AA00
0146m0x_B_A13_U14AAAAA00880.16 AA00
0156m0x_B_U14_C15AAAAA00840.21 AA00
0166m0x_B_C15_A16AAAAA00870.20 AA00
0176m0x_B_A16_G17AAwAA01570.21 AA01
0186m0x_B_G17_G18AAAAA00510.30 AA00
0196m0x_B_G18_A19AAAAA08770.15 AA08
0206m0x_B_A19_U20AAwAA01460.29 AA01
0216m0x_B_U20_G21AAAAA00340.42 AA00
0226m0x_B_G21_U22AAAAA00760.21 AA00
0236m0x_B_U22_U23AAAAA08950.18 AA08
0246m0x_B_U23_U24AAAAA00730.22 AA00
0256m0x_B_U24_U25AAAAA00820.14 AA00
0266m0x_B_U25_U26AAAAA00930.14 AA00
0276m0x_B_U26_G27AAAAA00850.13 AA00
0286m0x_B_G27_U28AAAAA00840.13 AA00
0296m0x_B_U28_A29AAAAA00760.16 AA00
0306m0x_B_A29_C30AAAAA00880.17 AA00
0316m0x_B_C30_U31AAAAA00680.29 AA00
0326m0x_B_U31_C32AAAAA00920.15 AA00
0336m0x_B_C32_G33AAAAA00890.20 AA00
0346m0x_B_G33_A34OPNOP03890.16 OP03
0356m0x_B_A34_A35AAwAA06810.33 AA06
0366m0x_B_A35_A36AAAAA08790.27 AA08
0376m0x_B_A36_G37NANNANT00.97 AA10
0386m0x_B_G37_A38AAAAA00870.20 AA00
0396m0x_B_A38_A39AAAAA00620.30 AA00
0406m0x_B_A39_G40A-BAB05880.27 AB05
0416m0x_B_G40_C41NANNANT01.19 BA16
0426m0x_B_C41_U42AAAAA08660.43 AA08
0436m0x_B_U42_A43AAAAA00710.19 AA00
0446m0x_B_A43_C44AAAAA08830.22 AA08
0456m0x_B_C44_A45AAAAA00940.14 AA00
0466m0x_B_A45_A46AAAAA00900.16 AA00
0476m0x_B_A46_A47AAAAA00910.14 AA00
0486m0x_B_A47_G48AAAAA00470.22 AA00
0496m0x_B_G48_A49AAAAA00730.20 AA00
0506m0x_B_A49_U50AAAAA00880.30 AA00
0516m0x_B_U50_A51NANNANT01.67 OP23
0526m0x_B_A51_A52NANNANT00.66 AAS1
0536m0x_B_A52_G53NANNANT00.91 AA08
0546m0x_B_G53_G54AAwAA01530.24 AA01
0556m0x_B_G54_C55AAAAA08610.36 AA08
0566m0x_B_C55_U56A-BAB05870.19 AB05
0576m0x_B_U56_U57NANNANT01.37 BB00
0586m0x_B_U57_C58NANNANT00.62 IC04
0596m0x_B_C58_A59NANNANT00.97 BB08
0606m0x_B_A59_U60NANNANT00.48 OP13
0616m0x_B_U60_G61NANNANT01.49 OP05
0626m0x_B_G61_C62AAAAA00650.28 AA00
0636m0x_B_C62_C63AAAAA00860.20 AA00
0646m0x_B_C63_G64AAAAA00820.23 AA00
0656m0x_B_G64_A65NANNANT00.68 IC02
0666m0x_B_A65_A66OPNOP11620.44 OP11
0676m0x_B_A66_A67AAAAA00780.33 AA00
0686m0x_B_A67_U68AAwAA01660.17 AA01
0696m0x_B_U68_C69NANNANT00.92 AB04
0706m0x_C_DG1_DC2BBBBB00370.25 BB00
0716m0x_C_DC2_DT3BBBBB00150.25 BB00
0726m0x_C_DT3_DC4BBBBB00740.28 BB00
0736m0x_C_DC4_DC5BBBBB01240.23 BB01
0746m0x_C_DC5_DT6BBBBB01260.34 BB01
0756m0x_C_DT6_DT7BBBBB01830.18 BB01
0766m0x_C_DT7_DT8BBBBB00540.36 BB00
0776m0x_C_DT8_DA9NANNANT00.58 OP17
0786m0x_C_DA9_DT10AAAAA00400.47 AA00
0796m0x_C_DT10_DC11AAAAA00330.36 AA00
0806m0x_C_DC11_DC12AAwAA01160.19 AA01
0816m0x_C_DC12_DT13AAAAA00410.30 AA00
0826m0x_C_DT13_DG14AAwAA01480.25 AA01
0836m0x_C_DG14_DA15AAAAA08600.31 AA08
0846m0x_C_DA15_DT16AAAAA00840.22 AA00
0856m0x_C_DT16_DT17AAAAA00910.13 AA00
0866m0x_C_DT17_DA18AAAAA00800.17 AA00
0876m0x_C_DA18_DA19AAAAA00570.22 AA00
0886m0x_C_DA19_DT20AAAAA03830.17 AA03
0896m0x_C_DT20_DC21AAwAA01670.26 AA01
0906m0x_C_DC21_DT22AAAAA00300.39 AA00
0916m0x_C_DT22_DT23AAwAA01250.31 AA01
0926m0x_C_DT23_DA24AAwAA11140.47 AA11
0936m0x_C_DA24_DG25AAAAA08130.47 AA08
0946m0x_C_DG25_DC26AAwAA01610.25 AA01
0956m0x_C_DC26_DA27AAAAA08870.23 AA08
0966m0x_C_DA27_DC28NANNANT00.64 IC04
0976m0x_D_DA1_DA2BBBBB00560.27 BB00
0986m0x_D_DA2_DA3NANNANT00.51 BB08
0996m0x_D_DA3_DG4BBBBB00520.43 BB00
1006m0x_D_DG4_DG5BB2BB07780.28 BB07
1016m0x_D_DG5_DA6BBBBB00740.25 BB00
1026m0x_D_DA6_DG7BBBBB00720.26 BB00
1036m0x_D_DG7_DC8B-ABA01390.21 BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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