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Conformers: ABBIImiBZICOPNSYNN
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Trimolecular G-quadruplex

Results of the assignment of 150 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016m05-m10_A_DG1_DT2NANNANT00.76 OP09
0026m05-m1_A_DG1_DT2NANNANT00.69 OP09
0036m05-m2_A_DG1_DT2NANNANT00.71 OP09
0046m05-m3_A_DG1_DT2NANNANT00.69 OP09
0056m05-m4_A_DG1_DT2NANNANT00.78 OP09
0066m05-m5_A_DG1_DT2NANNANT00.70 OP09
0076m05-m6_A_DG1_DT2NANNANT00.69 OP09
0086m05-m7_A_DG1_DT2NANNANT00.93 OP04
0096m05-m8_A_DG1_DT2NANNANT00.66 OP09
0106m05-m9_A_DG1_DT2NANNANT00.78 OP09
0116m05-m10_A_DT2_DT3NANNANT00.98 OP20
0126m05-m1_A_DT2_DT3NANNANT00.88 OP20
0136m05-m2_A_DT2_DT3NANNANT00.95 OP20
0146m05-m3_A_DT2_DT3NANNANT00.93 OP20
0156m05-m4_A_DT2_DT3NANNANT00.94 OP20
0166m05-m5_A_DT2_DT3NANNANT00.93 OP20
0176m05-m6_A_DT2_DT3OPNOP2070.90 OP20
0186m05-m7_A_DT2_DT3NANNANT01.07 OP20
0196m05-m8_A_DT2_DT3NANNANT00.88 OP20
0206m05-m9_A_DT2_DT3NANNANT00.95 OP20
0216m05-m10_A_DT3_DA4B12BB04110.51 BB04
0226m05-m1_A_DT3_DA4NANNANT00.90 BB16
0236m05-m2_A_DT3_DA4NANNANT00.61 BB00
0246m05-m3_A_DT3_DA4NANNANT00.95 BB16
0256m05-m4_A_DT3_DA4NANNANT00.99 BB16
0266m05-m5_A_DT3_DA4NANNANT00.90 BB16
0276m05-m6_A_DT3_DA4NANNANT00.82 BB00
0286m05-m7_A_DT3_DA4NANNANT00.92 BB16
0296m05-m8_A_DT3_DA4NANNANT00.91 BB16
0306m05-m9_A_DT3_DA4BB2BB07210.43 BB07
0316m05-m10_A_DA4_DG5NANNANT00.30 ZZ2S
0326m05-m1_A_DA4_DG5NANNANT00.28 ZZ2S
0336m05-m2_A_DA4_DG5NANNANT00.28 ZZ2S
0346m05-m3_A_DA4_DG5NANNANT00.27 ZZ2S
0356m05-m4_A_DA4_DG5NANNANT00.28 ZZ2S
0366m05-m5_A_DA4_DG5NANNANT00.31 ZZ2S
0376m05-m6_A_DA4_DG5NANNANT00.38 ZZ1S
0386m05-m7_A_DA4_DG5NANNANT00.29 ZZ2S
0396m05-m8_A_DA4_DG5NANNANT00.26 ZZ2S
0406m05-m9_A_DA4_DG5NANNANT00.36 ZZ2S
0416m05-m10_A_DG5_DG6SYNBBS1220.33 BBS1
0426m05-m1_A_DG5_DG6NANNANT00.50 BBS1
0436m05-m2_A_DG5_DG6SYNBBS1260.39 BBS1
0446m05-m3_A_DG5_DG6NANNANT00.41 BBS1
0456m05-m4_A_DG5_DG6SYNBBS1110.39 BBS1
0466m05-m5_A_DG5_DG6NANNANT00.48 BBS1
0476m05-m6_A_DG5_DG6NANNANT00.42 BBS1
0486m05-m7_A_DG5_DG6SYNBBS1260.35 BBS1
0496m05-m8_A_DG5_DG6SYNBBS1160.34 BBS1
0506m05-m9_A_DG5_DG6SYNBBS1290.33 BBS1
0516m05-m10_B_DG7_DT8NANNANT00.76 BB16
0526m05-m1_B_DG7_DT8NANNANT00.72 IC06
0536m05-m2_B_DG7_DT8NANNANT00.71 IC06
0546m05-m3_B_DG7_DT8NANNANT00.72 IC06
0556m05-m4_B_DG7_DT8NANNANT00.80 BB00
0566m05-m5_B_DG7_DT8NANNANT00.69 IC06
0576m05-m6_B_DG7_DT8NANNANT00.75 IC06
0586m05-m7_B_DG7_DT8NANNANT00.73 IC06
0596m05-m8_B_DG7_DT8NANNANT00.93 BB16
0606m05-m9_B_DG7_DT8NANNANT00.73 IC06
0616m05-m10_B_DT8_DT9BBBBB00400.37 BB00
0626m05-m1_B_DT8_DT9OPNOP22660.77 OP22
0636m05-m2_B_DT8_DT9OPNOP22660.78 OP22
0646m05-m3_B_DT8_DT9OPNOP22430.79 OP22
0656m05-m4_B_DT8_DT9NANNANT00.78 BB00
0666m05-m5_B_DT8_DT9BB2BB07150.56 BB07
0676m05-m6_B_DT8_DT9BB2BB07160.49 BB07
0686m05-m7_B_DT8_DT9OPNOP22690.69 OP22
0696m05-m8_B_DT8_DT9BBBBB00490.38 BB00
0706m05-m9_B_DT8_DT9OPNOP22470.64 OP22
0716m05-m10_B_DT9_DA10NANNANT00.55 OP22
0726m05-m1_B_DT9_DA10OPNOP22410.84 OP22
0736m05-m2_B_DT9_DA10NANNANT00.72 OP22
0746m05-m3_B_DT9_DA10NANNANT00.75 OP22
0756m05-m4_B_DT9_DA10NANNANT00.58 OP22
0766m05-m5_B_DT9_DA10NANNANT00.79 OP22
0776m05-m6_B_DT9_DA10OPNOP22160.86 OP22
0786m05-m7_B_DT9_DA10NANNANT00.77 OP22
0796m05-m8_B_DT9_DA10OPNOP22290.58 OP22
0806m05-m9_B_DT9_DA10NANNANT00.77 OP22
0816m05-m10_B_DA10_DG11NANNANT00.71 ZZ2S
0826m05-m1_B_DA10_DG11NANNANT01.50 OP10
0836m05-m2_B_DA10_DG11NANNANT00.48 ZZ2S
0846m05-m3_B_DA10_DG11NANNANT00.58 ZZ2S
0856m05-m4_B_DA10_DG11NANNANT00.65 ZZ2S
0866m05-m5_B_DA10_DG11NANNANT00.74 ZZ2S
0876m05-m6_B_DA10_DG11NANNANT01.47 OP10
0886m05-m7_B_DA10_DG11NANNANT00.55 ZZ2S
0896m05-m8_B_DA10_DG11NANNANT00.72 ZZ2S
0906m05-m9_B_DA10_DG11NANNANT00.90 OP1S
0916m05-m10_B_DG11_DG12SYNBBS180.44 BBS1
0926m05-m1_B_DG11_DG12SYNBBS1380.43 BBS1
0936m05-m2_B_DG11_DG12NANNANT00.43 BBS1
0946m05-m3_B_DG11_DG12SYNBBS1110.41 BBS1
0956m05-m4_B_DG11_DG12SYNBBS1220.37 BBS1
0966m05-m5_B_DG11_DG12NANNANT00.50 BBS1
0976m05-m6_B_DG11_DG12SYNBBS1380.39 BBS1
0986m05-m7_B_DG11_DG12SYNBBS1440.37 BBS1
0996m05-m8_B_DG11_DG12SYNBBS170.47 BBS1
1006m05-m9_B_DG11_DG12SYNBBS1200.40 BBS1
1016m05-m10_C_DG13_DT14NANNANT00.68 BBS1
1026m05-m1_C_DG13_DT14NANNANT00.55 BBS1
1036m05-m2_C_DG13_DT14NANNANT00.70 BBS1
1046m05-m3_C_DG13_DT14NANNANT00.68 BBS1
1056m05-m4_C_DG13_DT14NANNANT00.68 BBS1
1066m05-m5_C_DG13_DT14NANNANT00.83 BBS1
1076m05-m6_C_DG13_DT14NANNANT00.79 BBS1
1086m05-m7_C_DG13_DT14NANNANT01.31 BBS1
1096m05-m8_C_DG13_DT14NANNANT00.70 IC05
1106m05-m9_C_DG13_DT14NANNANT00.71 BBS1
1116m05-m10_C_DT14_DT15NANNANT00.78 BB00
1126m05-m1_C_DT14_DT15NANNANT00.89 OP22
1136m05-m2_C_DT14_DT15NANNANT00.83 BB00
1146m05-m3_C_DT14_DT15NANNANT00.80 OP22
1156m05-m4_C_DT14_DT15NANNANT00.64 BB16
1166m05-m5_C_DT14_DT15NANNANT00.73 BB16
1176m05-m6_C_DT14_DT15NANNANT00.87 OP22
1186m05-m7_C_DT14_DT15NANNANT01.03 OP22
1196m05-m8_C_DT14_DT15NANNANT00.72 BB16
1206m05-m9_C_DT14_DT15NANNANT00.72 BB16
1216m05-m10_C_DT15_DA16NANNANT00.71 BB16
1226m05-m1_C_DT15_DA16NANNANT00.63 BB16
1236m05-m2_C_DT15_DA16NANNANT00.66 BB16
1246m05-m3_C_DT15_DA16NANNANT00.60 BB16
1256m05-m4_C_DT15_DA16NANNANT00.62 BB16
1266m05-m5_C_DT15_DA16NANNANT00.63 BB16
1276m05-m6_C_DT15_DA16NANNANT00.55 BB16
1286m05-m7_C_DT15_DA16NANNANT00.57 BB16
1296m05-m8_C_DT15_DA16NANNANT00.61 BB16
1306m05-m9_C_DT15_DA16NANNANT00.60 BB16
1316m05-m10_C_DA16_DG17NANNANT01.13 AB1S
1326m05-m1_C_DA16_DG17NANNANT01.15 AB1S
1336m05-m2_C_DA16_DG17NANNANT01.15 AB1S
1346m05-m3_C_DA16_DG17NANNANT01.16 BB1S
1356m05-m4_C_DA16_DG17NANNANT00.53 OP10
1366m05-m5_C_DA16_DG17NANNANT01.15 AB1S
1376m05-m6_C_DA16_DG17NANNANT01.14 BB1S
1386m05-m7_C_DA16_DG17NANNANT01.17 AB1S
1396m05-m8_C_DA16_DG17NANNANT00.51 OP10
1406m05-m9_C_DA16_DG17NANNANT00.50 OP10
1416m05-m10_C_DG17_DG18SYNBBS1410.37 BBS1
1426m05-m1_C_DG17_DG18SYNBBS1110.43 BBS1
1436m05-m2_C_DG17_DG18SYNBBS1430.34 BBS1
1446m05-m3_C_DG17_DG18SYNBBS1440.40 BBS1
1456m05-m4_C_DG17_DG18SYNBBS1340.38 BBS1
1466m05-m5_C_DG17_DG18SYNBBS1180.43 BBS1
1476m05-m6_C_DG17_DG18SYNBBS1420.36 BBS1
1486m05-m7_C_DG17_DG18SYNBBS1430.34 BBS1
1496m05-m8_C_DG17_DG18SYNBBS1570.36 BBS1
1506m05-m9_C_DG17_DG18NANNANT00.42 BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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