Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
ASFV pA104R in complex with double-strand DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6lmj_C_DT1_DG2 | BBB | BB00 | 51 | 0.53 |
| 02 | 6lmj_C_DG2_DC3 | B-A | BA17 | 74 | 0.40 |
| 03 | 6lmj_C_DC3_DT4 | NAN | NANT | 0 | 1.06 |
| 04 | 6lmj_C_DT4_DT5 | NAN | NANT | 0 | 1.11 |
| 05 | 6lmj_C_DT5_DA6 | NAN | NANT | 0 | 1.00 |
| 06 | 6lmj_C_DA6_DT7 | NAN | NANT | 0 | 1.28 |
| 07 | 6lmj_C_DT7_DC8 | NAN | NANT | 0 | 1.62 |
| 08 | 6lmj_C_DC8_DA9 | A-B | AB05 | 38 | 0.51 |
| 09 | 6lmj_C_DA9_DA10 | B12 | BB04 | 17 | 0.31 |
| 10 | 6lmj_C_DA10_DT11 | BBB | BB01 | 47 | 0.29 |
| 11 | 6lmj_C_DT11_DT12 | BBB | BB00 | 20 | 0.53 |
| 12 | 6lmj_C_DT12_DT13 | A-B | AB02 | 56 | 0.44 |
| 13 | 6lmj_C_DT13_DG14 | miB | BB13 | 52 | 0.38 |
| 14 | 6lmj_C_DG14_DT15 | BBw | BB16 | 47 | 0.59 |
| 15 | 6lmj_C_DT15_DT16 | BBB | BB00 | 68 | 0.32 |
| 16 | 6lmj_C_DT16_DG17 | BBB | BB00 | 79 | 0.24 |
| 17 | 6lmj_C_DG17_DC18 | BBB | BB00 | 89 | 0.16 |
| 18 | 6lmj_C_DC18_DA19 | B-A | BA17 | 66 | 0.41 |
| 19 | 6lmj_D_DT1_DG2 | NAN | NANT | 0 | 0.71 |
| 20 | 6lmj_D_DG2_DC3 | NAN | NANT | 0 | 0.46 |
| 21 | 6lmj_D_DC3_DT4 | NAN | NANT | 0 | 1.32 |
| 22 | 6lmj_D_DT4_DT5 | NAN | NANT | 0 | 2.36 |
| 23 | 6lmj_D_DT5_DA6 | NAN | NANT | 0 | 0.34 |
| 24 | 6lmj_D_DA6_DT7 | NAN | NANT | 0 | 1.70 |
| 25 | 6lmj_D_DT7_DC8 | NAN | NANT | 0 | 1.61 |
| 26 | 6lmj_D_DC8_DA9 | A-B | AB05 | 44 | 0.34 |
| 27 | 6lmj_D_DA9_DA10 | miB | BB10 | 80 | 0.18 |
| 28 | 6lmj_D_DA10_DT11 | NAN | NANT | 0 | 0.78 |
| 29 | 6lmj_D_DT11_DT12 | BBB | BB00 | 59 | 0.30 |
| 30 | 6lmj_D_DT12_DT13 | BBB | BB00 | 77 | 0.19 |
| 31 | 6lmj_D_DT13_DG14 | B12 | BB04 | 73 | 0.21 |
| 32 | 6lmj_D_DG14_DT15 | BBw | BB02 | 27 | 0.30 |
| 33 | 6lmj_D_DT15_DT16 | BBB | BB01 | 44 | 0.27 |
| 34 | 6lmj_D_DT16_DG17 | BBB | BB00 | 61 | 0.33 |
| 35 | 6lmj_D_DG17_DC18 | BBB | BB00 | 82 | 0.15 |
| 36 | 6lmj_D_DC18_DA19 | B-A | BA08 | 61 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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