Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of FOXC2-DBD bound to a palindromic DNA sequence
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6lbm_A_DG1_DG2 | BBB | BB00 | 13 | 0.33 |
| 02 | 6lbm_A_DG2_DT3 | B-A | BA10 | 88 | 0.26 |
| 03 | 6lbm_A_DT3_DG4 | A-B | AB04 | 42 | 0.36 |
| 04 | 6lbm_A_DG4_DT5 | BBB | BB01 | 36 | 0.19 |
| 05 | 6lbm_A_DT5_DA6 | B-A | BA05 | 54 | 0.33 |
| 06 | 6lbm_A_DA6_DA7 | B-A | BA05 | 34 | 0.19 |
| 07 | 6lbm_A_DA7_DA8 | A-B | AB01 | 27 | 0.26 |
| 08 | 6lbm_A_DA8_DC9 | B-A | BA05 | 83 | 0.15 |
| 09 | 6lbm_A_DC9_DA10 | BBB | BB01 | 24 | 0.24 |
| 10 | 6lbm_A_DA10_DT11 | miB | BB13 | 81 | 0.15 |
| 11 | 6lbm_A_DT11_DG12 | NAN | NANT | 0 | 0.60 |
| 12 | 6lbm_A_DG12_DT13 | NAN | NANT | 0 | 0.43 |
| 13 | 6lbm_A_DT13_DT14 | BBB | BB00 | 23 | 0.37 |
| 14 | 6lbm_A_DT14_DT15 | NAN | NANT | 0 | 0.42 |
| 15 | 6lbm_B_DA7_DA8 | NAN | NANT | 0 | 0.56 |
| 16 | 6lbm_B_DA8_DC9 | B-A | BA10 | 28 | 0.52 |
| 17 | 6lbm_B_DC9_DA10 | A-B | AB01 | 40 | 0.36 |
| 18 | 6lbm_B_DA10_DT11 | BBB | BB01 | 82 | 0.16 |
| 19 | 6lbm_B_DT11_DG12 | NAN | NANT | 0 | 0.45 |
| 20 | 6lbm_B_DG12_DT13 | BBB | BB00 | 28 | 0.33 |
| 21 | 6lbm_B_DT13_DT14 | B-A | BA05 | 74 | 0.18 |
| 22 | 6lbm_B_DT14_DT15 | A-B | AB01 | 22 | 0.35 |
| 23 | 6lbm_B_DT15_DA16 | BBB | BB00 | 91 | 0.18 |
| 24 | 6lbm_B_DA16_DC17 | BBB | BB00 | 82 | 0.27 |
| 25 | 6lbm_B_DC17_DA18 | BBB | BB00 | 62 | 0.36 |
| 26 | 6lbm_B_DA18_DC19 | BBB | BB00 | 70 | 0.32 |
| 27 | 6lbm_B_DC19_DC20 | BBB | BB00 | 88 | 0.18 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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