DNATCO v4.1: results

Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	6l6y_A_DG0_DG1	NAN	NANT	0	0.53	BB08
02	6l6y_A_DG1_DT2	miB	BB10	23	0.34	BB10
03	6l6y_A_DT2_DC3	BBB	BB00	46	0.34	BB00
04	6l6y_A_DC3_DT4	BBw	BB02	51	0.30	BB02
05	6l6y_A_DT4_DC5	B-A	BA05	52	0.28	BA05
06	6l6y_A_DC5_DT6	BBB	BB01	46	0.27	BB01
07	6l6y_A_DT6_DA7	NAN	NANT	0	0.88	AA02
08	6l6y_A_DA7_DT8	AAA	AA02	22	0.50	AA02
09	6l6y_A_DT8_DT9	NAN	NANT	0	0.30	AB01
10	6l6y_A_DT9_DG10	BBB	BB00	37	0.23	BB00
11	6l6y_A_DG10_DT11	BBB	BB00	54	0.27	BB00
12	6l6y_A_DT11_DC12	B-A	BA01	17	0.29	BA01
13	6l6y_A_DC12_DC13	AAA	AA00	36	0.49	AA00
14	6l6y_A_DC13_DT14	NAN	NANT	0	0.23	AB03
15	6l6y_A_DT14_DG15	NAN	NANT	0	0.47	BA13
16	6l6y_B_DC1_DC2	NAN	NANT	0	0.73	IC04
17	6l6y_B_DC2_DA3	NAN	NANT	0	0.68	BB02
18	6l6y_B_DA3_DG4	NAN	NANT	0	0.33	BB15
19	6l6y_B_DG4_DG5	B-A	BA09	36	0.23	BA09
20	6l6y_B_DG5_DA6	A-B	AB04	60	0.31	AB04
21	6l6y_B_DA6_DC7	BBB	BB00	55	0.40	BB00
22	6l6y_B_DC7_DA8	B-A	BA16	18	0.37	BA16
23	6l6y_B_DA8_DA9	A-B	AB04	44	0.57	AB04
24	6l6y_B_DA9_DT10	NAN	NANT	0	0.57	BA08
25	6l6y_B_DT10_DA11	A-B	AB01	36	0.27	AB01
26	6l6y_B_DA11_DG12	BBB	BB00	70	0.33	BB00
27	6l6y_B_DG12_DA13	BBB	BB00	36	0.31	BB00
28	6l6y_B_DA13_DG14	B12	BB04	71	0.20	BB04
29	6l6y_B_DG14_DA15	BBB	BB00	81	0.14	BB00
30	6l6y_B_DA15_DC16	miB	BB15	31	0.27	BB15
31	6l6y_C_DG0_DG1	NAN	NANT	0	0.50	AA00
32	6l6y_C_DG1_DT2	A-B	AB01	34	0.36	AB01
33	6l6y_C_DT2_DC3	BBw	BB02	17	0.35	BB02
34	6l6y_C_DC3_DT4	NAN	NANT	0	0.58	BA10
35	6l6y_C_DT4_DC5	BBB	BB01	24	0.40	BB01
36	6l6y_C_DC5_DT6	NAN	NANT	0	0.40	BB17
37	6l6y_C_DT6_DA7	AAA	AA02	73	0.15	AA02
38	6l6y_C_DA7_DT8	AAA	AA09	20	0.32	AA09
39	6l6y_C_DT8_DT9	A-B	AB01	33	0.37	AB01
40	6l6y_C_DT9_DG10	BBB	BB01	70	0.25	BB01
41	6l6y_C_DG10_DT11	BBB	BB00	11	0.33	BB00
42	6l6y_C_DT11_DC12	BBB	BB00	52	0.23	BB00
43	6l6y_C_DC12_DC13	BBB	BB00	67	0.23	BB00
44	6l6y_C_DC13_DT14	BBB	BB00	52	0.26	BB00
45	6l6y_C_DT14_DG15	NAN	NANT	0	0.60	BB10
46	6l6y_E_DC1_DC2	BBw	BB16	54	0.37	BB16
47	6l6y_E_DC2_DA3	BB2	BB07	74	0.32	BB07
48	6l6y_E_DA3_DG4	miB	BB15	57	0.32	BB15
49	6l6y_E_DG4_DG5	B-A	BA08	48	0.36	BA08
50	6l6y_E_DG5_DA6	BBB	BB00	16	0.23	BB00
51	6l6y_E_DA6_DC7	BBB	BB00	65	0.34	BB00
52	6l6y_E_DC7_DA8	B-A	BA16	37	0.34	BA16
53	6l6y_E_DA8_DA9	NAN	NANT	0	0.55	AB04
54	6l6y_E_DA9_DT10	AAA	AA02	13	0.45	AA02
55	6l6y_E_DT10_DA11	A-B	AB03	54	0.33	AB03
56	6l6y_E_DA11_DG12	BB2	BB07	44	0.14	BB07
57	6l6y_E_DG12_DA13	B12	BB04	68	0.25	BB04
58	6l6y_E_DA13_DG14	NAN	NANT	0	0.85	BB12
59	6l6y_E_DG14_DA15	BBw	BB03	10	0.40	BB03
60	6l6y_E_DA15_DC16	NAN	NANT	0	0.79	IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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