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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of human nucleosome containing H2A.J

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016kvd_I_DA1_DT2NANNANT00.57 BB00
0026kvd_I_DT2_DC3NANNANT00.47 BB08
0036kvd_I_DC3_DA4BBBBB00340.25 BB00
0046kvd_I_DA4_DA5BBBBB00780.11 BB00
0056kvd_I_DA5_DT6BBBBB01710.22 BB01
0066kvd_I_DT6_DA7BBBBB00340.33 BB00
0076kvd_I_DA7_DT8BBBBB00740.19 BB00
0086kvd_I_DT8_DC9BBBBB00840.16 BB00
0096kvd_I_DC9_DC10NANNANT00.34 BB02
0106kvd_I_DC10_DA11BBwBB11260.42 BB11
0116kvd_I_DA11_DC12NANNANT00.44 AB03
0126kvd_I_DC12_DC13NANNANT00.39 BA01
0136kvd_I_DC13_DT14A-BAB01810.16 AB01
0146kvd_I_DT14_DG15B12BB04430.41 BB04
0156kvd_I_DG15_DC16B12BB04160.34 BB04
0166kvd_I_DC16_DA17BB2BB07770.34 BB07
0176kvd_I_DA17_DG18BBBBB00710.26 BB00
0186kvd_I_DG18_DA19BBBBB00810.30 BB00
0196kvd_I_DA19_DT20BBBBB01890.16 BB01
0206kvd_I_DT20_DT21BBBBB00740.18 BB00
0216kvd_I_DT21_DC22BBBBB00960.13 BB00
0226kvd_I_DC22_DT23miBBB15870.19 BB15
0236kvd_I_DT23_DA24BBBBB00600.32 BB00
0246kvd_I_DA24_DC25B12BB04920.20 BB04
0256kvd_I_DC25_DC26BBBBB00890.23 BB00
0266kvd_I_DC26_DA27BB2BB07770.36 BB07
0276kvd_I_DA27_DA28BBBBB00830.21 BB00
0286kvd_I_DA28_DA29B12BB04930.17 BB04
0296kvd_I_DA29_DA30BBBBB00860.12 BB00
0306kvd_I_DA30_DG31BBBBB00880.24 BB00
0316kvd_I_DG31_DT32BBBBB00270.23 BB00
0326kvd_I_DT32_DG33BBBBB00690.16 BB00
0336kvd_I_DG33_DT34BBBBB00250.21 BB00
0346kvd_I_DT34_DA35BBBBB00830.25 BB00
0356kvd_I_DA35_DT36BBBBB01860.12 BB01
0366kvd_I_DT36_DT37miBBB15660.32 BB15
0376kvd_I_DT37_DT38BBBBB00750.14 BB00
0386kvd_I_DT38_DG39BB2BB07740.34 BB07
0396kvd_I_DG39_DG40BBBBB00740.28 BB00
0406kvd_I_DG40_DA41BB2BB07620.26 BB07
0416kvd_I_DA41_DA42BBBBB00790.20 BB00
0426kvd_I_DA42_DA43BBBBB00750.27 BB00
0436kvd_I_DA43_DC44NANNANT00.47 BA10
0446kvd_I_DC44_DT45BBwBB16410.44 BB16
0456kvd_I_DT45_DG46BBwBB11740.31 BB11
0466kvd_I_DG46_DC47miBBB15290.36 BB15
0476kvd_I_DC47_DT48BB2BB08710.42 BB08
0486kvd_I_DT48_DC49NANNANT00.61 BB05
0496kvd_I_DC49_DC50B12BB04180.40 BB04
0506kvd_I_DC50_DA51BBBBB00900.13 BB00
0516kvd_I_DA51_DT52BBBBB01140.25 BB01
0526kvd_I_DT52_DC53BBBBB01540.26 BB01
0536kvd_I_DC53_DA54B-ABA05380.28 BA05
0546kvd_I_DA54_DA55A-BAB03850.35 AB03
0556kvd_I_DA55_DA56BBBBB00760.17 BB00
0566kvd_I_DA56_DA57BB2BB07710.14 BB07
0576kvd_I_DA57_DG58miBBB10530.24 BB10
0586kvd_I_DG58_DG59BB2BB07570.21 BB07
0596kvd_I_DG59_DC60BBBBB00840.27 BB00
0606kvd_I_DC60_DA61B12BB04810.23 BB04
0616kvd_I_DA61_DT62BBBBB01810.19 BB01
0626kvd_I_DT62_DG63BBBBB00610.25 BB00
0636kvd_I_DG63_DT64BBBBB00630.22 BB00
0646kvd_I_DT64_DT65BBBBB00760.22 BB00
0656kvd_I_DT65_DC66BBBBB00850.21 BB00
0666kvd_I_DC66_DA67BB2BB07920.12 BB07
0676kvd_I_DA67_DG68B12BB04540.45 BB04
0686kvd_I_DG68_DC69BB2BB07890.12 BB07
0696kvd_I_DC69_DT70B12BB04460.23 BB04
0706kvd_I_DT70_DG71BBBBB00780.23 BB00
0716kvd_I_DG71_DA72BBBBB00790.23 BB00
0726kvd_I_DA72_DA73BBBBB00640.16 BB00
0736kvd_I_DA73_DT74BBBBB00380.27 BB00
0746kvd_I_DT74_DT75BBBBB00630.20 BB00
0756kvd_I_DT75_DC76BBBBB00860.20 BB00
0766kvd_I_DC76_DA77BB2BB07400.22 BB07
0776kvd_I_DA77_DG78BB2BB0780.43 BB07
0786kvd_I_DG78_DC79BB2BB07850.23 BB07
0796kvd_I_DC79_DT80B12BB04630.37 BB04
0806kvd_I_DT80_DG81B12BB04840.17 BB04
0816kvd_I_DG81_DA82BBBBB00830.16 BB00
0826kvd_I_DA82_DA83BBBBB00820.14 BB00
0836kvd_I_DA83_DC84BBBBB01730.18 BB01
0846kvd_I_DC84_DA85BBBBB00390.50 BB00
0856kvd_I_DA85_DT86BBBBB01790.22 BB01
0866kvd_I_DT86_DG87BBBBB00590.26 BB00
0876kvd_I_DG87_DC88BB2BB07830.21 BB07
0886kvd_I_DC88_DC89B12BB04490.40 BB04
0896kvd_I_DC89_DT90BB2BB07720.24 BB07
0906kvd_I_DT90_DT91BBBBB01940.13 BB01
0916kvd_I_DT91_DT92BBBBB00540.22 BB00
0926kvd_I_DT92_DT93BBBBB00540.22 BB00
0936kvd_I_DT93_DG94BBBBB00390.28 BB00
0946kvd_I_DG94_DA95BBBBB00620.29 BB00
0956kvd_I_DA95_DT96miBBB15420.28 BB15
0966kvd_I_DT96_DG97BBwBB02260.53 BB02
0976kvd_I_DG97_DG98NANNANT00.48 BB15
0986kvd_I_DG98_DA99BB2BB07560.25 BB07
0996kvd_I_DA99_DG100BBBBB00610.31 BB00
1006kvd_I_DG100_DC101BB2BB08320.35 BB08
1016kvd_I_DC101_DA102NANNANT00.63 BB02
1026kvd_I_DA102_DG103BBBBB00610.30 BB00
1036kvd_I_DG103_DT104miBBB15870.18 BB15
1046kvd_I_DT104_DT105BBwBB02240.30 BB02
1056kvd_I_DT105_DT106BBBBB00540.24 BB00
1066kvd_I_DT106_DC107BBBBB00740.25 BB00
1076kvd_I_DC107_DC108BB2BB08680.32 BB08
1086kvd_I_DC108_DA109BB2BB07600.44 BB07
1096kvd_I_DA109_DA110BBBBB00670.27 BB00
1106kvd_I_DA110_DA111B-ABA08880.17 BA08
1116kvd_I_DA111_DT112A-BAB01720.25 AB01
1126kvd_I_DT112_DA113BBBBB00770.26 BB00
1136kvd_I_DA113_DC114BBBBB00320.23 BB00
1146kvd_I_DC114_DA115B12BB04770.13 BB04
1156kvd_I_DA115_DC116B-ABA05890.19 BA05
1166kvd_I_DC116_DT117BBBBB00140.38 BB00
1176kvd_I_DT117_DT118BBBBB01910.12 BB01
1186kvd_I_DT118_DT119BBBBB01900.21 BB01
1196kvd_I_DT119_DT120BBBBB00650.24 BB00
1206kvd_I_DT120_DG121B12BB04640.35 BB04
1216kvd_I_DG121_DG122B12BB04750.15 BB04
1226kvd_I_DG122_DT123BBBBB01240.20 BB01
1236kvd_I_DT123_DA124BBBBB01310.38 BB01
1246kvd_I_DA124_DG125BBBBB00870.30 BB00
1256kvd_I_DG125_DA126BBBBB00600.30 BB00
1266kvd_I_DA126_DA127BBBBB00900.12 BB00
1276kvd_I_DA127_DT128BBwBB02650.24 BB02
1286kvd_I_DT128_DC129BBBBB00360.34 BB00
1296kvd_I_DC129_DT130BB2BB07500.33 BB07
1306kvd_I_DT130_DG131NANNANT00.48 BB08
1316kvd_I_DG131_DC132NANNANT00.49 BB15
1326kvd_I_DC132_DA133BB2BB07690.24 BB07
1336kvd_I_DA133_DG134NANNANT00.55 BB05
1346kvd_I_DG134_DG135B-ABA08480.42 BA08
1356kvd_I_DG135_DT136BBBBB01460.24 BB01
1366kvd_I_DT136_DG137BBBBB00830.24 BB00
1376kvd_I_DG137_DG138B12BB04720.23 BB04
1386kvd_I_DG138_DA139BBBBB00720.28 BB00
1396kvd_I_DA139_DT140miBBB15470.27 BB15
1406kvd_I_DT140_DA141miBBB15570.34 BB15
1416kvd_I_DA141_DT142BBBBB00810.21 BB00
1426kvd_I_DT142_DT143BBBBB00380.23 BB00
1436kvd_I_DT143_DG144BBBBB00620.26 BB00
1446kvd_I_DG144_DA145BBBBB00650.16 BB00
1456kvd_I_DA145_DT146NANNANT00.35 BB03
1466kvd_J_DA147_DT148NANNANT00.94 BB03
1476kvd_J_DT148_DC149NANNANT00.57 BB08
1486kvd_J_DC149_DA150BBBBB00290.27 BB00
1496kvd_J_DA150_DA151BBBBB00830.17 BB00
1506kvd_J_DA151_DT152BBBBB01860.15 BB01
1516kvd_J_DT152_DA153BBBBB00550.20 BB00
1526kvd_J_DA153_DT154BBBBB00790.24 BB00
1536kvd_J_DT154_DC155BBBBB00850.17 BB00
1546kvd_J_DC155_DC156NANNANT00.28 BB15
1556kvd_J_DC156_DA157BBwBB11440.26 BB11
1566kvd_J_DA157_DC158A-BAB03430.47 AB03
1576kvd_J_DC158_DC159NANNANT00.41 AA04
1586kvd_J_DC159_DT160A-BAB01810.16 AB01
1596kvd_J_DT160_DG161B12BB04500.49 BB04
1606kvd_J_DG161_DC162NANNANT00.30 BB10
1616kvd_J_DC162_DA163BB2BB07760.27 BB07
1626kvd_J_DA163_DG164BBBBB00750.25 BB00
1636kvd_J_DG164_DA165BBBBB00670.46 BB00
1646kvd_J_DA165_DT166BBBBB01820.23 BB01
1656kvd_J_DT166_DT167BBBBB00760.20 BB00
1666kvd_J_DT167_DC168BBBBB00950.19 BB00
1676kvd_J_DC168_DT169miBBB15780.20 BB15
1686kvd_J_DT169_DA170BBBBB00540.29 BB00
1696kvd_J_DA170_DC171B12BB04940.15 BB04
1706kvd_J_DC171_DC172BBBBB00920.20 BB00
1716kvd_J_DC172_DA173NANNANT00.46 BB08
1726kvd_J_DA173_DA174BBBBB00850.21 BB00
1736kvd_J_DA174_DA175B12BB04900.19 BB04
1746kvd_J_DA175_DA176BBBBB00810.17 BB00
1756kvd_J_DA176_DG177BBBBB00930.13 BB00
1766kvd_J_DG177_DT178BBBBB00480.19 BB00
1776kvd_J_DT178_DG179BBBBB00710.16 BB00
1786kvd_J_DG179_DT180miBBB15680.19 BB15
1796kvd_J_DT180_DA181BBBBB00820.27 BB00
1806kvd_J_DA181_DT182BBBBB01900.14 BB01
1816kvd_J_DT182_DT183miBBB15530.42 BB15
1826kvd_J_DT183_DT184BBBBB00750.13 BB00
1836kvd_J_DT184_DG185BB2BB07710.32 BB07
1846kvd_J_DG185_DG186BBBBB00480.30 BB00
1856kvd_J_DG186_DA187BB2BB07650.22 BB07
1866kvd_J_DA187_DA188BBBBB00850.17 BB00
1876kvd_J_DA188_DA189BBBBB00800.18 BB00
1886kvd_J_DA189_DC190NANNANT00.30 BA10
1896kvd_J_DC190_DT191BBwBB16410.41 BB16
1906kvd_J_DT191_DG192B12BB04670.30 BB04
1916kvd_J_DG192_DC193miBBB15390.36 BB15
1926kvd_J_DC193_DT194BB2BB08610.40 BB08
1936kvd_J_DT194_DC195NANNANT00.72 BB02
1946kvd_J_DC195_DC196B12BB04160.31 BB04
1956kvd_J_DC196_DA197BBBBB00880.20 BB00
1966kvd_J_DA197_DT198B-ABA05630.19 BA05
1976kvd_J_DT198_DC199BBBBB01480.28 BB01
1986kvd_J_DC199_DA200B-ABA05450.18 BA05
1996kvd_J_DA200_DA201A-BAB03850.25 AB03
2006kvd_J_DA201_DA202BBBBB00710.31 BB00
2016kvd_J_DA202_DA203BB2BB07660.20 BB07
2026kvd_J_DA203_DG204miBBB10530.27 BB10
2036kvd_J_DG204_DG205BB2BB07780.18 BB07
2046kvd_J_DG205_DC206BBBBB00840.19 BB00
2056kvd_J_DC206_DA207B12BB04890.17 BB04
2066kvd_J_DA207_DT208BBBBB00590.19 BB00
2076kvd_J_DT208_DG209BBBBB00660.25 BB00
2086kvd_J_DG209_DT210BBBBB00480.30 BB00
2096kvd_J_DT210_DT211BBBBB00660.27 BB00
2106kvd_J_DT211_DC212BBBBB00800.28 BB00
2116kvd_J_DC212_DA213BB2BB07710.29 BB07
2126kvd_J_DA213_DG214BB2BB07810.26 BB07
2136kvd_J_DG214_DC215BBBBB00650.29 BB00
2146kvd_J_DC215_DT216BB2BB07190.31 BB07
2156kvd_J_DT216_DG217BBBBB00420.37 BB00
2166kvd_J_DG217_DA218BBBBB00770.17 BB00
2176kvd_J_DA218_DA219BBBBB00650.14 BB00
2186kvd_J_DA219_DT220BBBBB00400.28 BB00
2196kvd_J_DT220_DT221BBBBB00650.21 BB00
2206kvd_J_DT221_DC222BBBBB00880.21 BB00
2216kvd_J_DC222_DA223BB2BB07570.19 BB07
2226kvd_J_DA223_DG224BB2BB07150.31 BB07
2236kvd_J_DG224_DC225BB2BB07280.35 BB07
2246kvd_J_DC225_DT226B12BB04880.19 BB04
2256kvd_J_DT226_DG227B12BB04760.30 BB04
2266kvd_J_DG227_DA228BBBBB00640.40 BB00
2276kvd_J_DA228_DA229BBBBB00910.14 BB00
2286kvd_J_DA229_DC230BBBBB01760.16 BB01
2296kvd_J_DC230_DA231B12BB04220.22 BB04
2306kvd_J_DA231_DT232BBBBB00340.22 BB00
2316kvd_J_DT232_DG233BBBBB00450.35 BB00
2326kvd_J_DG233_DC234BB2BB07750.24 BB07
2336kvd_J_DC234_DC235B12BB04540.29 BB04
2346kvd_J_DC235_DT236BB2BB07650.22 BB07
2356kvd_J_DT236_DT237BBBBB01630.28 BB01
2366kvd_J_DT237_DT238BBBBB00700.16 BB00
2376kvd_J_DT238_DT239BBBBB00540.21 BB00
2386kvd_J_DT239_DG240BBBBB00360.25 BB00
2396kvd_J_DG240_DA241BBBBB00610.21 BB00
2406kvd_J_DA241_DT242miBBB15430.24 BB15
2416kvd_J_DT242_DG243BBwBB02330.42 BB02
2426kvd_J_DG243_DG244BBBBB00200.36 BB00
2436kvd_J_DG244_DA245BB2BB07360.23 BB07
2446kvd_J_DA245_DG246BBBBB00740.18 BB00
2456kvd_J_DG246_DC247NANNANT00.44 BB08
2466kvd_J_DC247_DA248NANNANT00.56 BB08
2476kvd_J_DA248_DG249BBBBB00230.41 BB00
2486kvd_J_DG249_DT250miBBB15640.27 BB15
2496kvd_J_DT250_DT251NANNANT00.39 BB02
2506kvd_J_DT251_DT252BBBBB00430.21 BB00
2516kvd_J_DT252_DC253BBBBB00720.32 BB00
2526kvd_J_DC253_DC254BB2BB08790.24 BB08
2536kvd_J_DC254_DA255BB2BB07670.29 BB07
2546kvd_J_DA255_DA256BBBBB00850.18 BB00
2556kvd_J_DA256_DA257B-ABA08830.34 BA08
2566kvd_J_DA257_DT258A-BAB01860.26 AB01
2576kvd_J_DT258_DA259BBBBB00730.29 BB00
2586kvd_J_DA259_DC260BBBBB00310.27 BB00
2596kvd_J_DC260_DA261B12BB04710.24 BB04
2606kvd_J_DA261_DC262BBBBB01810.19 BB01
2616kvd_J_DC262_DT263BBBBB01850.15 BB01
2626kvd_J_DT263_DT264BBBBB01900.15 BB01
2636kvd_J_DT264_DT265BBBBB01860.23 BB01
2646kvd_J_DT265_DT266BBBBB00630.24 BB00
2656kvd_J_DT266_DG267BB2BB07740.30 BB07
2666kvd_J_DG267_DG268BBBBB00660.19 BB00
2676kvd_J_DG268_DT269B-ABA08490.31 BA08
2686kvd_J_DT269_DA270BBBBB00160.39 BB00
2696kvd_J_DA270_DG271BBBBB00750.23 BB00
2706kvd_J_DG271_DA272BBBBB00630.32 BB00
2716kvd_J_DA272_DA273BBBBB00930.11 BB00
2726kvd_J_DA273_DT274BBwBB02680.23 BB02
2736kvd_J_DT274_DC275BBBBB00470.17 BB00
2746kvd_J_DC275_DT276BBBBB00720.19 BB00
2756kvd_J_DT276_DG277NANNANT00.54 BB08
2766kvd_J_DG277_DC278NANNANT00.58 BB15
2776kvd_J_DC278_DA279BB2BB07820.22 BB07
2786kvd_J_DA279_DG280NANNANT00.50 BB05
2796kvd_J_DG280_DG281B-ABA08360.45 BA08
2806kvd_J_DG281_DT282BBBBB01390.25 BB01
2816kvd_J_DT282_DG283BBBBB00900.15 BB00
2826kvd_J_DG283_DG284B12BB04910.15 BB04
2836kvd_J_DG284_DA285BBBBB00530.41 BB00
2846kvd_J_DA285_DT286miBBB15500.27 BB15
2856kvd_J_DT286_DA287miBBB15520.35 BB15
2866kvd_J_DA287_DT288BBBBB00750.23 BB00
2876kvd_J_DT288_DT289BBBBB00630.21 BB00
2886kvd_J_DT289_DG290BBBBB00820.22 BB00
2896kvd_J_DG290_DA291B12BB04910.21 BB04
2906kvd_J_DA291_DT292B-ABA01430.28 BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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Color by NtC (balls)

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