Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016ke9_I_DA-72_DT-71NANNANT00.88 BB03
0026ke9_I_DT-71_DC-70NANNANT00.37 BA08
0036ke9_I_DC-70_DT-69NANNANT00.56 IC04
0046ke9_I_DT-69_DT-68BBBBB01380.23 BB01
0056ke9_I_DT-68_DA-67NANNANT00.51 BB05
0066ke9_I_DA-67_DG-66BBBBB00650.31 BB00
0076ke9_I_DG-66_DG-65B12BB04360.32 BB04
0086ke9_I_DG-65_DG-64B12BB04250.33 BB04
0096ke9_I_DG-64_DT-63B-ABA01120.19 BA01
0106ke9_I_DT-63_DT-62AAAAA02330.45 AA02
0116ke9_I_DT-62_DA-61NANNANT00.52 AA02
0126ke9_I_DA-61_DG-60BBBBB01110.34 BB01
0136ke9_I_DG-60_DG-59BBBBB00150.48 BB00
0146ke9_I_DG-59_DG-58NANNANT00.53 BB04
0156ke9_I_DG-58_DT-57BBBBB00190.38 BB00
0166ke9_I_DT-57_DT-56B12BB04590.28 BB04
0176ke9_I_DT-56_DA-55B12BB04100.59 BB04
0186ke9_I_DA-55_DG-54BB2BB07320.47 BB07
0196ke9_I_DG-54_DG-53BBBBB00190.54 BB00
0206ke9_I_DG-53_DG-52BB2BB07360.46 BB07
0216ke9_I_DG-52_DT-51B-ABA0170.33 BA01
0226ke9_I_DT-51_DT-50AAAAA00310.39 AA00
0236ke9_I_DT-50_DA-49A-BAB05100.21 AB05
0246ke9_I_DA-49_DG-48BBBBB00240.45 BB00
0256ke9_I_DG-48_DG-47NANNANT00.62 BB10
0266ke9_I_DG-47_DG-46BBBBB0080.45 BB00
0276ke9_I_DG-46_DT-45B12BB04640.27 BB04
0286ke9_I_DT-45_DT-44B12BB04130.38 BB04
0296ke9_I_DT-44_DA-43B12BB04560.29 BB04
0306ke9_I_DA-43_DG-42BBBBB00350.41 BB00
0316ke9_I_DG-42_DG-41NANNANT00.35 BA08
0326ke9_I_DG-41_DG-40NANNANT00.49 AB04
0336ke9_I_DG-40_DT-39NANNANT00.42 BA08
0346ke9_I_DT-39_DT-38BBBBB01270.27 BB01
0356ke9_I_DT-38_DA-37BBBBB00360.38 BB00
0366ke9_I_DA-37_DG-36B12BB04400.34 BB04
0376ke9_I_DG-36_DG-35BB2BB07580.28 BB07
0386ke9_I_DG-35_DG-34BBBBB00150.16 BB00
0396ke9_I_DG-34_DT-33BB2BB07310.42 BB07
0406ke9_I_DT-33_DT-32NANNANT00.35 BA05
0416ke9_I_DT-32_DA-31A-BAB05290.30 AB05
0426ke9_I_DA-31_DG-30NANNANT00.45 BA01
0436ke9_I_DG-30_DG-29AAAAA08170.58 AA08
0446ke9_I_DG-29_DG-28A-BAB05380.52 AB05
0456ke9_I_DG-28_DT-27BBBBB00530.48 BB00
0466ke9_I_DT-27_DT-26BB2BB0770.32 BB07
0476ke9_I_DT-26_DA-25NANNANT00.43 BB15
0486ke9_I_DA-25_DG-24BB2BB07150.28 BB07
0496ke9_I_DG-24_DG-23BBBBB00290.32 BB00
0506ke9_I_DG-23_DG-22BBBBB00240.27 BB00
0516ke9_I_DG-22_DT-21B-ABA01150.22 BA01
0526ke9_I_DT-21_DT-20AAAAA00450.37 AA00
0536ke9_I_DT-20_DA-19AAAAA00750.24 AA00
0546ke9_I_DA-19_DG-18NANNANT00.39 AA08
0556ke9_I_DG-18_DG-17NANNANT00.46 AB03
0566ke9_I_DG-17_DG-16NANNANT00.34 BB04
0576ke9_I_DG-16_DT-15B12BB04300.49 BB04
0586ke9_I_DT-15_DT-14BBBBB00460.34 BB00
0596ke9_I_DT-14_DA-13B-ABA08530.36 BA08
0606ke9_I_DA-13_DG-12A-BAB03660.33 AB03
0616ke9_I_DG-12_DG-11BBBBB00670.23 BB00
0626ke9_I_DG-11_DG-10B12BB04700.16 BB04
0636ke9_I_DG-10_DT-9NANNANT00.34 BB10
0646ke9_I_DT-9_DT-8NANNANT00.53 BB17
0656ke9_I_DT-8_DA-7BBBBB01180.35 BB01
0666ke9_I_DA-7_DG-6BB2BB07440.43 BB07
0676ke9_I_DG-6_DG-5NANNANT00.53 BB02
0686ke9_I_DG-5_DG-4BB2BB07430.34 BB07
0696ke9_I_DG-4_DT-3BBBBB00570.29 BB00
0706ke9_I_DT-3_DT-2BBBBB00470.30 BB00
0716ke9_I_DT-2_DA-1B-ABA08620.32 BA08
0726ke9_I_DA-1_DG0AAAAA00550.31 AA00
0736ke9_I_DG0_DG1NANNANT00.39 AB03
0746ke9_I_DG1_DG2miBBB15340.37 BB15
0756ke9_I_DG2_DT3BBBBB00120.58 BB00
0766ke9_I_DT3_DT4BBBBB01700.16 BB01
0776ke9_I_DT4_DA5miBBB15340.44 BB15
0786ke9_I_DA5_DG6NANNANT00.67 BB10
0796ke9_I_DG6_DG7NANNANT00.60 BB08
0806ke9_I_DG7_DG8NANNANT00.51 BB00
0816ke9_I_DG8_DT9B-ABA17640.38 BA17
0826ke9_I_DT9_DT10NANNANT00.44 BB15
0836ke9_I_DT10_DA11NANNANT00.45 BB10
0846ke9_I_DA11_DG12NANNANT00.53 BB15
0856ke9_I_DG12_DG13NANNANT00.63 BB10
0866ke9_I_DG13_DG14NANNANT00.65 BA08
0876ke9_I_DG14_DT15NANNANT00.69 BB07
0886ke9_I_DT15_DT16NANNANT00.60 BB15
0896ke9_I_DT16_DA17NANNANT00.38 BB04
0906ke9_I_DA17_DG18BBBBB01210.30 BB01
0916ke9_I_DG18_DG19miBBB12420.57 BB12
0926ke9_I_DG19_DG20BBwBB16590.49 BB16
0936ke9_I_DG20_DT21miBBB15710.36 BB15
0946ke9_I_DT21_DT22NANNANT00.43 BA09
0956ke9_I_DT22_DA23NANNANT00.33 AB04
0966ke9_I_DA23_DG24BBBBB00460.31 BB00
0976ke9_I_DG24_DG25A-BAB03140.34 AB03
0986ke9_I_DG25_DG26BB2BB07250.52 BB07
0996ke9_I_DG26_DT27BBwBB02660.17 BB02
1006ke9_I_DT27_DT28BBBBB00460.31 BB00
1016ke9_I_DT28_DA29BBBBB00130.34 BB00
1026ke9_I_DA29_DG30B-ABA17160.63 BA17
1036ke9_I_DG30_DG31miBBB15290.45 BB15
1046ke9_I_DG31_DG32B12BB04140.16 BB04
1056ke9_I_DG32_DT33BBBBB00190.40 BB00
1066ke9_I_DT33_DT34BBBBB00400.27 BB00
1076ke9_I_DT34_DA35B12BB04200.38 BB04
1086ke9_I_DA35_DG36B12BB04630.33 BB04
1096ke9_I_DG36_DG37BB2BB07610.26 BB07
1106ke9_I_DG37_DG38BBBBB00620.34 BB00
1116ke9_I_DG38_DT39BBBBB00450.35 BB00
1126ke9_I_DT39_DT40B-ABA01230.28 BA01
1136ke9_I_DT40_DA41AAAAA00520.29 AA00
1146ke9_I_DA41_DG42A-BAB05680.28 AB05
1156ke9_I_DG42_DG43B12BB04270.30 BB04
1166ke9_I_DG43_DG44BBBBB01590.19 BB01
1176ke9_I_DG44_DT45BBBBB01580.31 BB01
1186ke9_I_DT45_DT46BB2BB07430.23 BB07
1196ke9_I_DT46_DA47B12BB04390.34 BB04
1206ke9_I_DA47_DG48BBBBB00450.33 BB00
1216ke9_I_DG48_DG49BB2BB07580.23 BB07
1226ke9_I_DG49_DG50B12BB04330.36 BB04
1236ke9_I_DG50_DT51B-ABA08350.36 BA08
1246ke9_I_DT51_DT52NANNANT00.50 AB04
1256ke9_I_DT52_DA53BBBBB00200.30 BB00
1266ke9_I_DA53_DG54NANNANT00.53 BB04
1276ke9_I_DG54_DG55BBBBB00250.36 BB00
1286ke9_I_DG55_DG56B-ABA17700.30 BA17
1296ke9_I_DG56_DT57miBBB10390.42 BB10
1306ke9_I_DT57_DT58BBBBB01370.33 BB01
1316ke9_I_DT58_DA59BBBBB00120.30 BB00
1326ke9_I_DA59_DG60BBBBB00240.33 BB00
1336ke9_I_DG60_DG61BBBBB00420.41 BB00
1346ke9_I_DG61_DG62NANNANT00.47 BA05
1356ke9_I_DG62_DT63NANNANT00.48 AA04
1366ke9_I_DT63_DT64AAAAA02270.61 AA02
1376ke9_I_DT64_DA65NANNANT00.35 AA02
1386ke9_I_DA65_DG66BBBBB01160.41 BB01
1396ke9_I_DG66_DG67B-ABA01260.30 BA01
1406ke9_I_DG67_DG68A-BAB01450.30 AB01
1416ke9_I_DG68_DT69B-ABA08710.35 BA08
1426ke9_I_DT69_DG70BBwBB16340.50 BB16
1436ke9_I_DG70_DA71NANNANT00.41 BB04
1446ke9_I_DA71_DT72NANNANT00.43 BB03
1456ke9_J_DA-72_DT-71NANNANT00.56 BB11
1466ke9_J_DT-71_DC-70NANNANT00.70 BB13
1476ke9_J_DC-70_DA-69BBwBB02270.51 BB02
1486ke9_J_DA-69_DC-68BBBBB0090.38 BB00
1496ke9_J_DC-68_DC-67NANNANT00.37 BB07
1506ke9_J_DC-67_DC-66NANNANT00.48 BA08
1516ke9_J_DC-66_DT-65A-BAB01610.26 AB01
1526ke9_J_DT-65_DA-64B12BB04310.37 BB04
1536ke9_J_DA-64_DA-63BBBBB00610.24 BB00
1546ke9_J_DA-63_DC-62B-ABA08710.24 BA08
1556ke9_J_DC-62_DC-61AAAAA00800.24 AA00
1566ke9_J_DC-61_DC-60A-BAB05290.29 AB05
1576ke9_J_DC-60_DT-59B12BB04430.35 BB04
1586ke9_J_DT-59_DA-58B-ABA01410.32 BA01
1596ke9_J_DA-58_DA-57A-BAB01250.37 AB01
1606ke9_J_DA-57_DC-56B12BB04220.42 BB04
1616ke9_J_DC-56_DC-55B12BB04810.26 BB04
1626ke9_J_DC-55_DC-54B-ABA08570.47 BA08
1636ke9_J_DC-54_DT-53NANNANT00.51 BB00
1646ke9_J_DT-53_DA-52NANNANT00.40 BA08
1656ke9_J_DA-52_DA-51NANNANT00.54 AA10
1666ke9_J_DA-51_DC-50AAAAA08820.22 AA08
1676ke9_J_DC-50_DC-49NANNANT00.51 AB04
1686ke9_J_DC-49_DC-48B12BB04190.39 BB04
1696ke9_J_DC-48_DT-47B-ABA08520.48 BA08
1706ke9_J_DT-47_DA-46BBBBB00210.36 BB00
1716ke9_J_DA-46_DA-45B12BB04580.38 BB04
1726ke9_J_DA-45_DC-44B12BB04790.27 BB04
1736ke9_J_DC-44_DC-43B12BB04240.32 BB04
1746ke9_J_DC-43_DC-42BBBBB00530.30 BB00
1756ke9_J_DC-42_DT-41B-ABA05730.20 BA05
1766ke9_J_DT-41_DA-40A-BAB01160.40 AB01
1776ke9_J_DA-40_DA-39BBBBB00110.39 BB00
1786ke9_J_DA-39_DC-38B-ABA05410.27 BA05
1796ke9_J_DC-38_DC-37A-BAB05290.23 AB05
1806ke9_J_DC-37_DC-36BB2BB07390.32 BB07
1816ke9_J_DC-36_DT-35B-ABA08280.46 BA08
1826ke9_J_DT-35_DA-34BBBBB00150.37 BB00
1836ke9_J_DA-34_DA-33B-ABA08550.27 BA08
1846ke9_J_DA-33_DC-32AAAAA04350.41 AA04
1856ke9_J_DC-32_DC-31AAAAA00710.37 AA00
1866ke9_J_DC-31_DC-30A-BAB05190.23 AB05
1876ke9_J_DC-30_DT-29BBBBB00510.34 BB00
1886ke9_J_DT-29_DA-28BB2BB07110.46 BB07
1896ke9_J_DA-28_DA-27NANNANT00.40 BB16
1906ke9_J_DA-27_DC-26NANNANT00.38 BA17
1916ke9_J_DC-26_DC-25A-BAB01480.39 AB01
1926ke9_J_DC-25_DC-24B-ABA17550.30 BA17
1936ke9_J_DC-24_DT-23NANNANT00.26 AB03
1946ke9_J_DT-23_DA-22B-ABA01180.27 BA01
1956ke9_J_DA-22_DA-21AAAAA02470.48 AA02
1966ke9_J_DA-21_DC-20NANNANT00.47 AA04
1976ke9_J_DC-20_DC-19A-BAB04210.42 AB04
1986ke9_J_DC-19_DC-18NANNANT00.67 BB02
1996ke9_J_DC-18_DT-17miBBB12260.51 BB12
2006ke9_J_DT-17_DA-16NANNANT00.73 AB02
2016ke9_J_DA-16_DA-15BB2BB07290.38 BB07
2026ke9_J_DA-15_DC-14BBBBB01700.25 BB01
2036ke9_J_DC-14_DC-13BBBBB00120.38 BB00
2046ke9_J_DC-13_DC-12BBBBB00650.26 BB00
2056ke9_J_DC-12_DT-11B12BB04370.27 BB04
2066ke9_J_DT-11_DA-10BBBBB00110.42 BB00
2076ke9_J_DA-10_DA-9B-ABA08290.55 BA08
2086ke9_J_DA-9_DC-8AAAAA08550.31 AA08
2096ke9_J_DC-8_DC-7A-BAB01310.34 AB01
2106ke9_J_DC-7_DC-6B12BB04260.27 BB04
2116ke9_J_DC-6_DT-5BBBBB00530.36 BB00
2126ke9_J_DT-5_DA-4BB2BB07110.31 BB07
2136ke9_J_DA-4_DA-3BBBBB01110.31 BB01
2146ke9_J_DA-3_DC-2BBBBB00860.25 BB00
2156ke9_J_DC-2_DC-1B-ABA08690.41 BA08
2166ke9_J_DC-1_DC0BBBBB01400.28 BB01
2176ke9_J_DC0_DT1B-ABA05630.33 BA05
2186ke9_J_DT1_DA2A-BAB03820.15 AB03
2196ke9_J_DA2_DA3B-ABA08780.39 BA08
2206ke9_J_DA3_DC4A-BAB05490.24 AB05
2216ke9_J_DC4_DC5NANNANT00.53 BB10
2226ke9_J_DC5_DC6BB2BB07530.38 BB07
2236ke9_J_DC6_DT7B12BB04150.49 BB04
2246ke9_J_DT7_DA8B12BB04200.39 BB04
2256ke9_J_DA8_DA9BBBBB00710.34 BB00
2266ke9_J_DA9_DC10BBBBB01650.19 BB01
2276ke9_J_DC10_DC11BBBBB00240.32 BB00
2286ke9_J_DC11_DC12BBBBB00340.28 BB00
2296ke9_J_DC12_DT13miBBB10520.41 BB10
2306ke9_J_DT13_DA14B12BB04520.35 BB04
2316ke9_J_DA14_DA15B12BB04160.40 BB04
2326ke9_J_DA15_DC16NANNANT00.46 BB10
2336ke9_J_DC16_DC17BB2BB07370.33 BB07
2346ke9_J_DC17_DC18B12BB04490.39 BB04
2356ke9_J_DC18_DT19B-ABA01270.32 BA01
2366ke9_J_DT19_DA20A-BAB01420.31 AB01
2376ke9_J_DA20_DA21B-ABA10190.27 BA10
2386ke9_J_DA21_DC22AAAAA08860.20 AA08
2396ke9_J_DC22_DC23AAAAA08350.35 AA08
2406ke9_J_DC23_DC24A-BAB01450.30 AB01
2416ke9_J_DC24_DT25miBBB10590.37 BB10
2426ke9_J_DT25_DA26BB2BB07330.32 BB07
2436ke9_J_DA26_DA27BBBBB00590.18 BB00
2446ke9_J_DA27_DC28B-ABA08730.39 BA08
2456ke9_J_DC28_DC29A-BAB03720.22 AB03
2466ke9_J_DC29_DC30BB2BB07240.33 BB07
2476ke9_J_DC30_DT31BBBBB00140.64 BB00
2486ke9_J_DT31_DA32B12BB04230.51 BB04
2496ke9_J_DA32_DA33BBBBB00370.27 BB00
2506ke9_J_DA33_DC34NANNANT00.47 BA08
2516ke9_J_DC34_DC35A-BAB01640.28 AB01
2526ke9_J_DC35_DC36BB2BB07160.37 BB07
2536ke9_J_DC36_DT37B12BB04400.26 BB04
2546ke9_J_DT37_DA38B-ABA08150.47 BA08
2556ke9_J_DA38_DA39A-BAB01130.36 AB01
2566ke9_J_DA39_DC40B-ABA01270.24 BA01
2576ke9_J_DC40_DC41AAAAA00520.34 AA00
2586ke9_J_DC41_DC42NANNANT00.37 AB04
2596ke9_J_DC42_DT43BBBBB00140.35 BB00
2606ke9_J_DT43_DA44B-ABA08660.21 BA08
2616ke9_J_DA44_DA45A-BAB01110.44 AB01
2626ke9_J_DA45_DC46BBBBB00850.24 BB00
2636ke9_J_DC46_DC47B12BB04480.32 BB04
2646ke9_J_DC47_DC48BBBBB00560.31 BB00
2656ke9_J_DC48_DT49B12BB04530.18 BB04
2666ke9_J_DT49_DA50BBBBB00680.28 BB00
2676ke9_J_DA50_DA51B-ABA01560.33 BA01
2686ke9_J_DA51_DC52NANNANT00.47 AA00
2696ke9_J_DC52_DC53A-BAB01150.44 AB01
2706ke9_J_DC53_DC54B-ABA08660.38 BA08
2716ke9_J_DC54_DT55A-BAB03640.26 AB03
2726ke9_J_DT55_DA56BB2BB07430.31 BB07
2736ke9_J_DA56_DA57B12BB04370.24 BB04
2746ke9_J_DA57_DC58BBBBB00270.32 BB00
2756ke9_J_DC58_DC59BBBBB00160.29 BB00
2766ke9_J_DC59_DC60BBBBB01520.28 BB01
2776ke9_J_DC60_DT61B-ABA05210.37 BA05
2786ke9_J_DT61_DA62NANNANT00.45 BB01
2796ke9_J_DA62_DA63BBBBB01130.36 BB01
2806ke9_J_DA63_DC64B-ABA0170.32 BA01
2816ke9_J_DC64_DC65A-BAB01410.31 AB01
2826ke9_J_DC65_DC66BBBBB01130.35 BB01
2836ke9_J_DC66_DT67BBBBB00470.43 BB00
2846ke9_J_DT67_DA68NANNANT00.48 BB05
2856ke9_J_DA68_DA69NANNANT00.64 BB02
2866ke9_J_DA69_DG70BBBBB00310.26 BB00
2876ke9_J_DG70_DA71NANNANT00.65 BA05
2886ke9_J_DA71_DT72BBwBB03240.48 BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N