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Conformers: ABBIImiBZICOPNSYNN
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Human nucleosome core particle with cohesive end DNA termini

Results of the assignment of 292 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016jxd_I_DC-71_DA-70BBBBB00390.27 BB00
0026jxd_I_DA-70_DT-69miBBB15220.30 BB15
0036jxd_I_DT-69_DA-68B12BB04430.17 BB04
0046jxd_I_DA-68_DT-67miBBB10640.24 BB10
0056jxd_I_DT-67_DA-66NANNANT00.64 BB17
0066jxd_I_DA-66_DT-65A-BAB03680.29 AB03
0076jxd_I_DT-65_DC-64miBBB15660.28 BB15
0086jxd_I_DC-64_DC-63NANNANT00.31 BB10
0096jxd_I_DC-63_DC-62NANNANT00.43 BA08
0106jxd_I_DC-62_DG-61NANNANT00.61 BB03
0116jxd_I_DG-61_DG-60BBBBB00310.37 BB00
0126jxd_I_DG-60_DT-59B-ABA08550.43 BA08
0136jxd_I_DT-59_DG-58A-BAB03740.22 AB03
0146jxd_I_DG-58_DC-57miBBB15350.46 BB15
0156jxd_I_DC-57_DC-56miBBB10370.30 BB10
0166jxd_I_DC-56_DG-55BB2BB07410.27 BB07
0176jxd_I_DG-55_DA-54B12BB04440.34 BB04
0186jxd_I_DA-54_DG-53BBBBB00450.36 BB00
0196jxd_I_DG-53_DG-52BB2BB07170.20 BB07
0206jxd_I_DG-52_DC-51B12BB04440.30 BB04
0216jxd_I_DC-51_DC-50BBBBB00890.18 BB00
0226jxd_I_DC-50_DG-49NANNANT00.29 BB10
0236jxd_I_DG-49_DC-48NANNANT00.64 BB07
0246jxd_I_DC-48_DT-47BBBBB00560.26 BB00
0256jxd_I_DT-47_DC-46NANNANT00.55 BB08
0266jxd_I_DC-46_DA-45NANNANT00.49 BB04
0276jxd_I_DA-45_DA-44NANNANT00.53 BB07
0286jxd_I_DA-44_DT-43BBBBB00250.29 BB00
0296jxd_I_DT-43_DT-42BBwBB02670.22 BB02
0306jxd_I_DT-42_DG-41miBBB15470.50 BB15
0316jxd_I_DG-41_DG-40B12BB04410.21 BB04
0326jxd_I_DG-40_DT-39BBBBB00440.42 BB00
0336jxd_I_DT-39_DC-38A-BAB03180.30 AB03
0346jxd_I_DC-38_DG-37NANNANT00.42 BB15
0356jxd_I_DG-37_DT-36NANNANT00.36 BB15
0366jxd_I_DT-36_DA-35BB2BB07490.24 BB07
0376jxd_I_DA-35_DG-34BBBBB00490.27 BB00
0386jxd_I_DG-34_DA-33NANNANT00.46 BB10
0396jxd_I_DA-33_DC-32B-ABA05590.23 BA05
0406jxd_I_DC-32_DA-31A-BAB03650.27 AB03
0416jxd_I_DA-31_DG-30B-ABA05460.40 BA05
0426jxd_I_DG-30_DC-29BBBBB00240.27 BB00
0436jxd_I_DC-29_DT-28BBBBB00190.29 BB00
0446jxd_I_DT-28_DC-27BBBBB00180.31 BB00
0456jxd_I_DC-27_DT-26BB2BB07620.38 BB07
0466jxd_I_DT-26_DA-25BBBBB00680.32 BB00
0476jxd_I_DA-25_DG-24BB2BB07640.22 BB07
0486jxd_I_DG-24_DC-23BBBBB01900.09 BB01
0496jxd_I_DC-23_DA-22miBBB15610.25 BB15
0506jxd_I_DA-22_DC-21B12BB04600.28 BB04
0516jxd_I_DC-21_DC-20BBBBB00350.43 BB00
0526jxd_I_DC-20_DG-19NANNANT00.34 BB10
0536jxd_I_DG-19_DC-18BB2BB08340.42 BB08
0546jxd_I_DC-18_DT-17BBBBB00520.47 BB00
0556jxd_I_DT-17_DT-16NANNANT00.56 BA16
0566jxd_I_DT-16_DA-15NANNANT00.44 BB04
0576jxd_I_DA-15_DA-14B12BB04300.30 BB04
0586jxd_I_DA-14_DA-13B12BB04620.16 BB04
0596jxd_I_DA-13_DC-12BBBBB01920.11 BB01
0606jxd_I_DC-12_DG-11BBBBB00360.25 BB00
0616jxd_I_DG-11_DC-10miBBB10560.28 BB10
0626jxd_I_DC-10_DA-9miBBB10750.23 BB10
0636jxd_I_DA-9_DC-8B12BB04840.17 BB04
0646jxd_I_DC-8_DG-7B12BB04600.43 BB04
0656jxd_I_DG-7_DT-6BB2BB07620.20 BB07
0666jxd_I_DT-6_DA-5BB2BB07490.29 BB07
0676jxd_I_DA-5_DC-4BB2BB07420.33 BB07
0686jxd_I_DC-4_DG-3BBBBB00270.54 BB00
0696jxd_I_DG-3_DC-2NANNANT00.50 AB02
0706jxd_I_DC-2_DG-1A-BAB03470.31 AB03
0716jxd_I_DG-1_DC0BBwBB02400.34 BB02
0726jxd_I_DC0_DT1NANNANT00.44 BB10
0736jxd_I_DT1_DG2BBBBB00870.23 BB00
0746jxd_I_DG2_DT3BBBBB00360.29 BB00
0756jxd_I_DT3_DC4NANNANT00.31 BB17
0766jxd_I_DC4_DT5BB2BB07240.34 BB07
0776jxd_I_DT5_DA6BB2BB07640.24 BB07
0786jxd_I_DA6_DC7B12BB04430.31 BB04
0796jxd_I_DC7_DC8B12BB04840.20 BB04
0806jxd_I_DC8_DG9BBBBB00760.19 BB00
0816jxd_I_DG9_DC10BBBBB00520.23 BB00
0826jxd_I_DC10_DG11BB2BB07620.24 BB07
0836jxd_I_DG11_DT12miBBB15670.22 BB15
0846jxd_I_DT12_DT13BBBBB01710.25 BB01
0856jxd_I_DT13_DT14BBwBB02360.28 BB02
0866jxd_I_DT14_DT15BBBBB00370.20 BB00
0876jxd_I_DT15_DA16B12BB04660.33 BB04
0886jxd_I_DA16_DA17BB2BB07700.32 BB07
0896jxd_I_DA17_DC18BBBBB01740.25 BB01
0906jxd_I_DC18_DC19BBBBB00210.22 BB00
0916jxd_I_DC19_DG20NANNANT00.36 BB10
0926jxd_I_DG20_DC21NANNANT00.58 AB02
0936jxd_I_DC21_DC22AAwAA06490.25 AA06
0946jxd_I_DC22_DA23NANNANT00.56 AA03
0956jxd_I_DA23_DC24BBBBB00580.25 BB00
0966jxd_I_DC24_DT25B12BB04700.29 BB04
0976jxd_I_DT25_DA26BB2BB07790.26 BB07
0986jxd_I_DA26_DG27BBBBB00610.32 BB00
0996jxd_I_DG27_DA28BB2BB07450.26 BB07
1006jxd_I_DA28_DA29BBBBB00360.26 BB00
1016jxd_I_DA29_DG30miBBB10620.32 BB10
1026jxd_I_DG30_DC31BBBBB00510.30 BB00
1036jxd_I_DC31_DG32B12BB04770.27 BB04
1046jxd_I_DG32_DC33B12BB04580.20 BB04
1056jxd_I_DC33_DT34NANNANT00.38 BB10
1066jxd_I_DT34_DT35NANNANT00.49 BB15
1076jxd_I_DT35_DA36NANNANT00.68 BB08
1086jxd_I_DA36_DC37NANNANT00.76 BB07
1096jxd_I_DC37_DT38B12BB04220.36 BB04
1106jxd_I_DT38_DA39B12BB04330.23 BB04
1116jxd_I_DA39_DG40B12BB0490.39 BB04
1126jxd_I_DG40_DT41miBBB15340.24 BB15
1136jxd_I_DT41_DC42BBwBB02180.30 BB02
1146jxd_I_DC42_DT43BBBBB00430.28 BB00
1156jxd_I_DT43_DC44BBBBB01290.16 BB01
1166jxd_I_DC44_DC45A-BAB02790.32 AB02
1176jxd_I_DC45_DA46B12BB04580.19 BB04
1186jxd_I_DA46_DG47BB2BB07390.24 BB07
1196jxd_I_DG47_DG48BBBBB00640.19 BB00
1206jxd_I_DG48_DC49B-ABA08700.32 BA08
1216jxd_I_DC49_DA50NANNANT00.39 AB02
1226jxd_I_DA50_DC51BBwBB02190.21 BB02
1236jxd_I_DC51_DG52BBBBB00440.20 BB00
1246jxd_I_DG52_DT53BBwBB02850.20 BB02
1256jxd_I_DT53_DG54NANNANT00.42 BB10
1266jxd_I_DG54_DT55NANNANT00.50 AB02
1276jxd_I_DT55_DG56BB2BB07700.26 BB07
1286jxd_I_DG56_DA57B12BB04720.29 BB04
1296jxd_I_DA57_DG58BBBBB00600.27 BB00
1306jxd_I_DG58_DA59BB2BB07270.31 BB07
1316jxd_I_DA59_DC60BBBBB00620.20 BB00
1326jxd_I_DC60_DC61NANNANT00.35 BB10
1336jxd_I_DC61_DG62BB2BB07810.21 BB07
1346jxd_I_DG62_DG63miBBB15420.38 BB15
1356jxd_I_DG63_DC64NANNANT00.31 BA17
1366jxd_I_DC64_DA65BBBBB00890.20 BB00
1376jxd_I_DA65_DT66BBBBB00860.20 BB00
1386jxd_I_DT66_DA67B12BB04150.26 BB04
1396jxd_I_DA67_DT68BBBBB00590.20 BB00
1406jxd_I_DT68_DA69B12BB04860.16 BB04
1416jxd_I_DA69_DT70BBBBB00550.22 BB00
1426jxd_I_DT70_DG71BBBBB00630.29 BB00
1436jxd_I_DG71_DG72NANNANT00.41 BB10
1446jxd_I_DG72_DT73BBBBB00580.23 BB00
1456jxd_I_DT73_DA74BB2BB07300.26 BB07
1466jxd_I_DA74_DC75BB2BB08650.32 BB08
1476jxd_J_DC-71_DA-70NANNANT00.63 BB16
1486jxd_J_DA-70_DT-69miBBB15660.24 BB15
1496jxd_J_DT-69_DA-68BBBBB00590.25 BB00
1506jxd_J_DA-68_DT-67BBBBB00460.23 BB00
1516jxd_J_DT-67_DA-66BB2BB07230.28 BB07
1526jxd_J_DA-66_DT-65BBBBB00460.16 BB00
1536jxd_J_DT-65_DG-64miBBB10380.35 BB10
1546jxd_J_DG-64_DC-63BBBBB00550.19 BB00
1556jxd_J_DC-63_DC-62miBBB15640.32 BB15
1566jxd_J_DC-62_DG-61BBBBB00550.38 BB00
1576jxd_J_DG-61_DG-60BBBBB00400.39 BB00
1586jxd_J_DG-60_DT-59NANNANT00.38 BB10
1596jxd_J_DT-59_DC-58B-ABA08610.46 BA08
1606jxd_J_DC-58_DT-57NANNANT00.37 AB03
1616jxd_J_DT-57_DC-56BB2BB07390.32 BB07
1626jxd_J_DC-56_DA-55BB2BB07640.28 BB07
1636jxd_J_DA-55_DC-54B12BB04370.21 BB04
1646jxd_J_DC-54_DA-53B12BB04310.58 BB04
1656jxd_J_DA-53_DC-52miBBB10340.49 BB10
1666jxd_J_DC-52_DG-51A-BAB03600.34 AB03
1676jxd_J_DG-51_DT-50BBBBB00640.31 BB00
1686jxd_J_DT-50_DG-49miBBB12630.56 BB12
1696jxd_J_DG-49_DC-48NANNANT00.48 BB10
1706jxd_J_DC-48_DC-47miBBB14660.25 BB14
1716jxd_J_DC-47_DT-46BB2BB07230.28 BB07
1726jxd_J_DT-46_DG-45NANNANT00.37 BB07
1736jxd_J_DG-45_DG-44NANNANT00.71 BA09
1746jxd_J_DG-44_DA-43NANNANT00.62 IC06
1756jxd_J_DA-43_DG-42NANNANT00.51 BB11
1766jxd_J_DG-42_DA-41NANNANT00.75 BB12
1776jxd_J_DA-41_DC-40BBBBB00200.54 BB00
1786jxd_J_DC-40_DT-39BBBBB00440.36 BB00
1796jxd_J_DT-39_DA-38miBBB10700.30 BB10
1806jxd_J_DA-38_DG-37BB2BB07360.47 BB07
1816jxd_J_DG-37_DT-36BB2BB07440.29 BB07
1826jxd_J_DT-36_DA-35BB2BB07730.39 BB07
1836jxd_J_DA-35_DA-34BBBBB00360.28 BB00
1846jxd_J_DA-34_DG-33BB2BB07540.15 BB07
1856jxd_J_DG-33_DC-32miBBB10460.27 BB10
1866jxd_J_DC-32_DG-31B-ABA13280.36 BA13
1876jxd_J_DG-31_DC-30A-BAB04610.29 AB04
1886jxd_J_DC-30_DT-29BBBBB00660.31 BB00
1896jxd_J_DT-29_DT-28BBBBB00520.23 BB00
1906jxd_J_DT-28_DC-27BBBBB00360.37 BB00
1916jxd_J_DC-27_DT-26BB2BB07210.40 BB07
1926jxd_J_DT-26_DA-25BBBBB00480.31 BB00
1936jxd_J_DA-25_DG-24BB2BB07670.23 BB07
1946jxd_J_DG-24_DT-23BBBBB01860.13 BB01
1956jxd_J_DT-23_DG-22BBBBB00130.20 BB00
1966jxd_J_DG-22_DG-21miBBB10570.36 BB10
1976jxd_J_DG-21_DC-20BBBBB00700.32 BB00
1986jxd_J_DC-20_DG-19NANNANT00.45 BB15
1996jxd_J_DG-19_DG-18NANNANT00.46 BB15
2006jxd_J_DG-18_DT-17BBBBB00180.37 BB00
2016jxd_J_DT-17_DT-16BBBBB00680.21 BB00
2026jxd_J_DT-16_DA-15BB2BB07680.28 BB07
2036jxd_J_DA-15_DA-14B12BB04710.23 BB04
2046jxd_J_DA-14_DA-13BBBBB00960.17 BB00
2056jxd_J_DA-13_DA-12BBBBB00790.12 BB00
2066jxd_J_DA-12_DC-11BBBBB00650.20 BB00
2076jxd_J_DC-11_DG-10BBBBB00220.19 BB00
2086jxd_J_DG-10_DC-9B12BB0490.34 BB04
2096jxd_J_DC-9_DG-8BBBBB00620.22 BB00
2106jxd_J_DG-8_DG-7BBBBB00550.20 BB00
2116jxd_J_DG-7_DT-6BB2BB07730.17 BB07
2126jxd_J_DT-6_DA-5BB2BB07190.32 BB07
2136jxd_J_DA-5_DG-4BB2BB07600.25 BB07
2146jxd_J_DG-4_DA-3B12BB04810.17 BB04
2156jxd_J_DA-3_DC-2BBBBB01460.28 BB01
2166jxd_J_DC-2_DA-1miBBB15350.38 BB15
2176jxd_J_DA-1_DG0miBBB10750.29 BB10
2186jxd_J_DG0_DC1BBwBB02580.23 BB02
2196jxd_J_DC1_DG2miBBB10280.36 BB10
2206jxd_J_DG2_DC3B12BB04420.23 BB04
2216jxd_J_DC3_DG4BBBBB00780.18 BB00
2226jxd_J_DG4_DT5NANNANT00.33 BB15
2236jxd_J_DT5_DA6BB2BB07430.29 BB07
2246jxd_J_DA6_DC7B-ABA10280.33 BA10
2256jxd_J_DC7_DG8A-BAB02520.44 AB02
2266jxd_J_DG8_DT9BBwBB02820.23 BB02
2276jxd_J_DT9_DG10BBBBB00730.29 BB00
2286jxd_J_DG10_DC11BBBBB00140.31 BB00
2296jxd_J_DC11_DG12BBBBB00330.34 BB00
2306jxd_J_DG12_DT13BBBBB00800.27 BB00
2316jxd_J_DT13_DT14miBBB15560.30 BB15
2326jxd_J_DT14_DT15BBwBB02240.32 BB02
2336jxd_J_DT15_DA16B12BB04110.32 BB04
2346jxd_J_DA16_DA17BB2BB07650.23 BB07
2356jxd_J_DA17_DG18miBBB15850.18 BB15
2366jxd_J_DG18_DC19BBBBB00100.33 BB00
2376jxd_J_DC19_DG20miBBB10200.31 BB10
2386jxd_J_DG20_DG21B-ABA05450.35 BA05
2396jxd_J_DG21_DT22A-BAB03800.25 AB03
2406jxd_J_DT22_DG23miBBB12880.31 BB12
2416jxd_J_DG23_DC24BBwBB16800.34 BB16
2426jxd_J_DC24_DT25BBBBB00820.25 BB00
2436jxd_J_DT25_DA26BB2BB07260.35 BB07
2446jxd_J_DA26_DG27BBBBB00690.35 BB00
2456jxd_J_DG27_DA28BB2BB07880.23 BB07
2466jxd_J_DA28_DG29NANNANT00.51 BB15
2476jxd_J_DG29_DC30BB2BB07220.41 BB07
2486jxd_J_DC30_DT31BBBBB00570.23 BB00
2496jxd_J_DT31_DG32miBBB10310.26 BB10
2506jxd_J_DG32_DT33B12BB04780.21 BB04
2516jxd_J_DT33_DC34BBBBB00330.36 BB00
2526jxd_J_DC34_DT35NANNANT00.38 BB08
2536jxd_J_DT35_DA36B12BB04130.61 BB04
2546jxd_J_DA36_DC37B12BB04110.34 BB04
2556jxd_J_DC37_DG38BB2BB07220.25 BB07
2566jxd_J_DG38_DA39B12BB04910.15 BB04
2576jxd_J_DA39_DC40NANNANT00.31 BB10
2586jxd_J_DC40_DC41NANNANT00.38 BB10
2596jxd_J_DC41_DA42miBBB15110.52 BB15
2606jxd_J_DA42_DA43NANNANT00.91 BB12
2616jxd_J_DA43_DT44BBwBB17150.36 BB17
2626jxd_J_DT44_DT45BBBBB00520.25 BB00
2636jxd_J_DT45_DG46B12BB04330.45 BB04
2646jxd_J_DG46_DA47BB2BB07650.37 BB07
2656jxd_J_DA47_DG48BBBBB00740.19 BB00
2666jxd_J_DG48_DC49B-ABA08540.28 BA08
2676jxd_J_DC49_DG50A-BAB03740.36 AB03
2686jxd_J_DG50_DG51BBwBB02460.26 BB02
2696jxd_J_DG51_DC52BBBBB00290.40 BB00
2706jxd_J_DC52_DC53BBBBB00570.27 BB00
2716jxd_J_DC53_DT54BBBBB00220.26 BB00
2726jxd_J_DT54_DC55NANNANT00.42 BB08
2736jxd_J_DC55_DG56BBBBB00150.54 BB00
2746jxd_J_DG56_DG57B12BB04740.26 BB04
2756jxd_J_DG57_DC58BBBBB00690.22 BB00
2766jxd_J_DC58_DA59BB2BB07820.22 BB07
2776jxd_J_DA59_DC60BBBBB00540.19 BB00
2786jxd_J_DC60_DC61miBBB15310.28 BB15
2796jxd_J_DC61_DG62BBBBB00750.18 BB00
2806jxd_J_DG62_DG63NANNANT00.40 BB15
2816jxd_J_DG63_DG64BBBBB00100.29 BB00
2826jxd_J_DG64_DA65NANNANT00.56 BB10
2836jxd_J_DA65_DT66NANNANT00.52 BB02
2846jxd_J_DT66_DA67BBBBB00510.35 BB00
2856jxd_J_DA67_DT68BBwBB02640.22 BB02
2866jxd_J_DT68_DA69BBBBB00530.30 BB00
2876jxd_J_DA69_DT70BBBBB00740.21 BB00
2886jxd_J_DT70_DG71BBBBB00750.21 BB00
2896jxd_J_DG71_DG72BBBBB00380.36 BB00
2906jxd_J_DG72_DT73BBBBB00690.16 BB00
2916jxd_J_DT73_DA74BB2BB07530.27 BB07
2926jxd_J_DA74_DC75miBBB10470.26 BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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