Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of CIC-HMG-ETV5-DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 80 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6jrp_B_DA1_DT2 | B12 | BB04 | 31 | 0.25 |
| 02 | 6jrp_B_DT2_DG3 | NAN | NANT | 0 | 0.56 |
| 03 | 6jrp_B_DG3_DA4 | BBB | BB00 | 60 | 0.38 |
| 04 | 6jrp_B_DA4_DA5 | B12 | BB04 | 54 | 0.44 |
| 05 | 6jrp_B_DA5_DT6 | NAN | NANT | 0 | 0.45 |
| 06 | 6jrp_B_DT6_DG7 | AAA | AA02 | 67 | 0.20 |
| 07 | 6jrp_B_DG7_DA8 | NAN | NANT | 0 | 0.47 |
| 08 | 6jrp_B_DA8_DA9 | BBB | BB00 | 70 | 0.17 |
| 09 | 6jrp_B_DA9_DA10 | B12 | BB04 | 54 | 0.28 |
| 10 | 6jrp_B_DA10_DA11 | B-A | BA05 | 40 | 0.25 |
| 11 | 6jrp_C_DT1_DT2 | B-A | BA05 | 60 | 0.26 |
| 12 | 6jrp_C_DT2_DT3 | NAN | NANT | 0 | 0.53 |
| 13 | 6jrp_C_DT3_DT4 | B-A | BA16 | 10 | 0.49 |
| 14 | 6jrp_C_DT4_DC5 | ICL | IC01 | 17 | 0.57 |
| 15 | 6jrp_C_DC5_DA6 | BBB | BB00 | 52 | 0.25 |
| 16 | 6jrp_C_DA6_DT7 | BBB | BB00 | 20 | 0.41 |
| 17 | 6jrp_C_DT7_DT8 | BB2 | BB07 | 54 | 0.29 |
| 18 | 6jrp_C_DT8_DC9 | BBB | BB01 | 62 | 0.28 |
| 19 | 6jrp_C_DC9_DA10 | BBB | BB00 | 41 | 0.25 |
| 20 | 6jrp_C_DA10_DT11 | BBB | BB00 | 64 | 0.21 |
| 21 | 6jrp_E_DA1_DT2 | B12 | BB04 | 35 | 0.25 |
| 22 | 6jrp_E_DT2_DG3 | BBB | BB01 | 22 | 0.37 |
| 23 | 6jrp_E_DG3_DA4 | BBB | BB00 | 56 | 0.35 |
| 24 | 6jrp_E_DA4_DA5 | B12 | BB04 | 42 | 0.50 |
| 25 | 6jrp_E_DA5_DT6 | NAN | NANT | 0 | 0.55 |
| 26 | 6jrp_E_DT6_DG7 | AAA | AA02 | 58 | 0.21 |
| 27 | 6jrp_E_DG7_DA8 | NAN | NANT | 0 | 0.46 |
| 28 | 6jrp_E_DA8_DA9 | BBB | BB00 | 73 | 0.17 |
| 29 | 6jrp_E_DA9_DA10 | B12 | BB04 | 47 | 0.37 |
| 30 | 6jrp_E_DA10_DA11 | B-A | BA05 | 38 | 0.31 |
| 31 | 6jrp_F_DT1_DT2 | B-A | BA05 | 58 | 0.28 |
| 32 | 6jrp_F_DT2_DT3 | NAN | NANT | 0 | 0.53 |
| 33 | 6jrp_F_DT3_DT4 | NAN | NANT | 0 | 0.49 |
| 34 | 6jrp_F_DT4_DC5 | NAN | NANT | 0 | 0.53 |
| 35 | 6jrp_F_DC5_DA6 | BBB | BB00 | 53 | 0.25 |
| 36 | 6jrp_F_DA6_DT7 | BBB | BB00 | 24 | 0.38 |
| 37 | 6jrp_F_DT7_DT8 | BB2 | BB07 | 55 | 0.29 |
| 38 | 6jrp_F_DT8_DC9 | B-A | BA05 | 73 | 0.28 |
| 39 | 6jrp_F_DC9_DA10 | BBB | BB00 | 32 | 0.28 |
| 40 | 6jrp_F_DA10_DT11 | BBB | BB00 | 65 | 0.17 |
| 41 | 6jrp_H_DA1_DT2 | B12 | BB04 | 33 | 0.21 |
| 42 | 6jrp_H_DT2_DG3 | B-A | BA05 | 10 | 0.58 |
| 43 | 6jrp_H_DG3_DA4 | BBB | BB00 | 49 | 0.39 |
| 44 | 6jrp_H_DA4_DA5 | B12 | BB04 | 46 | 0.50 |
| 45 | 6jrp_H_DA5_DT6 | NAN | NANT | 0 | 0.63 |
| 46 | 6jrp_H_DT6_DG7 | NAN | NANT | 0 | 0.38 |
| 47 | 6jrp_H_DG7_DA8 | NAN | NANT | 0 | 0.48 |
| 48 | 6jrp_H_DA8_DA9 | BBB | BB00 | 62 | 0.22 |
| 49 | 6jrp_H_DA9_DA10 | B12 | BB04 | 51 | 0.32 |
| 50 | 6jrp_H_DA10_DA11 | B-A | BA05 | 25 | 0.30 |
| 51 | 6jrp_I_DT1_DT2 | B-A | BA05 | 48 | 0.25 |
| 52 | 6jrp_I_DT2_DT3 | BBB | BB01 | 47 | 0.35 |
| 53 | 6jrp_I_DT3_DT4 | NAN | NANT | 0 | 0.47 |
| 54 | 6jrp_I_DT4_DC5 | ICL | IC01 | 19 | 0.56 |
| 55 | 6jrp_I_DC5_DA6 | BBB | BB00 | 53 | 0.23 |
| 56 | 6jrp_I_DA6_DT7 | BBB | BB00 | 22 | 0.39 |
| 57 | 6jrp_I_DT7_DT8 | BB2 | BB07 | 50 | 0.27 |
| 58 | 6jrp_I_DT8_DC9 | BBB | BB01 | 62 | 0.31 |
| 59 | 6jrp_I_DC9_DA10 | BBB | BB00 | 31 | 0.31 |
| 60 | 6jrp_I_DA10_DT11 | BBB | BB00 | 65 | 0.17 |
| 61 | 6jrp_K_DA1_DT2 | B12 | BB04 | 36 | 0.31 |
| 62 | 6jrp_K_DT2_DG3 | B12 | BB04 | 10 | 0.44 |
| 63 | 6jrp_K_DG3_DA4 | BBB | BB00 | 62 | 0.37 |
| 64 | 6jrp_K_DA4_DA5 | B12 | BB04 | 48 | 0.49 |
| 65 | 6jrp_K_DA5_DT6 | NAN | NANT | 0 | 0.56 |
| 66 | 6jrp_K_DT6_DG7 | NAN | NANT | 0 | 0.37 |
| 67 | 6jrp_K_DG7_DA8 | NAN | NANT | 0 | 0.45 |
| 68 | 6jrp_K_DA8_DA9 | BBB | BB00 | 34 | 0.36 |
| 69 | 6jrp_K_DA9_DA10 | B12 | BB04 | 47 | 0.32 |
| 70 | 6jrp_K_DA10_DA11 | B-A | BA05 | 40 | 0.26 |
| 71 | 6jrp_L_DT1_DT2 | B-A | BA05 | 60 | 0.28 |
| 72 | 6jrp_L_DT2_DT3 | NAN | NANT | 0 | 0.61 |
| 73 | 6jrp_L_DT3_DT4 | NAN | NANT | 0 | 0.56 |
| 74 | 6jrp_L_DT4_DC5 | A-B | AB04 | 29 | 0.49 |
| 75 | 6jrp_L_DC5_DA6 | BBB | BB00 | 55 | 0.20 |
| 76 | 6jrp_L_DA6_DT7 | BBB | BB00 | 27 | 0.39 |
| 77 | 6jrp_L_DT7_DT8 | BB2 | BB07 | 53 | 0.28 |
| 78 | 6jrp_L_DT8_DC9 | B-A | BA05 | 77 | 0.26 |
| 79 | 6jrp_L_DC9_DA10 | BBB | BB00 | 34 | 0.29 |
| 80 | 6jrp_L_DA10_DT11 | BBB | BB00 | 64 | 0.20 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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