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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the human nucleosome phased with 16 selenium atoms

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016jr1_I_DA1_DT2NANNANT00.39 BB03
0026jr1_I_DT2_DC3BBBBB01510.45 BB01
0036jr1_I_DC3_DA4NANNANT00.44 BB00
0046jr1_I_DA4_DA5BBBBB00880.14 BB00
0056jr1_I_DA5_DT6BBBBB00170.24 BB00
0066jr1_I_DT6_DA7BBBBB00370.34 BB00
0076jr1_I_DA7_DT8BBBBB01630.19 BB01
0086jr1_I_DT8_DC9BBBBB00810.17 BB00
0096jr1_I_DC9_DC10BBwBB02550.25 BB02
0106jr1_I_DC10_DA11BBBBB00620.21 BB00
0116jr1_I_DA11_DC12B-ABA05290.25 BA05
0126jr1_I_DC12_DC13AAAAA00200.36 AA00
0136jr1_I_DC13_DT14A-BAB01720.10 AB01
0146jr1_I_DT14_DG15BBBBB00330.46 BB00
0156jr1_I_DG15_DC16B12BB04590.29 BB04
0166jr1_I_DC16_DA17BB2BB07870.29 BB07
0176jr1_I_DA17_DG18BBBBB00710.22 BB00
0186jr1_I_DG18_DA19BBBBB00880.26 BB00
0196jr1_I_DA19_DT20BBBBB01820.16 BB01
0206jr1_I_DT20_DT21BBBBB00720.18 BB00
0216jr1_I_DT21_DC22BBBBB00860.14 BB00
0226jr1_I_DC22_DT23BBBBB00830.22 BB00
0236jr1_I_DT23_DA24BBBBB00610.32 BB00
0246jr1_I_DA24_DC25B12BB04730.16 BB04
0256jr1_I_DC25_DC26BBBBB00870.18 BB00
0266jr1_I_DC26_DA27BB2BB07830.28 BB07
0276jr1_I_DA27_DA28BBBBB00640.24 BB00
0286jr1_I_DA28_DA29B12BB04890.13 BB04
0296jr1_I_DA29_DA30BBBBB00870.14 BB00
0306jr1_I_DA30_DG31BBBBB00890.19 BB00
0316jr1_I_DG31_DT32BBBBB00440.23 BB00
0326jr1_I_DT32_DG33BBBBB00950.10 BB00
0336jr1_I_DG33_DT34BBBBB00370.22 BB00
0346jr1_I_DT34_DA35BBBBB00570.23 BB00
0356jr1_I_DA35_DT36BBBBB01820.12 BB01
0366jr1_I_DT36_DT37BBBBB01610.26 BB01
0376jr1_I_DT37_DT38BBBBB00680.14 BB00
0386jr1_I_DT38_DG39BB2BB07690.19 BB07
0396jr1_I_DG39_DG40B12BB04640.36 BB04
0406jr1_I_DG40_DA41BB2BB07820.14 BB07
0416jr1_I_DA41_DA42BBBBB00130.31 BB00
0426jr1_I_DA42_DA43NANNANT00.25 BB03
0436jr1_I_DA43_DC44BBBBB01210.33 BB01
0446jr1_I_DC44_DT45B-ABA05450.42 BA05
0456jr1_I_DT45_DG46NANNANT00.22 AB03
0466jr1_I_DG46_DC47NANNANT00.49 BB08
0476jr1_I_DC47_DT48NANNANT00.55 BA10
0486jr1_I_DT48_DC49BBwBB02470.29 BB02
0496jr1_I_DC49_DC50miBBB15650.24 BB15
0506jr1_I_DC50_DA51BBBBB00540.18 BB00
0516jr1_I_DA51_DT52BBBBB01650.23 BB01
0526jr1_I_DT52_DC53BBBBB01700.22 BB01
0536jr1_I_DC53_DA54BBBBB00430.29 BB00
0546jr1_I_DA54_DA55BBBBB00650.36 BB00
0556jr1_I_DA55_DA56BBBBB00700.17 BB00
0566jr1_I_DA56_DA57B-ABA08120.31 BA08
0576jr1_I_DA57_DG58NANNANT00.40 AB02
0586jr1_I_DG58_DG59B12BB04510.28 BB04
0596jr1_I_DG59_DC60BBBBB00890.18 BB00
0606jr1_I_DC60_DA61B12BB04860.19 BB04
0616jr1_I_DA61_DT62BBBBB00640.18 BB00
0626jr1_I_DT62_DG63BBBBB00880.17 BB00
0636jr1_I_DG63_DT64BBBBB00920.18 BB00
0646jr1_I_DT64_DT65BBBBB00800.15 BB00
0656jr1_I_DT65_DC66BBBBB00860.19 BB00
0666jr1_I_DC66_DA67BB2BB07800.18 BB07
0676jr1_I_DA67_DG68B12BB04430.50 BB04
0686jr1_I_DG68_DC69BB2BB07760.19 BB07
0696jr1_I_DC69_DT70B12BB04520.23 BB04
0706jr1_I_DT70_DG71BBBBB00800.24 BB00
0716jr1_I_DG71_DA72BBBBB00900.24 BB00
0726jr1_I_DA72_DA73BBBBB00820.13 BB00
0736jr1_I_DA73_DT74BBBBB00560.26 BB00
0746jr1_I_DT74_DT75BBBBB00360.18 BB00
0756jr1_I_DT75_DC76BBBBB00810.18 BB00
0766jr1_I_DC76_DA77BB2BB07710.23 BB07
0776jr1_I_DA77_DG78B12BB04460.40 BB04
0786jr1_I_DG78_DC79BB2BB07450.18 BB07
0796jr1_I_DC79_DT80B12BB04670.36 BB04
0806jr1_I_DT80_DG81B12BB04910.14 BB04
0816jr1_I_DG81_DA82BBBBB00950.17 BB00
0826jr1_I_DA82_DA83BBBBB00840.14 BB00
0836jr1_I_DA83_DC84BBBBB01820.18 BB01
0846jr1_I_DC84_DA85BBBBB00470.44 BB00
0856jr1_I_DA85_DT86BBBBB01800.19 BB01
0866jr1_I_DT86_DG87BBBBB00450.27 BB00
0876jr1_I_DG87_DC88B12BB04710.22 BB04
0886jr1_I_DC88_DC89BB2BB07600.38 BB07
0896jr1_I_DC89_DT90B12BB04760.21 BB04
0906jr1_I_DT90_DT91BBBBB00800.12 BB00
0916jr1_I_DT91_DT92BBBBB00830.15 BB00
0926jr1_I_DT92_DT93BBBBB00650.19 BB00
0936jr1_I_DT93_DG94BBBBB01710.17 BB01
0946jr1_I_DG94_DA95BBBBB00610.33 BB00
0956jr1_I_DA95_DT96BBwBB02390.24 BB02
0966jr1_I_DT96_DG97BBBBB00780.18 BB00
0976jr1_I_DG97_DG98B12BB04260.35 BB04
0986jr1_I_DG98_DA99NANNANT00.43 BB04
0996jr1_I_DA99_DG100BBBBB00340.28 BB00
1006jr1_I_DG100_DC101B12BB04140.20 BB04
1016jr1_I_DC101_DA102BBBBB01110.23 BB01
1026jr1_I_DA102_DG103BBBBB00700.35 BB00
1036jr1_I_DG103_DT104NANNANT00.26 BB02
1046jr1_I_DT104_DT105BBBBB00940.16 BB00
1056jr1_I_DT105_DT106BBBBB00370.16 BB00
1066jr1_I_DT106_DC107BBwBB02410.28 BB02
1076jr1_I_DC107_DC108BB2BB07100.35 BB07
1086jr1_I_DC108_DA109BBBBB00120.61 BB00
1096jr1_I_DA109_DA110BBBBB00620.28 BB00
1106jr1_I_DA110_DA111B-ABA08670.24 BA08
1116jr1_I_DA111_DT112BBBBB01220.30 BB01
1126jr1_I_DT112_DA113BBBBB00820.23 BB00
1136jr1_I_DA113_DC114BBBBB00800.21 BB00
1146jr1_I_DC114_DA115B12BB04870.15 BB04
1156jr1_I_DA115_DC116BBBBB01770.21 BB01
1166jr1_I_DC116_DT117BBBBB00520.33 BB00
1176jr1_I_DT117_DT118BBBBB00890.13 BB00
1186jr1_I_DT118_DT119BBBBB01820.19 BB01
1196jr1_I_DT119_DT120BBBBB00610.21 BB00
1206jr1_I_DT120_DG121B12BB04630.36 BB04
1216jr1_I_DG121_DG122BBBBB00720.32 BB00
1226jr1_I_DG122_DT123BBBBB00510.16 BB00
1236jr1_I_DT123_DA124BBBBB00680.38 BB00
1246jr1_I_DA124_DG125BBBBB00900.26 BB00
1256jr1_I_DG125_DA126BBBBB00760.29 BB00
1266jr1_I_DA126_DA127BBBBB00830.13 BB00
1276jr1_I_DA127_DT128BBBBB01900.18 BB01
1286jr1_I_DT128_DC129BBBBB00740.30 BB00
1296jr1_I_DC129_DT130NANNANT01.61 ZZ02
1306jr1_I_DT130_DG131B12BB04420.37 BB04
1316jr1_I_DG131_DC132BBBBB00840.24 BB00
1326jr1_I_DC132_DA133BBwBB11630.25 BB11
1336jr1_I_DA133_DG134BBBBB00370.66 BB00
1346jr1_I_DG134_DG135B-ABA08440.28 BA08
1356jr1_I_DG135_DT136NANNANT00.47 AB04
1366jr1_I_DT136_DG137BBBBB01500.33 BB01
1376jr1_I_DG137_DG138BBBBB00820.18 BB00
1386jr1_I_DG138_DA139BBBBB00860.28 BB00
1396jr1_I_DA139_DT140miBBB15560.22 BB15
1406jr1_I_DT140_DA141BBBBB00830.17 BB00
1416jr1_I_DA141_DT142BBBBB00860.23 BB00
1426jr1_I_DT142_DT143BBBBB00580.19 BB00
1436jr1_I_DT143_DG144BBBBB00730.23 BB00
1446jr1_I_DG144_DA145BBwBB03510.37 BB03
1456jr1_I_DA145_DT146B-ABA05130.43 BA05
1466jr1_J_DA147_DT148A-BAB01470.24 AB01
1476jr1_J_DT148_DC149BBBBB01660.28 BB01
1486jr1_J_DC149_DA150NANNANT00.35 BB00
1496jr1_J_DA150_DA151BBBBB00880.10 BB00
1506jr1_J_DA151_DT152BBBBB00260.22 BB00
1516jr1_J_DT152_DA153BBBBB01780.21 BB01
1526jr1_J_DA153_DT154BBBBB00620.23 BB00
1536jr1_J_DT154_DC155BBBBB00830.14 BB00
1546jr1_J_DC155_DC156BBBBB00400.18 BB00
1556jr1_J_DC156_DA157BBBBB00820.18 BB00
1566jr1_J_DA157_DC158B-ABA05270.22 BA05
1576jr1_J_DC158_DC159AAAAA00220.37 AA00
1586jr1_J_DC159_DT160A-BAB01720.14 AB01
1596jr1_J_DT160_DG161BBBBB00750.23 BB00
1606jr1_J_DG161_DC162BBBBB00540.21 BB00
1616jr1_J_DC162_DA163BB2BB07890.26 BB07
1626jr1_J_DA163_DG164BBBBB00550.29 BB00
1636jr1_J_DG164_DA165BBBBB00820.37 BB00
1646jr1_J_DA165_DT166BBBBB01710.27 BB01
1656jr1_J_DT166_DT167BBBBB00780.16 BB00
1666jr1_J_DT167_DC168BBBBB00840.16 BB00
1676jr1_J_DC168_DT169BBBBB00900.18 BB00
1686jr1_J_DT169_DA170BBBBB00640.28 BB00
1696jr1_J_DA170_DC171B12BB04790.15 BB04
1706jr1_J_DC171_DC172BBBBB00910.18 BB00
1716jr1_J_DC172_DA173BB2BB07870.24 BB07
1726jr1_J_DA173_DA174BBBBB00640.24 BB00
1736jr1_J_DA174_DA175B12BB04760.17 BB04
1746jr1_J_DA175_DA176BBBBB00810.23 BB00
1756jr1_J_DA176_DG177BBBBB00920.13 BB00
1766jr1_J_DG177_DT178BBBBB00590.21 BB00
1776jr1_J_DT178_DG179BBBBB00960.16 BB00
1786jr1_J_DG179_DT180BBBBB00190.24 BB00
1796jr1_J_DT180_DA181BBBBB01730.19 BB01
1806jr1_J_DA181_DT182BBBBB01760.14 BB01
1816jr1_J_DT182_DT183BBBBB01450.34 BB01
1826jr1_J_DT183_DT184BBBBB00700.13 BB00
1836jr1_J_DT184_DG185BB2BB07770.27 BB07
1846jr1_J_DG185_DG186BBBBB00450.34 BB00
1856jr1_J_DG186_DA187BB2BB07870.15 BB07
1866jr1_J_DA187_DA188BBBBB00140.31 BB00
1876jr1_J_DA188_DA189BBBBB01700.17 BB01
1886jr1_J_DA189_DC190BBBBB01290.23 BB01
1896jr1_J_DC190_DT191NANNANT00.45 AA01
1906jr1_J_DT191_DG192NANNANT00.34 AB03
1916jr1_J_DG192_DC193B12BB05320.27 BB05
1926jr1_J_DC193_DT194BBBBB00470.27 BB00
1936jr1_J_DT194_DC195BBwBB02420.35 BB02
1946jr1_J_DC195_DC196miBBB15600.24 BB15
1956jr1_J_DC196_DA197BBBBB00630.24 BB00
1966jr1_J_DA197_DT198BBBBB01620.29 BB01
1976jr1_J_DT198_DC199BBBBB01700.28 BB01
1986jr1_J_DC199_DA200BBBBB00450.31 BB00
1996jr1_J_DA200_DA201BBBBB00740.27 BB00
2006jr1_J_DA201_DA202BBBBB00710.26 BB00
2016jr1_J_DA202_DA203BB2BB0780.31 BB07
2026jr1_J_DA203_DG204BBBBB00300.33 BB00
2036jr1_J_DG204_DG205B12BB04600.27 BB04
2046jr1_J_DG205_DC206BBBBB00830.17 BB00
2056jr1_J_DC206_DA207B12BB04850.18 BB04
2066jr1_J_DA207_DT208BBBBB00620.18 BB00
2076jr1_J_DT208_DG209BBBBB00870.18 BB00
2086jr1_J_DG209_DT210BBBBB00900.17 BB00
2096jr1_J_DT210_DT211BBBBB00840.17 BB00
2106jr1_J_DT211_DC212BBBBB00880.21 BB00
2116jr1_J_DC212_DA213BB2BB07580.28 BB07
2126jr1_J_DA213_DG214BB2BB07660.20 BB07
2136jr1_J_DG214_DC215B12BB04470.41 BB04
2146jr1_J_DC215_DT216B12BB04310.22 BB04
2156jr1_J_DT216_DG217BBBBB00570.36 BB00
2166jr1_J_DG217_DA218BBBBB00890.15 BB00
2176jr1_J_DA218_DA219BBBBB00830.13 BB00
2186jr1_J_DA219_DT220BBBBB00560.26 BB00
2196jr1_J_DT220_DT221BBBBB00420.18 BB00
2206jr1_J_DT221_DC222BBBBB00790.19 BB00
2216jr1_J_DC222_DA223BB2BB07700.22 BB07
2226jr1_J_DA223_DG224B12BB04800.25 BB04
2236jr1_J_DG224_DC225BB2BB07170.33 BB07
2246jr1_J_DC225_DT226B12BB04920.18 BB04
2256jr1_J_DT226_DG227B12BB04690.33 BB04
2266jr1_J_DG227_DA228BBBBB00800.39 BB00
2276jr1_J_DA228_DA229BBBBB00890.14 BB00
2286jr1_J_DA229_DC230BBBBB01900.15 BB01
2296jr1_J_DC230_DA231BBBBB00560.40 BB00
2306jr1_J_DA231_DT232BBBBB01830.16 BB01
2316jr1_J_DT232_DG233BBBBB00530.24 BB00
2326jr1_J_DG233_DC234B12BB04780.16 BB04
2336jr1_J_DC234_DC235BB2BB07750.24 BB07
2346jr1_J_DC235_DT236B12BB04800.22 BB04
2356jr1_J_DT236_DT237BBBBB00770.22 BB00
2366jr1_J_DT237_DT238BBBBB00860.17 BB00
2376jr1_J_DT238_DT239BBBBB01810.16 BB01
2386jr1_J_DT239_DG240BBBBB01630.17 BB01
2396jr1_J_DG240_DA241BBBBB00710.25 BB00
2406jr1_J_DA241_DT242BBwBB02360.24 BB02
2416jr1_J_DT242_DG243BBBBB00820.16 BB00
2426jr1_J_DG243_DG244BBwBB11640.31 BB11
2436jr1_J_DG244_DA245NANNANT00.60 BA17
2446jr1_J_DA245_DG246NANNANT00.39 AB02
2456jr1_J_DG246_DC247BB2BB07100.32 BB07
2466jr1_J_DC247_DA248BBBBB0180.32 BB01
2476jr1_J_DA248_DG249NANNANT00.25 BB02
2486jr1_J_DG249_DT250NANNANT00.35 BB02
2496jr1_J_DT250_DT251BBBBB00930.16 BB00
2506jr1_J_DT251_DT252BBBBB00340.12 BB00
2516jr1_J_DT252_DC253BBBBB00200.33 BB00
2526jr1_J_DC253_DC254NANNANT00.33 BA08
2536jr1_J_DC254_DA255BBBBB00340.53 BB00
2546jr1_J_DA255_DA256BBBBB00800.21 BB00
2556jr1_J_DA256_DA257BBBBB0090.28 BB00
2566jr1_J_DA257_DT258BBBBB01610.21 BB01
2576jr1_J_DT258_DA259BBBBB00790.25 BB00
2586jr1_J_DA259_DC260BBBBB00770.19 BB00
2596jr1_J_DC260_DA261B12BB04850.20 BB04
2606jr1_J_DA261_DC262BBBBB01850.19 BB01
2616jr1_J_DC262_DT263BBBBB00750.20 BB00
2626jr1_J_DT263_DT264BBBBB00860.19 BB00
2636jr1_J_DT264_DT265BBBBB01800.19 BB01
2646jr1_J_DT265_DT266BBBBB00690.18 BB00
2656jr1_J_DT266_DG267BB2BB07660.26 BB07
2666jr1_J_DG267_DG268BBBBB00750.22 BB00
2676jr1_J_DG268_DT269BBBBB00640.24 BB00
2686jr1_J_DT269_DA270BBBBB00740.40 BB00
2696jr1_J_DA270_DG271BBBBB00800.20 BB00
2706jr1_J_DG271_DA272BBBBB00760.33 BB00
2716jr1_J_DA272_DA273BBBBB00850.12 BB00
2726jr1_J_DA273_DT274BBBBB01910.21 BB01
2736jr1_J_DT274_DC275BBBBB00740.17 BB00
2746jr1_J_DC275_DT276miBBB15760.23 BB15
2756jr1_J_DT276_DG277BB2BB07360.41 BB07
2766jr1_J_DG277_DC278NANNANT00.40 AB02
2776jr1_J_DC278_DA279B12BB04330.42 BB04
2786jr1_J_DA279_DG280BBBBB00590.37 BB00
2796jr1_J_DG280_DG281B-ABA10560.34 BA10
2806jr1_J_DG281_DT282NANNANT00.42 AB04
2816jr1_J_DT282_DG283BBBBB01500.26 BB01
2826jr1_J_DG283_DG284BBBBB00720.21 BB00
2836jr1_J_DG284_DA285BBBBB00810.28 BB00
2846jr1_J_DA285_DT286BBBBB00110.22 BB00
2856jr1_J_DT286_DA287BBBBB00830.24 BB00
2866jr1_J_DA287_DT288BBBBB00910.18 BB00
2876jr1_J_DT288_DT289BBBBB00740.17 BB00
2886jr1_J_DT289_DG290BBBBB00670.19 BB00
2896jr1_J_DG290_DA291BBBBB00670.45 BB00
2906jr1_J_DA291_DT292B-ABA05180.26 BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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