Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the human nucleosome containing H2A.Z.1 S42R

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016jou_I_DA1_DT2NANNANT00.61 BB08
0026jou_I_DT2_DC3NANNANT00.61 BB16
0036jou_I_DC3_DA4B12BB04630.27 BB04
0046jou_I_DA4_DA5miBBB15810.16 BB15
0056jou_I_DA5_DT6BBBBB00170.31 BB00
0066jou_I_DT6_DA7NANNANT00.36 BA08
0076jou_I_DA7_DT8BBBBB00370.19 BB00
0086jou_I_DT8_DC9BBBBB00920.11 BB00
0096jou_I_DC9_DC10miBBB10810.20 BB10
0106jou_I_DC10_DA11B-ABA13520.30 BA13
0116jou_I_DA11_DC12NANNANT00.47 AB04
0126jou_I_DC12_DC13A-BAB01220.35 AB01
0136jou_I_DC13_DT14BBBBB00530.42 BB00
0146jou_I_DT14_DG15NANNANT00.41 BB10
0156jou_I_DG15_DC16NANNANT00.30 BB07
0166jou_I_DC16_DA17BB2BB07760.27 BB07
0176jou_I_DA17_DG18B12BB04540.28 BB04
0186jou_I_DG18_DA19BBBBB00890.26 BB00
0196jou_I_DA19_DT20BBBBB00910.17 BB00
0206jou_I_DT20_DT21BBBBB00850.18 BB00
0216jou_I_DT21_DC22BBBBB00670.17 BB00
0226jou_I_DC22_DT23miBBB15820.17 BB15
0236jou_I_DT23_DA24B12BB04560.30 BB04
0246jou_I_DA24_DC25B12BB04670.29 BB04
0256jou_I_DC25_DC26BBBBB00880.23 BB00
0266jou_I_DC26_DA27BB2BB07740.34 BB07
0276jou_I_DA27_DA28BBBBB00540.31 BB00
0286jou_I_DA28_DA29BB2BB07890.13 BB07
0296jou_I_DA29_DA30BBBBB00910.14 BB00
0306jou_I_DA30_DG31BBBBB00880.28 BB00
0316jou_I_DG31_DT32miBBB15850.16 BB15
0326jou_I_DT32_DG33BBBBB00870.10 BB00
0336jou_I_DG33_DT34BBBBB00320.23 BB00
0346jou_I_DT34_DA35BBBBB00490.32 BB00
0356jou_I_DA35_DT36BBBBB00890.20 BB00
0366jou_I_DT36_DT37BBBBB00520.27 BB00
0376jou_I_DT37_DT38BBBBB00120.17 BB00
0386jou_I_DT38_DG39BB2BB07250.32 BB07
0396jou_I_DG39_DG40BB2BB07190.36 BB07
0406jou_I_DG40_DA41B12BB04330.33 BB04
0416jou_I_DA41_DA42BBBBB00630.24 BB00
0426jou_I_DA42_DA43BBwBB11670.31 BB11
0436jou_I_DA43_DC44NANNANT00.77 AB03
0446jou_I_DC44_DT45BBBBB01120.36 BB01
0456jou_I_DT45_DG46BBwBB11410.45 BB11
0466jou_I_DG46_DC47BB2BB0780.49 BB07
0476jou_I_DC47_DT48A-BAB02390.37 AB02
0486jou_I_DT48_DC49BB2BB07140.35 BB07
0496jou_I_DC49_DC50BBBBB00640.29 BB00
0506jou_I_DC50_DA51BBBBB00570.15 BB00
0516jou_I_DA51_DT52BBBBB00400.20 BB00
0526jou_I_DT52_DC53B-ABA08270.38 BA08
0536jou_I_DC53_DA54AAAAA02440.45 AA02
0546jou_I_DA54_DA55A-BAB01770.21 AB01
0556jou_I_DA55_DA56BBBBB00630.24 BB00
0566jou_I_DA56_DA57BB2BB07540.17 BB07
0576jou_I_DA57_DG58BB2BB07160.30 BB07
0586jou_I_DG58_DG59B12BB04400.27 BB04
0596jou_I_DG59_DC60B12BB04730.15 BB04
0606jou_I_DC60_DA61BBBBB00820.21 BB00
0616jou_I_DA61_DT62BBBBB00260.20 BB00
0626jou_I_DT62_DG63B12BB04410.21 BB04
0636jou_I_DG63_DT64BBwBB02600.27 BB02
0646jou_I_DT64_DT65BBBBB00290.20 BB00
0656jou_I_DT65_DC66BBBBB00880.14 BB00
0666jou_I_DC66_DA67BB2BB07770.25 BB07
0676jou_I_DA67_DG68BBBBB00690.28 BB00
0686jou_I_DG68_DC69BB2BB07760.24 BB07
0696jou_I_DC69_DT70BBBBB00880.20 BB00
0706jou_I_DT70_DG71BBBBB00610.23 BB00
0716jou_I_DG71_DA72B12BB04780.12 BB04
0726jou_I_DA72_DA73BBBBB00290.16 BB00
0736jou_I_DA73_DT74BBBBB01720.18 BB01
0746jou_I_DT74_DT75BBBBB00250.21 BB00
0756jou_I_DT75_DC76BBBBB00810.19 BB00
0766jou_I_DC76_DA77BB2BB07850.28 BB07
0776jou_I_DA77_DG78BBBBB00440.28 BB00
0786jou_I_DG78_DC79BB2BB07800.24 BB07
0796jou_I_DC79_DT80B12BB04460.40 BB04
0806jou_I_DT80_DG81B12BB04560.18 BB04
0816jou_I_DG81_DA82BBBBB00920.17 BB00
0826jou_I_DA82_DA83BBBBB00920.09 BB00
0836jou_I_DA83_DC84BBBBB00730.20 BB00
0846jou_I_DC84_DA85BB2BB07670.28 BB07
0856jou_I_DA85_DT86BBBBB00370.22 BB00
0866jou_I_DT86_DG87BBBBB00580.26 BB00
0876jou_I_DG87_DC88BB2BB07480.21 BB07
0886jou_I_DC88_DC89BB2BB07260.40 BB07
0896jou_I_DC89_DT90BB2BB07770.23 BB07
0906jou_I_DT90_DT91BBBBB00910.11 BB00
0916jou_I_DT91_DT92BBBBB00470.18 BB00
0926jou_I_DT92_DT93B12BB04400.38 BB04
0936jou_I_DT93_DG94BBBBB00130.32 BB00
0946jou_I_DG94_DA95BBBBB00300.35 BB00
0956jou_I_DA95_DT96BBBBB00250.25 BB00
0966jou_I_DT96_DG97NANNANT00.62 BB02
0976jou_I_DG97_DG98BBBBB00220.43 BB00
0986jou_I_DG98_DA99BB2BB07640.29 BB07
0996jou_I_DA99_DG100BBBBB00660.32 BB00
1006jou_I_DG100_DC101BB2BB07750.22 BB07
1016jou_I_DC101_DA102BBwBB02360.31 BB02
1026jou_I_DA102_DG103BBBBB0080.35 BB00
1036jou_I_DG103_DT104BBwBB02500.29 BB02
1046jou_I_DT104_DT105miBBB15760.15 BB15
1056jou_I_DT105_DT106BBBBB00850.18 BB00
1066jou_I_DT106_DC107miBBB10300.29 BB10
1076jou_I_DC107_DC108NANNANT00.48 AB02
1086jou_I_DC108_DA109BB2BB07780.32 BB07
1096jou_I_DA109_DA110BBBBB00720.23 BB00
1106jou_I_DA110_DA111B-ABA08770.26 BA08
1116jou_I_DA111_DT112A-BAB01770.29 AB01
1126jou_I_DT112_DA113BBBBB00730.27 BB00
1136jou_I_DA113_DC114BBBBB00370.19 BB00
1146jou_I_DC114_DA115B12BB04970.11 BB04
1156jou_I_DA115_DC116B-ABA01500.18 BA01
1166jou_I_DC116_DT117A-BAB01300.30 AB01
1176jou_I_DT117_DT118BBwBB02550.25 BB02
1186jou_I_DT118_DT119B-ABA05600.28 BA05
1196jou_I_DT119_DT120BBBBB01360.39 BB01
1206jou_I_DT120_DG121BBBBB00620.31 BB00
1216jou_I_DG121_DG122B12BB04610.24 BB04
1226jou_I_DG122_DT123BBBBB00380.17 BB00
1236jou_I_DT123_DA124BBBBB00440.31 BB00
1246jou_I_DA124_DG125B12BB04890.11 BB04
1256jou_I_DG125_DA126BBBBB00760.29 BB00
1266jou_I_DA126_DA127BBBBB00860.15 BB00
1276jou_I_DA127_DT128BBBBB00880.23 BB00
1286jou_I_DT128_DC129BBBBB00790.22 BB00
1296jou_I_DC129_DT130BB2BB07730.33 BB07
1306jou_I_DT130_DG131BBBBB00550.32 BB00
1316jou_I_DG131_DC132B12BB04510.21 BB04
1326jou_I_DC132_DA133miBBB15650.39 BB15
1336jou_I_DA133_DG134NANNANT00.58 BB11
1346jou_I_DG134_DG135NANNANT00.42 BA08
1356jou_I_DG135_DT136A-BAB01660.28 AB01
1366jou_I_DT136_DG137miBBB10560.29 BB10
1376jou_I_DG137_DG138B12BB04180.29 BB04
1386jou_I_DG138_DA139BBBBB00550.37 BB00
1396jou_I_DA139_DT140BBBBB00770.24 BB00
1406jou_I_DT140_DA141miBBB10790.28 BB10
1416jou_I_DA141_DT142B12BB04670.25 BB04
1426jou_I_DT142_DT143BBBBB00630.22 BB00
1436jou_I_DT143_DG144BBBBB00570.26 BB00
1446jou_I_DG144_DA145BBBBB00760.17 BB00
1456jou_I_DA145_DT146B-ABA10930.23 BA10
1466jou_J_DA147_DT148NANNANT01.38 BB03
1476jou_J_DT148_DC149miBBB15290.63 BB15
1486jou_J_DC149_DA150NANNANT00.48 BB08
1496jou_J_DA150_DA151NANNANT00.29 BB03
1506jou_J_DA151_DT152BBBBB01670.33 BB01
1516jou_J_DT152_DA153B-ABA08590.26 BA08
1526jou_J_DA153_DT154BBBBB01690.21 BB01
1536jou_J_DT154_DC155BBBBB00510.20 BB00
1546jou_J_DC155_DC156BBBBB00480.15 BB00
1556jou_J_DC156_DA157BBwBB11690.32 BB11
1566jou_J_DA157_DC158B-ABA05190.26 BA05
1576jou_J_DC158_DC159NANNANT00.42 AA00
1586jou_J_DC159_DT160A-BAB01900.14 AB01
1596jou_J_DT160_DG161miBBB15580.37 BB15
1606jou_J_DG161_DC162BBBBB00420.22 BB00
1616jou_J_DC162_DA163BB2BB07780.27 BB07
1626jou_J_DA163_DG164BBBBB00670.26 BB00
1636jou_J_DG164_DA165BB2BB07760.08 BB07
1646jou_J_DA165_DT166B-ABA08670.38 BA08
1656jou_J_DT166_DT167BBBBB01220.23 BB01
1666jou_J_DT167_DC168BBBBB00930.15 BB00
1676jou_J_DC168_DT169BBBBB00650.22 BB00
1686jou_J_DT169_DA170BBBBB00750.25 BB00
1696jou_J_DA170_DC171B12BB04870.17 BB04
1706jou_J_DC171_DC172BBBBB00680.36 BB00
1716jou_J_DC172_DA173NANNANT00.47 BB08
1726jou_J_DA173_DA174BBBBB00840.23 BB00
1736jou_J_DA174_DA175BBBBB00880.18 BB00
1746jou_J_DA175_DA176BB2BB07690.18 BB07
1756jou_J_DA176_DG177BBBBB00810.14 BB00
1766jou_J_DG177_DT178BBBBB00650.19 BB00
1776jou_J_DT178_DG179BBBBB00590.17 BB00
1786jou_J_DG179_DT180BBBBB01350.27 BB01
1796jou_J_DT180_DA181BBBBB01490.23 BB01
1806jou_J_DA181_DT182B-ABA05840.18 BA05
1816jou_J_DT182_DT183A-BAB03640.36 AB03
1826jou_J_DT183_DT184BBBBB00900.16 BB00
1836jou_J_DT184_DG185BB2BB07770.30 BB07
1846jou_J_DG185_DG186BBBBB00520.26 BB00
1856jou_J_DG186_DA187BB2BB07880.08 BB07
1866jou_J_DA187_DA188miBBB10560.17 BB10
1876jou_J_DA188_DA189BBwBB02160.41 BB02
1886jou_J_DA189_DC190B-ABA05630.33 BA05
1896jou_J_DC190_DT191BBBBB00610.22 BB00
1906jou_J_DT191_DG192B12BB04590.27 BB04
1916jou_J_DG192_DC193NANNANT00.48 BB15
1926jou_J_DC193_DT194NANNANT00.40 BB07
1936jou_J_DT194_DC195B12BB04430.56 BB04
1946jou_J_DC195_DC196BB2BB07160.34 BB07
1956jou_J_DC196_DA197BBBBB00550.31 BB00
1966jou_J_DA197_DT198B-ABA05850.20 BA05
1976jou_J_DT198_DC199BBBBB01570.24 BB01
1986jou_J_DC199_DA200BBBBB01620.23 BB01
1996jou_J_DA200_DA201BBBBB00360.27 BB00
2006jou_J_DA201_DA202miBBB10380.27 BB10
2016jou_J_DA202_DA203B12BB04500.22 BB04
2026jou_J_DA203_DG204BB2BB07340.33 BB07
2036jou_J_DG204_DG205BB2BB07810.25 BB07
2046jou_J_DG205_DC206BBBBB00670.26 BB00
2056jou_J_DC206_DA207B12BB04850.16 BB04
2066jou_J_DA207_DT208BBBBB01930.12 BB01
2076jou_J_DT208_DG209BBBBB00740.23 BB00
2086jou_J_DG209_DT210B-ABA01140.13 BA01
2096jou_J_DT210_DT211A-BAB03830.33 AB03
2106jou_J_DT211_DC212BBBBB00660.18 BB00
2116jou_J_DC212_DA213B12BB04840.22 BB04
2126jou_J_DA213_DG214BB2BB07820.26 BB07
2136jou_J_DG214_DC215BBBBB00690.27 BB00
2146jou_J_DC215_DT216B-ABA17890.18 BA17
2156jou_J_DT216_DG217BBBBB00170.37 BB00
2166jou_J_DG217_DA218BBBBB00870.15 BB00
2176jou_J_DA218_DA219BBBBB01810.15 BB01
2186jou_J_DA219_DT220BBBBB01680.19 BB01
2196jou_J_DT220_DT221BBBBB00630.20 BB00
2206jou_J_DT221_DC222BBBBB00750.26 BB00
2216jou_J_DC222_DA223BB2BB07700.25 BB07
2226jou_J_DA223_DG224BB2BB07580.19 BB07
2236jou_J_DG224_DC225BBBBB00530.23 BB00
2246jou_J_DC225_DT226NANNANT00.50 BB10
2256jou_J_DT226_DG227BB2BB07420.33 BB07
2266jou_J_DG227_DA228B12BB04530.28 BB04
2276jou_J_DA228_DA229BBBBB00720.17 BB00
2286jou_J_DA229_DC230BBBBB00780.19 BB00
2296jou_J_DC230_DA231NANNANT00.47 BB15
2306jou_J_DA231_DT232BBBBB00470.23 BB00
2316jou_J_DT232_DG233B12BB04760.21 BB04
2326jou_J_DG233_DC234B12BB04870.19 BB04
2336jou_J_DC234_DC235B12BB04810.26 BB04
2346jou_J_DC235_DT236BB2BB07440.22 BB07
2356jou_J_DT236_DT237BBBBB01680.29 BB01
2366jou_J_DT237_DT238BBBBB01860.17 BB01
2376jou_J_DT238_DT239BBBBB00760.22 BB00
2386jou_J_DT239_DG240miBBB10920.17 BB10
2396jou_J_DG240_DA241BBBBB00560.29 BB00
2406jou_J_DA241_DT242miBBB10760.27 BB10
2416jou_J_DT242_DG243BBBBB00570.33 BB00
2426jou_J_DG243_DG244BBBBB00680.24 BB00
2436jou_J_DG244_DA245BB2BB07540.22 BB07
2446jou_J_DA245_DG246miBBB10380.35 BB10
2456jou_J_DG246_DC247B12BB04700.27 BB04
2466jou_J_DC247_DA248NANNANT00.46 BB10
2476jou_J_DA248_DG249miBBB10910.17 BB10
2486jou_J_DG249_DT250NANNANT00.58 BB00
2496jou_J_DT250_DT251BBBBB00890.16 BB00
2506jou_J_DT251_DT252BBwBB02450.28 BB02
2516jou_J_DT252_DC253BBBBB00180.31 BB00
2526jou_J_DC253_DC254B12BB04620.25 BB04
2536jou_J_DC254_DA255BB2BB07550.42 BB07
2546jou_J_DA255_DA256B-ABA08650.37 BA08
2556jou_J_DA256_DA257A-BAB03700.29 AB03
2566jou_J_DA257_DT258BBBBB00180.26 BB00
2576jou_J_DT258_DA259BBBBB00390.30 BB00
2586jou_J_DA259_DC260BBBBB00680.23 BB00
2596jou_J_DC260_DA261BBBBB00710.41 BB00
2606jou_J_DA261_DC262BBBBB01840.21 BB01
2616jou_J_DC262_DT263BBBBB01850.16 BB01
2626jou_J_DT263_DT264BBBBB00660.26 BB00
2636jou_J_DT264_DT265BBBBB01740.21 BB01
2646jou_J_DT265_DT266BBBBB00510.23 BB00
2656jou_J_DT266_DG267BB2BB07780.31 BB07
2666jou_J_DG267_DG268BBBBB00760.18 BB00
2676jou_J_DG268_DT269BBBBB00250.32 BB00
2686jou_J_DT269_DA270BBBBB00470.43 BB00
2696jou_J_DA270_DG271BBBBB00720.24 BB00
2706jou_J_DG271_DA272BBBBB00860.26 BB00
2716jou_J_DA272_DA273BBBBB00840.17 BB00
2726jou_J_DA273_DT274BBBBB01670.20 BB01
2736jou_J_DT274_DC275BBBBB00530.22 BB00
2746jou_J_DC275_DT276BBBBB00940.15 BB00
2756jou_J_DT276_DG277NANNANT00.59 BB08
2766jou_J_DG277_DC278NANNANT00.56 BB15
2776jou_J_DC278_DA279BB2BB07690.17 BB07
2786jou_J_DA279_DG280NANNANT00.74 BB02
2796jou_J_DG280_DG281NANNANT00.66 BA09
2806jou_J_DG281_DT282AAAAA00150.56 AA00
2816jou_J_DT282_DG283B-ABA05260.37 BA05
2826jou_J_DG283_DG284A-BAB03740.15 AB03
2836jou_J_DG284_DA285B12BB04130.29 BB04
2846jou_J_DA285_DT286BBwBB02230.35 BB02
2856jou_J_DT286_DA287BBBBB00800.28 BB00
2866jou_J_DA287_DT288BBBBB00720.26 BB00
2876jou_J_DT288_DT289BBBBB00120.22 BB00
2886jou_J_DT289_DG290BBBBB00790.24 BB00
2896jou_J_DG290_DA291B12BB04690.22 BB04
2906jou_J_DA291_DT292B-ABA10760.30 BA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N