Conformers:
ABBIImiBZICOPNSYNN
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Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF sigma factor sigH/E
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6jcy_G_DT3_DT4 | NAN | NANT | 0 | 1.34 |
| 02 | 6jcy_G_DT6_DG7 | NAN | NANT | 0 | 0.79 |
| 03 | 6jcy_G_DG7_DG8 | NAN | NANT | 0 | 1.48 |
| 04 | 6jcy_G_DG8_DG9 | NAN | NANT | 0 | 0.85 |
| 05 | 6jcy_G_DG9_DA10 | NAN | NANT | 0 | 0.45 |
| 06 | 6jcy_G_DA10_DG11 | NAN | NANT | 0 | 0.61 |
| 07 | 6jcy_G_DG11_DC12 | NAN | NANT | 0 | 0.84 |
| 08 | 6jcy_G_DC12_DT13 | NAN | NANT | 0 | 1.03 |
| 09 | 6jcy_G_DT13_DG14 | NAN | NANT | 0 | 1.78 |
| 10 | 6jcy_G_DG14_DT15 | NAN | NANT | 0 | 1.10 |
| 11 | 6jcy_G_DT15_DC16 | BBB | BB00 | 84 | 0.15 |
| 12 | 6jcy_G_DC16_DA17 | BBB | BB00 | 77 | 0.25 |
| 13 | 6jcy_G_DA17_DC18 | BBB | BB01 | 66 | 0.14 |
| 14 | 6jcy_G_DC18_DG19 | BBB | BB00 | 42 | 0.30 |
| 15 | 6jcy_G_DG19_DG20 | B12 | BB04 | 81 | 0.27 |
| 16 | 6jcy_G_DG20_DA21 | B12 | BB04 | 41 | 0.40 |
| 17 | 6jcy_G_DA21_DT22 | BBw | BB02 | 61 | 0.27 |
| 18 | 6jcy_G_DT22_DG23 | miB | BB15 | 53 | 0.34 |
| 19 | 6jcy_G_DG23_DC24 | B12 | BB04 | 39 | 0.24 |
| 20 | 6jcy_G_DC24_DA25 | B12 | BB04 | 16 | 0.42 |
| 21 | 6jcy_H_DT3_DG4 | NAN | NANT | 0 | 0.45 |
| 22 | 6jcy_H_DG4_DC5 | miB | BB12 | 30 | 0.40 |
| 23 | 6jcy_H_DC5_DA6 | BBB | BB00 | 23 | 0.56 |
| 24 | 6jcy_H_DA6_DT7 | BBB | BB00 | 80 | 0.26 |
| 25 | 6jcy_H_DT7_DC8 | B12 | BB04 | 75 | 0.33 |
| 26 | 6jcy_H_DC8_DC9 | miB | BB10 | 51 | 0.23 |
| 27 | 6jcy_H_DC9_DG10 | miB | BB10 | 82 | 0.23 |
| 28 | 6jcy_H_DG10_DT11 | B-A | BA13 | 12 | 0.36 |
| 29 | 6jcy_H_DT11_DG12 | AAA | AA08 | 37 | 0.29 |
| 30 | 6jcy_H_DG12_DA13 | AAA | AA00 | 90 | 0.15 |
| 31 | 6jcy_H_DA13_DG14 | NAN | NANT | 0 | 0.85 |
| 32 | 6jcy_H_DG14_DT15 | AAA | AA00 | 72 | 0.28 |
| 33 | 6jcy_H_DT15_DC16 | AAA | AA00 | 83 | 0.19 |
| 34 | 6jcy_H_DC16_DG17 | AAw | AA10 | 76 | 0.19 |
| 35 | 6jcy_H_DG17_DA18 | AAA | AA08 | 21 | 0.36 |
| 36 | 6jcy_H_DA18_DG19 | AAA | AA08 | 82 | 0.18 |
| 37 | 6jcy_H_DG19_DG20 | AAA | AA00 | 78 | 0.26 |
| 38 | 6jcy_H_DG20_DG21 | AAw | AA01 | 79 | 0.20 |
| 39 | 6jcy_H_DG21_DT22 | AAA | AA00 | 65 | 0.26 |
| 40 | 6jcy_I_C2_C3 | AAA | AA08 | 86 | 0.15 |
| 41 | 6jcy_I_C3_U4 | AAA | AA00 | 83 | 0.21 |
| 42 | 6jcy_I_U4_C5 | AAA | AA00 | 74 | 0.24 |
| 43 | 6jcy_I_C5_G6 | AAA | AA00 | 66 | 0.25 |
| 44 | 6jcy_I_G6_A7 | AAA | AA00 | 88 | 0.16 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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