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Conformers: ABBIImiBZICOPNSYNN
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Structure of 9N-I DNA polymerase incorporation with 3'-AL in the active site

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016ish_C_DC-11_DG-10BB2BB07610.31 BB07
026ish_C_DG-10_DG-9NANNANT00.56 BA05
036ish_C_DG-9_DA-8A-BAB01190.25 AB01
046ish_C_DA-8_DC-7BBBBB01310.26 BB01
056ish_C_DC-7_DT-6A-BAB03370.34 AB03
066ish_C_DT-6_DG-5BBBBB00720.32 BB00
076ish_C_DG-5_DC-4BBBBB00760.26 BB00
086ish_C_DC-4_DT-3BBBBB01510.19 BB01
096ish_C_DT-3_DT-2BBBBB01490.25 BB01
106ish_C_DT-2_DA-1BBBBB01240.29 BB01
116ish_C_DA-1_DC0B-ABA01210.21 BA01
126ish_C_DC0_DC1A-BAB01170.36 AB01
136ish_D_DC2_DT3NANNANT00.54 AA12
146ish_D_DT3_DG4A-BAB05890.21 AB05
156ish_D_DG4_DG5BBBBB00730.22 BB00
166ish_D_DG5_DT6B-ABA0590.28 BA05
176ish_D_DT6_DA7A-BAB01400.30 AB01
186ish_D_DA7_DA8B-ABA05690.22 BA05
196ish_D_DA8_DG9A-BAB03630.33 AB03
206ish_D_DG9_DC10BBBBB00690.26 BB00
216ish_D_DC10_DA11BBBBB00830.22 BB00
226ish_D_DA11_DG12B-ABA13390.42 BA13
236ish_D_DG12_DT13AAAAA04410.30 AA04
246ish_D_DT13_DC14NANNANT00.46 AA04
256ish_D_DC14_DC15NANNANT00.62 AB02
266ish_D_DC15_DG16B-ABA17740.32 BA17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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