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Conformers: ABBIImiBZICOPNSYNN
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Human nucleosome core particle containing 145 bp of DNA

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016ipu_I_DA-72_DT-71NANNANT00.75 AB02
0026ipu_I_DT-71_DC-70BBBBB00310.41 BB00
0036ipu_I_DC-70_DA-69miBBB10540.34 BB10
0046ipu_I_DA-69_DA-68B12BB04740.15 BB04
0056ipu_I_DA-68_DT-67BBBBB00170.29 BB00
0066ipu_I_DT-67_DA-66BB2BB07680.27 BB07
0076ipu_I_DA-66_DT-65BBBBB01830.13 BB01
0086ipu_I_DT-65_DC-64BBBBB01690.23 BB01
0096ipu_I_DC-64_DC-63miBBB15520.30 BB15
0106ipu_I_DC-63_DA-62miBBB10440.30 BB10
0116ipu_I_DA-62_DC-61NANNANT00.39 BB02
0126ipu_I_DC-61_DC-60NANNANT00.52 BB15
0136ipu_I_DC-60_DT-59NANNANT00.66 AB02
0146ipu_I_DT-59_DG-58A-BAB03540.41 AB03
0156ipu_I_DG-58_DC-57miBBB12250.57 BB12
0166ipu_I_DC-57_DA-56BBwBB16390.61 BB16
0176ipu_I_DA-56_DG-55BBBBB00500.34 BB00
0186ipu_I_DG-55_DA-54NANNANT00.32 BA08
0196ipu_I_DA-54_DT-53A-BAB03680.32 AB03
0206ipu_I_DT-53_DA-52BBBBB00610.34 BB00
0216ipu_I_DA-52_DC-51NANNANT00.72 BB02
0226ipu_I_DC-51_DT-50NANNANT00.84 BA10
0236ipu_I_DT-50_DA-49NANNANT00.76 BB16
0246ipu_I_DA-49_DC-48NANNANT00.63 BB10
0256ipu_I_DC-48_DC-47NANNANT00.61 BB07
0266ipu_I_DC-47_DA-46BB2BB07130.38 BB07
0276ipu_I_DA-46_DA-45B12BB04270.34 BB04
0286ipu_I_DA-45_DA-44BBwBB02660.33 BB02
0296ipu_I_DA-44_DA-43BBBBB00210.29 BB00
0306ipu_I_DA-43_DG-42miBBB15530.32 BB15
0316ipu_I_DG-42_DT-41BB2BB07180.51 BB07
0326ipu_I_DT-41_DG-40NANNANT00.55 BB12
0336ipu_I_DG-40_DT-39NANNANT00.71 BB02
0346ipu_I_DT-39_DA-38BBBBB00590.25 BB00
0356ipu_I_DA-38_DT-37NANNANT00.46 BB17
0366ipu_I_DT-37_DT-36miBBB15250.42 BB15
0376ipu_I_DT-36_DT-35BBBBB00170.37 BB00
0386ipu_I_DT-35_DG-34BB2BB07480.33 BB07
0396ipu_I_DG-34_DG-33BBBBB00720.31 BB00
0406ipu_I_DG-33_DA-32NANNANT00.36 BB07
0416ipu_I_DA-32_DA-31BBBBB00470.29 BB00
0426ipu_I_DA-31_DA-30B12BB04440.31 BB04
0436ipu_I_DA-30_DC-29BBBBB00730.26 BB00
0446ipu_I_DC-29_DT-28NANNANT00.49 BB15
0456ipu_I_DT-28_DG-27NANNANT00.71 BB07
0466ipu_I_DG-27_DC-26NANNANT00.52 BB07
0476ipu_I_DC-26_DT-25NANNANT00.53 BB08
0486ipu_I_DT-25_DC-24BBBBB00350.57 BB00
0496ipu_I_DC-24_DC-23BB2BB07450.28 BB07
0506ipu_I_DC-23_DA-22BBBBB00690.34 BB00
0516ipu_I_DA-22_DT-21miBBB15450.24 BB15
0526ipu_I_DT-21_DC-20NANNANT00.32 BB10
0536ipu_I_DC-20_DA-19BB2BB07280.29 BB07
0546ipu_I_DA-19_DA-18NANNANT00.49 BB11
0556ipu_I_DA-18_DA-17miBBB10600.36 BB10
0566ipu_I_DA-17_DA-16BBwBB17770.27 BB17
0576ipu_I_DA-16_DG-15NANNANT01.12 OP24
0586ipu_I_DG-15_DG-14NANNANT00.64 BB08
0596ipu_I_DG-14_DC-13NANNANT00.40 BB00
0606ipu_I_DC-13_DA-12B12BB04610.31 BB04
0616ipu_I_DA-12_DT-11B-ABA01380.26 BA01
0626ipu_I_DT-11_DG-10A-BAB03490.51 AB03
0636ipu_I_DG-10_DT-9BBBBB00540.32 BB00
0646ipu_I_DT-9_DT-8BBBBB00840.18 BB00
0656ipu_I_DT-8_DC-7BBBBB00710.23 BB00
0666ipu_I_DC-7_DA-6BB2BB07590.30 BB07
0676ipu_I_DA-6_DG-5BBBBB00610.29 BB00
0686ipu_I_DG-5_DC-4BB2BB07230.32 BB07
0696ipu_I_DC-4_DT-3BBBBB01660.24 BB01
0706ipu_I_DT-3_DG-2BBBBB00680.26 BB00
0716ipu_I_DG-2_DA-1B12BB04360.12 BB04
0726ipu_I_DA-1_DA0BBBBB00190.28 BB00
0736ipu_I_DA0_DT1BBwBB02240.28 BB02
0746ipu_I_DT1_DC2BBBBB00490.20 BB00
0756ipu_I_DC2_DA3miBBB15260.40 BB15
0766ipu_I_DA3_DG4BBBBB00330.51 BB00
0776ipu_I_DG4_DC5BBBBB00560.16 BB00
0786ipu_I_DC5_DT6BB2BB07560.27 BB07
0796ipu_I_DT6_DG7BBBBB00550.37 BB00
0806ipu_I_DG7_DA8B12BB04660.24 BB04
0816ipu_I_DA8_DA9BBBBB00600.17 BB00
0826ipu_I_DA9_DC10BBBBB00700.23 BB00
0836ipu_I_DC10_DA11B12BB04680.18 BB04
0846ipu_I_DA11_DT12BBBBB00750.15 BB00
0856ipu_I_DT12_DG13BBBBB00840.23 BB00
0866ipu_I_DG13_DC14BBBBB00880.12 BB00
0876ipu_I_DC14_DC15BB2BB07190.43 BB07
0886ipu_I_DC15_DT16BBwBB02350.32 BB02
0896ipu_I_DT16_DT17miBBB15220.48 BB15
0906ipu_I_DT17_DT18BBBBB00760.23 BB00
0916ipu_I_DT18_DT19BBBBB00790.19 BB00
0926ipu_I_DT19_DG20NANNANT00.43 BA08
0936ipu_I_DG20_DA21NANNANT00.73 AB02
0946ipu_I_DA21_DT22A-BAB04670.28 AB04
0956ipu_I_DT22_DG23NANNANT00.34 BB10
0966ipu_I_DG23_DG24BBBBB00350.27 BB00
0976ipu_I_DG24_DA25BBBBB00880.13 BB00
0986ipu_I_DA25_DG26BB2BB07550.16 BB07
0996ipu_I_DG26_DC27BBBBB00680.17 BB00
1006ipu_I_DC27_DA28NANNANT00.54 BB08
1016ipu_I_DA28_DG29BBBBB00230.34 BB00
1026ipu_I_DG29_DT30BBwBB02230.31 BB02
1036ipu_I_DT30_DT31miBBB15130.33 BB15
1046ipu_I_DT31_DT32miBBB15250.40 BB15
1056ipu_I_DT32_DC33NANNANT00.54 BB03
1066ipu_I_DC33_DC34NANNANT00.77 BA10
1076ipu_I_DC34_DA35NANNANT00.69 BB07
1086ipu_I_DA35_DA36NANNANT00.60 BA16
1096ipu_I_DA36_DA37BBwBB16340.68 BB16
1106ipu_I_DA37_DT38NANNANT00.49 BB08
1116ipu_I_DT38_DA39BBBBB00450.28 BB00
1126ipu_I_DA39_DC40BBBBB01930.14 BB01
1136ipu_I_DC40_DA41BBBBB00720.30 BB00
1146ipu_I_DA41_DC42B-ABA05810.24 BA05
1156ipu_I_DC42_DT43A-BAB03740.35 AB03
1166ipu_I_DT43_DT44BBBBB00870.25 BB00
1176ipu_I_DT44_DT45BBwBB02300.33 BB02
1186ipu_I_DT45_DT46B-ABA08530.56 BA08
1196ipu_I_DT46_DG47NANNANT00.57 BB04
1206ipu_I_DG47_DG48BBBBB00800.17 BB00
1216ipu_I_DG48_DT49B-ABA08590.26 BA08
1226ipu_I_DT49_DA50miBBB10230.23 BB10
1236ipu_I_DA50_DG51NANNANT00.54 BA16
1246ipu_I_DG51_DT52NANNANT00.66 BA10
1256ipu_I_DT52_DA53BBBBB00230.33 BB00
1266ipu_I_DA53_DT54B12BB05620.40 BB05
1276ipu_I_DT54_DC55miBBB15240.44 BB15
1286ipu_I_DC55_DT56NANNANT00.49 BB02
1296ipu_I_DT56_DG57NANNANT00.47 BB07
1306ipu_I_DG57_DC58BBBBB00710.24 BB00
1316ipu_I_DC58_DA59BB2BB07440.29 BB07
1326ipu_I_DA59_DG60NANNANT00.51 BB12
1336ipu_I_DG60_DG61B-ABA08370.51 BA08
1346ipu_I_DG61_DT62NANNANT00.53 AA02
1356ipu_I_DT62_DG63BBBBB00280.34 BB00
1366ipu_I_DG63_DG64BBBBB00740.27 BB00
1376ipu_I_DG64_DA65B12BB04900.09 BB04
1386ipu_I_DA65_DT66BBBBB00570.20 BB00
1396ipu_I_DT66_DA67miBBB15410.41 BB15
1406ipu_I_DA67_DT68BBBBB00450.30 BB00
1416ipu_I_DT68_DT69BBBBB00480.21 BB00
1426ipu_I_DT69_DG70BBBBB00670.21 BB00
1436ipu_I_DG70_DA71B-ABA08190.33 BA08
1446ipu_I_DA71_DT72NANNANT00.48 BB10
1456ipu_J_DA-72_DT-71NANNANT00.41 AB04
1466ipu_J_DT-71_DC-70NANNANT00.46 AB02
1476ipu_J_DC-70_DA-69B12BB04550.19 BB04
1486ipu_J_DA-69_DA-68BB2BB07680.23 BB07
1496ipu_J_DA-68_DT-67BBBBB00430.20 BB00
1506ipu_J_DT-67_DA-66BBBBB00610.36 BB00
1516ipu_J_DA-66_DT-65BBBBB00330.24 BB00
1526ipu_J_DT-65_DC-64BBwBB02340.28 BB02
1536ipu_J_DC-64_DC-63BBBBB00840.19 BB00
1546ipu_J_DC-63_DA-62BBBBB00270.31 BB00
1556ipu_J_DA-62_DC-61BBBBB01780.19 BB01
1566ipu_J_DC-61_DC-60BBwBB02130.39 BB02
1576ipu_J_DC-60_DT-59NANNANT00.33 BB15
1586ipu_J_DT-59_DG-58BB2BB07490.37 BB07
1596ipu_J_DG-58_DC-57NANNANT00.39 BB14
1606ipu_J_DC-57_DA-56BB2BB07640.38 BB07
1616ipu_J_DA-56_DG-55BBBBB00490.31 BB00
1626ipu_J_DG-55_DA-54B-ABA16320.35 BA16
1636ipu_J_DA-54_DT-53NANNANT00.55 BB16
1646ipu_J_DT-53_DA-52BBBBB00870.20 BB00
1656ipu_J_DA-52_DC-51BBBBB00930.19 BB00
1666ipu_J_DC-51_DT-50BBBBB00790.15 BB00
1676ipu_J_DT-50_DA-49B12BB04290.28 BB04
1686ipu_J_DA-49_DC-48NANNANT00.32 BB07
1696ipu_J_DC-48_DC-47NANNANT00.37 BB07
1706ipu_J_DC-47_DA-46BB2BB07740.32 BB07
1716ipu_J_DA-46_DA-45BBBBB00350.22 BB00
1726ipu_J_DA-45_DA-44NANNANT00.93 OP24
1736ipu_J_DA-44_DA-43A-BAB03840.22 AB03
1746ipu_J_DA-43_DG-42B12BB04720.24 BB04
1756ipu_J_DG-42_DT-41miBBB15730.17 BB15
1766ipu_J_DT-41_DG-40BBBBB00610.20 BB00
1776ipu_J_DG-40_DT-39miBBB13800.28 BB13
1786ipu_J_DT-39_DA-38BBBBB00260.45 BB00
1796ipu_J_DA-38_DT-37BBwBB03540.43 BB03
1806ipu_J_DT-37_DT-36miBBB15570.27 BB15
1816ipu_J_DT-36_DT-35BBBBB00790.21 BB00
1826ipu_J_DT-35_DG-34BB2BB07230.42 BB07
1836ipu_J_DG-34_DG-33NANNANT00.65 BB13
1846ipu_J_DG-33_DA-32NANNANT00.57 BB16
1856ipu_J_DA-32_DA-31B-ABA05390.35 BA05
1866ipu_J_DA-31_DA-30NANNANT00.33 BB10
1876ipu_J_DA-30_DC-29B12BB05540.22 BB05
1886ipu_J_DC-29_DT-28NANNANT00.34 BB13
1896ipu_J_DT-28_DG-27NANNANT00.91 BB08
1906ipu_J_DG-27_DC-26BB2BB07120.39 BB07
1916ipu_J_DC-26_DT-25BBBBB0090.33 BB00
1926ipu_J_DT-25_DC-24BB2BB07120.33 BB07
1936ipu_J_DC-24_DC-23BBBBB01820.16 BB01
1946ipu_J_DC-23_DA-22B-ABA01380.33 BA01
1956ipu_J_DA-22_DT-21NANNANT00.41 AB02
1966ipu_J_DT-21_DC-20A-BAB03400.26 AB03
1976ipu_J_DC-20_DA-19miBBB10340.36 BB10
1986ipu_J_DA-19_DA-18BBBBB00380.17 BB00
1996ipu_J_DA-18_DA-17BBBBB00670.17 BB00
2006ipu_J_DA-17_DA-16BB2BB07310.26 BB07
2016ipu_J_DA-16_DG-15NANNANT00.54 AB02
2026ipu_J_DG-15_DG-14A-BAB03400.35 AB03
2036ipu_J_DG-14_DC-13B12BB04320.19 BB04
2046ipu_J_DC-13_DA-12BBBBB00710.20 BB00
2056ipu_J_DA-12_DT-11BBBBB01580.21 BB01
2066ipu_J_DT-11_DG-10BBBBB00280.27 BB00
2076ipu_J_DG-10_DT-9BBBBB00820.16 BB00
2086ipu_J_DT-9_DT-8BBBBB01840.17 BB01
2096ipu_J_DT-8_DC-7BBBBB00440.24 BB00
2106ipu_J_DC-7_DA-6BB2BB07810.27 BB07
2116ipu_J_DA-6_DG-5BBBBB00700.25 BB00
2126ipu_J_DG-5_DC-4NANNANT00.46 BB07
2136ipu_J_DC-4_DT-3BBBBB00560.37 BB00
2146ipu_J_DT-3_DG-2BBBBB00810.26 BB00
2156ipu_J_DG-2_DA-1B12BB04580.14 BB04
2166ipu_J_DA-1_DT0BBBBB01170.23 BB01
2176ipu_J_DT0_DT1BBBBB01530.27 BB01
2186ipu_J_DT1_DC2BBBBB00540.18 BB00
2196ipu_J_DC2_DA3B12BB04210.28 BB04
2206ipu_J_DA3_DG4miBBB10440.28 BB10
2216ipu_J_DG4_DC5NANNANT00.57 BB07
2226ipu_J_DC5_DT6NANNANT00.47 AB02
2236ipu_J_DT6_DG7NANNANT00.64 BB08
2246ipu_J_DG7_DA8BBBBB00170.38 BB00
2256ipu_J_DA8_DA9B-ABA05610.35 BA05
2266ipu_J_DA9_DC10BBBBB00310.23 BB00
2276ipu_J_DC10_DA11B12BB04650.46 BB04
2286ipu_J_DA11_DT12NANNANT00.80 AB02
2296ipu_J_DT12_DG13NANNANT00.40 BB04
2306ipu_J_DG13_DC14NANNANT00.57 BB07
2316ipu_J_DC14_DC15NANNANT00.50 BA17
2326ipu_J_DC15_DT16B-ABA05300.60 BA05
2336ipu_J_DT16_DT17B-ABA05680.37 BA05
2346ipu_J_DT17_DT18BBBBB01670.21 BB01
2356ipu_J_DT18_DT19BBBBB00730.14 BB00
2366ipu_J_DT19_DG20BBBBB01550.32 BB01
2376ipu_J_DG20_DA21NANNANT00.78 BB16
2386ipu_J_DA21_DT22NANNANT00.77 BB08
2396ipu_J_DT22_DG23NANNANT00.42 BB00
2406ipu_J_DG23_DG24BBBBB0190.41 BB01
2416ipu_J_DG24_DA25BB2BB07530.31 BB07
2426ipu_J_DA25_DG26BBBBB00490.34 BB00
2436ipu_J_DG26_DC27BB2BB07810.20 BB07
2446ipu_J_DC27_DA28BBBBB00520.35 BB00
2456ipu_J_DA28_DG29BB2BB07490.28 BB07
2466ipu_J_DG29_DT30NANNANT00.55 BB15
2476ipu_J_DT30_DT31NANNANT00.50 AB02
2486ipu_J_DT31_DT32NANNANT00.44 BA17
2496ipu_J_DT32_DC33BBBBB00180.40 BB00
2506ipu_J_DC33_DC34BB2BB07650.21 BB07
2516ipu_J_DC34_DA35BB2BB07740.28 BB07
2526ipu_J_DA35_DA36BBBBB00550.35 BB00
2536ipu_J_DA36_DA37B-ABA08660.24 BA08
2546ipu_J_DA37_DT38BBBBB00120.36 BB00
2556ipu_J_DT38_DA39miBBB15820.28 BB15
2566ipu_J_DA39_DC40BBBBB00180.31 BB00
2576ipu_J_DC40_DA41miBBB10360.29 BB10
2586ipu_J_DA41_DC42NANNANT00.52 BA16
2596ipu_J_DC42_DT43A-BAB04570.29 AB04
2606ipu_J_DT43_DT44BBBBB00600.31 BB00
2616ipu_J_DT44_DT45BBBBB01910.19 BB01
2626ipu_J_DT45_DT46A-BAB03290.30 AB03
2636ipu_J_DT46_DG47A-BAB03610.22 AB03
2646ipu_J_DG47_DG48B12BB04440.25 BB04
2656ipu_J_DG48_DT49BBwBB02150.44 BB02
2666ipu_J_DT49_DA50miBBB10530.36 BB10
2676ipu_J_DA50_DG51miBBB10560.36 BB10
2686ipu_J_DG51_DT52NANNANT00.48 BB15
2696ipu_J_DT52_DA53NANNANT00.60 BB17
2706ipu_J_DA53_DT54NANNANT00.92 BB07
2716ipu_J_DT54_DC55NANNANT00.59 BB15
2726ipu_J_DC55_DT56NANNANT00.61 AB02
2736ipu_J_DT56_DG57NANNANT01.63 ZZ02
2746ipu_J_DG57_DC58BBBBB00440.25 BB00
2756ipu_J_DC58_DA59NANNANT00.42 BB07
2766ipu_J_DA59_DG60BBBBB00220.43 BB00
2776ipu_J_DG60_DG61NANNANT00.35 BB15
2786ipu_J_DG61_DT62NANNANT00.52 BB00
2796ipu_J_DT62_DG63NANNANT00.45 BB05
2806ipu_J_DG63_DG64NANNANT00.56 BB10
2816ipu_J_DG64_DA65B12BB04580.26 BB04
2826ipu_J_DA65_DT66NANNANT00.46 BB15
2836ipu_J_DT66_DA67miBBB13370.43 BB13
2846ipu_J_DA67_DT68BBBBB00490.35 BB00
2856ipu_J_DT68_DT69BBBBB01880.14 BB01
2866ipu_J_DT69_DG70BBBBB00700.20 BB00
2876ipu_J_DG70_DA71B12BB04770.12 BB04
2886ipu_J_DA71_DT72miBBB15200.35 BB15

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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