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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Klebsiella pneumoniae sigma4 of sigmaS fusing with the RNA polymerase beta-flap-tip-helix in complex with -35 element DNA

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016ido_C_DG1_DA2B12BB04570.32 BB04
026ido_C_DA2_DT3B-ABA08430.39 BA08
036ido_C_DT3_DT4BBBBB01240.26 BB01
046ido_C_DT4_DT5BBBBB00620.20 BB00
056ido_C_DT5_DG6BBBBB01430.27 BB01
066ido_C_DG6_DT7B-ABA05800.24 BA05
076ido_C_DT7_DC8AAAAA02500.51 AA02
086ido_C_DC8_DA9NANNANT00.29 BB10
096ido_C_DA9_DA10BBBBB00630.25 BB00
106ido_C_DA10_DG11B-ABA05150.37 BA05
116ido_C_DG11_DT12A-BAB01330.31 AB01
126ido_C_DT12_DG13BBBBB00430.47 BB00
136ido_C_DG13_DG14B12BB04520.30 BB04
146ido_C_DG14_DC15NANNANT01.68 OP31
156ido_D_DC1_DC2B-ABA01440.38 BA01
166ido_D_DC2_DA3A-BAB01690.21 AB01
176ido_D_DA3_DC4B-ABA05760.27 BA05
186ido_D_DC4_DT5NANNANT00.52 AA04
196ido_D_DT5_DT6NANNANT00.42 AB03
206ido_D_DT6_DG7BBBBB01360.30 BB01
216ido_D_DG7_DA8NANNANT00.31 BA09
226ido_D_DA8_DC9AAAAA00650.39 AA00
236ido_D_DC9_DA10A-BAB05210.37 AB05
246ido_D_DA10_DA11BBBBB00760.21 BB00
256ido_D_DA11_DA12B12BB04370.20 BB04
266ido_D_DA12_DT13BBBBB01680.23 BB01
276ido_D_DT13_DC14BBBBB00180.25 BB00
286ido_D_DC14_DG15B12BB04130.51 BB04
296ido_E_DG1_DA2NANNANT00.54 IC06
306ido_E_DA2_DT3B-ABA08670.41 BA08
316ido_E_DT3_DT4BBBBB01380.29 BB01
326ido_E_DT4_DT5BBBBB00660.23 BB00
336ido_E_DT5_DG6BBBBB01670.26 BB01
346ido_E_DG6_DT7B-ABA05580.29 BA05
356ido_E_DT7_DC8NANNANT00.51 BB13
366ido_E_DC8_DA9A-BAB05360.32 AB05
376ido_E_DA9_DA10BBBBB00740.21 BB00
386ido_E_DA10_DG11BBBBB00100.34 BB00
396ido_E_DG11_DT12NANNANT00.47 AA00
406ido_E_DT12_DG13A-BAB01160.39 AB01
416ido_E_DG13_DG14miBBB10450.35 BB10
426ido_E_DG14_DC15NANNANT01.87 OP06
436ido_F_DC1_DC2BBBBB00410.45 BB00
446ido_F_DC2_DA3B12BB04630.27 BB04
456ido_F_DA3_DC4B-ABA05800.27 BA05
466ido_F_DC4_DT5NANNANT00.74 AB04
476ido_F_DT5_DT6A-BAB03430.41 AB03
486ido_F_DT6_DG7A-BAB03900.21 AB03
496ido_F_DG7_DA8NANNANT00.34 BA09
506ido_F_DA8_DC9AAAAA00520.42 AA00
516ido_F_DC9_DA10NANNANT00.55 AB05
526ido_F_DA10_DA11BBBBB00770.27 BB00
536ido_F_DA11_DA12B12BB04770.17 BB04
546ido_F_DA12_DT13BBBBB00790.20 BB00
556ido_F_DT13_DC14B-ABA09610.41 BA09
566ido_F_DC14_DG15A-BAB05430.53 AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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