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Conformers: ABBIImiBZICOPNSYNN
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NMR solution structure of the C/D box snoRNA U14

Results of the assignment of 300 detected steps in 10 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016hyk-m10_A_G1_G2AAAAA00740.28 AA00
0026hyk-m1_A_G1_G2AAAAA00770.27 AA00
0036hyk-m2_A_G1_G2AAAAA00700.29 AA00
0046hyk-m3_A_G1_G2AAAAA00670.29 AA00
0056hyk-m4_A_G1_G2AAAAA00760.27 AA00
0066hyk-m5_A_G1_G2AAAAA00680.29 AA00
0076hyk-m6_A_G1_G2AAAAA00710.29 AA00
0086hyk-m7_A_G1_G2AAAAA00680.29 AA00
0096hyk-m8_A_G1_G2AAAAA00700.29 AA00
0106hyk-m9_A_G1_G2AAAAA00670.29 AA00
0116hyk-m10_A_G2_C3AAAAA00740.26 AA00
0126hyk-m1_A_G2_C3AAAAA00750.25 AA00
0136hyk-m2_A_G2_C3AAAAA00790.25 AA00
0146hyk-m3_A_G2_C3AAAAA00790.25 AA00
0156hyk-m4_A_G2_C3AAAAA00750.25 AA00
0166hyk-m5_A_G2_C3AAAAA00790.25 AA00
0176hyk-m6_A_G2_C3AAAAA00750.26 AA00
0186hyk-m7_A_G2_C3AAAAA00830.24 AA00
0196hyk-m8_A_G2_C3AAAAA00790.25 AA00
0206hyk-m9_A_G2_C3AAAAA00810.24 AA00
0216hyk-m10_A_C3_A4AAAAA00880.25 AA00
0226hyk-m1_A_C3_A4AAAAA00860.25 AA00
0236hyk-m2_A_C3_A4AAAAA00860.26 AA00
0246hyk-m3_A_C3_A4AAAAA00860.26 AA00
0256hyk-m4_A_C3_A4AAAAA00880.25 AA00
0266hyk-m5_A_C3_A4AAAAA00860.26 AA00
0276hyk-m6_A_C3_A4AAAAA00890.25 AA00
0286hyk-m7_A_C3_A4AAAAA00880.25 AA00
0296hyk-m8_A_C3_A4AAAAA00850.26 AA00
0306hyk-m9_A_C3_A4AAAAA00890.24 AA00
0316hyk-m10_A_A4_C5AAAAA00770.26 AA00
0326hyk-m1_A_A4_C5AAAAA00780.26 AA00
0336hyk-m2_A_A4_C5AAAAA00750.26 AA00
0346hyk-m3_A_A4_C5AAAAA00770.26 AA00
0356hyk-m4_A_A4_C5AAAAA00790.26 AA00
0366hyk-m5_A_A4_C5AAAAA00740.26 AA00
0376hyk-m6_A_A4_C5AAAAA00780.26 AA00
0386hyk-m7_A_A4_C5AAAAA00780.26 AA00
0396hyk-m8_A_A4_C5AAAAA00730.27 AA00
0406hyk-m9_A_A4_C5AAAAA08800.17 AA08
0416hyk-m10_A_C5_G6AAwAA10780.54 AA10
0426hyk-m1_A_C5_G6AAwAA10790.54 AA10
0436hyk-m2_A_C5_G6AAwAA10790.54 AA10
0446hyk-m3_A_C5_G6AAwAA10790.54 AA10
0456hyk-m4_A_C5_G6AAwAA10770.53 AA10
0466hyk-m5_A_C5_G6AAwAA10780.53 AA10
0476hyk-m6_A_C5_G6AAwAA10770.54 AA10
0486hyk-m7_A_C5_G6AAwAA10760.51 AA10
0496hyk-m8_A_C5_G6AAwAA10780.52 AA10
0506hyk-m9_A_C5_G6AAwAA10780.52 AA10
0516hyk-m10_A_G6_G7NANNANT00.90 OP07
0526hyk-m1_A_G6_G7NANNANT00.90 OP07
0536hyk-m2_A_G6_G7NANNANT00.91 OP07
0546hyk-m3_A_G6_G7NANNANT00.91 OP07
0556hyk-m4_A_G6_G7NANNANT00.97 OP07
0566hyk-m5_A_G6_G7NANNANT00.93 OP07
0576hyk-m6_A_G6_G7NANNANT00.95 OP07
0586hyk-m7_A_G6_G7NANNANT00.98 OP07
0596hyk-m8_A_G6_G7NANNANT00.92 OP07
0606hyk-m9_A_G6_G7NANNANT00.94 OP07
0616hyk-m10_A_G7_U8NANNANT00.80 OP21
0626hyk-m1_A_G7_U8NANNANT00.82 OP21
0636hyk-m2_A_G7_U8NANNANT00.82 OP21
0646hyk-m3_A_G7_U8NANNANT00.84 OP21
0656hyk-m4_A_G7_U8NANNANT01.42 OP21
0666hyk-m5_A_G7_U8NANNANT01.27 OP21
0676hyk-m6_A_G7_U8NANNANT01.42 OP21
0686hyk-m7_A_G7_U8NANNANT01.43 OP21
0696hyk-m8_A_G7_U8NANNANT01.26 OP21
0706hyk-m9_A_G7_U8NANNANT01.26 OP21
0716hyk-m10_A_U8_G9NANNANT01.71 OP22
0726hyk-m1_A_U8_G9NANNANT01.73 OP22
0736hyk-m2_A_U8_G9NANNANT01.72 OP22
0746hyk-m3_A_U8_G9NANNANT01.73 OP22
0756hyk-m4_A_U8_G9NANNANT01.71 IC03
0766hyk-m5_A_U8_G9NANNANT00.81 OP19
0776hyk-m6_A_U8_G9NANNANT01.71 IC03
0786hyk-m7_A_U8_G9NANNANT01.71 IC03
0796hyk-m8_A_U8_G9NANNANT00.80 OP19
0806hyk-m9_A_U8_G9NANNANT00.77 OP19
0816hyk-m10_A_G9_A10NANNANT01.14 BA16
0826hyk-m1_A_G9_A10NANNANT01.14 BA16
0836hyk-m2_A_G9_A10NANNANT01.15 BA16
0846hyk-m3_A_G9_A10NANNANT01.14 BA16
0856hyk-m4_A_G9_A10NANNANT01.13 BA16
0866hyk-m5_A_G9_A10NANNANT01.14 BA16
0876hyk-m6_A_G9_A10NANNANT01.13 BA16
0886hyk-m7_A_G9_A10NANNANT01.14 BA16
0896hyk-m8_A_G9_A10NANNANT01.15 BA16
0906hyk-m9_A_G9_A10NANNANT01.14 BA16
0916hyk-m10_A_A10_U11NANNANT00.45 AA05
0926hyk-m1_A_A10_U11NANNANT00.84 AA10
0936hyk-m2_A_A10_U11NANNANT00.83 AA04
0946hyk-m3_A_A10_U11NANNANT00.82 AA04
0956hyk-m4_A_A10_U11NANNANT00.84 AA10
0966hyk-m5_A_A10_U11NANNANT00.83 AA10
0976hyk-m6_A_A10_U11NANNANT00.84 AA10
0986hyk-m7_A_A10_U11NANNANT00.85 AA10
0996hyk-m8_A_A10_U11NANNANT00.82 AA04
1006hyk-m9_A_A10_U11NANNANT00.83 AA10
1016hyk-m10_A_U11_G12NANNANT00.77 AA10
1026hyk-m1_A_U11_G12NANNANT00.73 AA10
1036hyk-m2_A_U11_G12NANNANT00.73 AA10
1046hyk-m3_A_U11_G12NANNANT00.73 AA10
1056hyk-m4_A_U11_G12NANNANT00.73 AA10
1066hyk-m5_A_U11_G12NANNANT00.56 AA11
1076hyk-m6_A_U11_G12NANNANT00.74 AA10
1086hyk-m7_A_U11_G12NANNANT00.55 AA11
1096hyk-m8_A_U11_G12NANNANT00.74 AA10
1106hyk-m9_A_U11_G12NANNANT00.75 AA10
1116hyk-m10_A_G12_A13AAAAA00790.25 AA00
1126hyk-m1_A_G12_A13AAAAA00780.25 AA00
1136hyk-m2_A_G12_A13AAAAA00800.24 AA00
1146hyk-m3_A_G12_A13AAAAA00800.24 AA00
1156hyk-m4_A_G12_A13AAAAA00760.26 AA00
1166hyk-m5_A_G12_A13AAAAA00730.24 AA00
1176hyk-m6_A_G12_A13AAAAA00780.25 AA00
1186hyk-m7_A_G12_A13AAAAA00690.25 AA00
1196hyk-m8_A_G12_A13AAAAA00760.26 AA00
1206hyk-m9_A_G12_A13AAAAA00750.26 AA00
1216hyk-m10_A_A13_C14AAAAA00740.24 AA00
1226hyk-m1_A_A13_C14AAAAA00750.25 AA00
1236hyk-m2_A_A13_C14AAAAA00790.24 AA00
1246hyk-m3_A_A13_C14AAAAA00780.24 AA00
1256hyk-m4_A_A13_C14AAAAA00740.24 AA00
1266hyk-m5_A_A13_C14AAAAA00800.24 AA00
1276hyk-m6_A_A13_C14AAAAA00730.24 AA00
1286hyk-m7_A_A13_C14AAAAA00750.24 AA00
1296hyk-m8_A_A13_C14AAAAA00790.24 AA00
1306hyk-m9_A_A13_C14AAAAA00790.24 AA00
1316hyk-m10_A_C14_C15AAAAA00790.27 AA00
1326hyk-m1_A_C14_C15AAAAA00850.23 AA00
1336hyk-m2_A_C14_C15AAAAA00870.23 AA00
1346hyk-m3_A_C14_C15AAAAA00880.23 AA00
1356hyk-m4_A_C14_C15AAAAA00830.23 AA00
1366hyk-m5_A_C14_C15AAAAA00890.23 AA00
1376hyk-m6_A_C14_C15AAAAA00790.27 AA00
1386hyk-m7_A_C14_C15AAAAA00850.23 AA00
1396hyk-m8_A_C14_C15AAAAA00900.23 AA00
1406hyk-m9_A_C14_C15AAAAA00860.23 AA00
1416hyk-m10_A_C15_U16AAwAA05120.70 AA05
1426hyk-m1_A_C15_U16AAwAA01460.38 AA01
1436hyk-m2_A_C15_U16AAwAA01450.38 AA01
1446hyk-m3_A_C15_U16AAwAA01480.37 AA01
1456hyk-m4_A_C15_U16AAwAA01460.39 AA01
1466hyk-m5_A_C15_U16AAwAA01480.39 AA01
1476hyk-m6_A_C15_U16NANNANT00.70 AA05
1486hyk-m7_A_C15_U16AAwAA01410.39 AA01
1496hyk-m8_A_C15_U16AAwAA01500.38 AA01
1506hyk-m9_A_C15_U16AAwAA01430.39 AA01
1516hyk-m10_A_U16_U17OPNOP09220.28 OP09
1526hyk-m1_A_U16_U17NANNANT00.31 OP09
1536hyk-m2_A_U16_U17NANNANT00.31 OP09
1546hyk-m3_A_U16_U17NANNANT00.31 OP09
1556hyk-m4_A_U16_U17NANNANT00.30 OP09
1566hyk-m5_A_U16_U17NANNANT00.30 OP09
1576hyk-m6_A_U16_U17OPNOP09220.29 OP09
1586hyk-m7_A_U16_U17NANNANT00.31 OP09
1596hyk-m8_A_U16_U17NANNANT00.30 OP09
1606hyk-m9_A_U16_U17NANNANT00.31 OP09
1616hyk-m10_A_U17_C18NANNANT00.59 OP20
1626hyk-m1_A_U17_C18NANNANT00.60 OP20
1636hyk-m2_A_U17_C18NANNANT00.59 OP20
1646hyk-m3_A_U17_C18NANNANT00.60 OP20
1656hyk-m4_A_U17_C18NANNANT00.64 OP20
1666hyk-m5_A_U17_C18NANNANT00.60 OP20
1676hyk-m6_A_U17_C18NANNANT00.76 OP12
1686hyk-m7_A_U17_C18NANNANT00.59 OP20
1696hyk-m8_A_U17_C18NANNANT00.64 OP20
1706hyk-m9_A_U17_C18NANNANT00.63 OP20
1716hyk-m10_A_C18_G19NANNANT00.61 ZZ1S
1726hyk-m1_A_C18_G19NANNANT00.50 ZZ1S
1736hyk-m2_A_C18_G19NANNANT00.49 ZZ1S
1746hyk-m3_A_C18_G19NANNANT00.50 ZZ1S
1756hyk-m4_A_C18_G19NANNANT00.54 ZZ1S
1766hyk-m5_A_C18_G19NANNANT00.49 ZZ1S
1776hyk-m6_A_C18_G19NANNANT00.61 ZZ1S
1786hyk-m7_A_C18_G19NANNANT00.50 ZZ1S
1796hyk-m8_A_C18_G19NANNANT00.53 ZZ1S
1806hyk-m9_A_C18_G19NANNANT00.54 ZZ1S
1816hyk-m10_A_G19_G20NANNANT00.68 AA01
1826hyk-m1_A_G19_G20NANNANT00.67 AA01
1836hyk-m2_A_G19_G20NANNANT00.69 AA01
1846hyk-m3_A_G19_G20NANNANT00.69 AA01
1856hyk-m4_A_G19_G20NANNANT00.67 AA01
1866hyk-m5_A_G19_G20NANNANT00.69 AA01
1876hyk-m6_A_G19_G20NANNANT00.68 AA01
1886hyk-m7_A_G19_G20NANNANT00.68 AA01
1896hyk-m8_A_G19_G20NANNANT00.67 AA01
1906hyk-m9_A_G19_G20NANNANT00.68 AA01
1916hyk-m10_A_G20_G21AAAAA04760.20 AA04
1926hyk-m1_A_G20_G21AAAAA04780.21 AA04
1936hyk-m2_A_G20_G21AAAAA04750.20 AA04
1946hyk-m3_A_G20_G21AAAAA04770.20 AA04
1956hyk-m4_A_G20_G21AAAAA04790.20 AA04
1966hyk-m5_A_G20_G21AAAAA04780.19 AA04
1976hyk-m6_A_G20_G21AAAAA04790.20 AA04
1986hyk-m7_A_G20_G21AAAAA04760.21 AA04
1996hyk-m8_A_G20_G21AAAAA04790.20 AA04
2006hyk-m9_A_G20_G21AAAAA04780.20 AA04
2016hyk-m10_A_G21_U22AAAAA00780.22 AA00
2026hyk-m1_A_G21_U22AAAAA00770.23 AA00
2036hyk-m2_A_G21_U22AAAAA00790.23 AA00
2046hyk-m3_A_G21_U22AAAAA00810.22 AA00
2056hyk-m4_A_G21_U22AAAAA00770.23 AA00
2066hyk-m5_A_G21_U22AAAAA00830.21 AA00
2076hyk-m6_A_G21_U22AAAAA00790.22 AA00
2086hyk-m7_A_G21_U22AAAAA00760.23 AA00
2096hyk-m8_A_G21_U22AAAAA00750.23 AA00
2106hyk-m9_A_G21_U22AAAAA00740.23 AA00
2116hyk-m10_A_U22_C23AAAAA00900.23 AA00
2126hyk-m1_A_U22_C23AAAAA00930.21 AA00
2136hyk-m2_A_U22_C23AAAAA00950.21 AA00
2146hyk-m3_A_U22_C23AAAAA00940.22 AA00
2156hyk-m4_A_U22_C23AAAAA00910.22 AA00
2166hyk-m5_A_U22_C23AAAAA00930.21 AA00
2176hyk-m6_A_U22_C23AAAAA00910.22 AA00
2186hyk-m7_A_U22_C23AAAAA00920.21 AA00
2196hyk-m8_A_U22_C23AAAAA00930.21 AA00
2206hyk-m9_A_U22_C23AAAAA00940.22 AA00
2216hyk-m10_A_C23_U24AAAAA00620.32 AA00
2226hyk-m1_A_C23_U24AAAAA00590.32 AA00
2236hyk-m2_A_C23_U24AAAAA00580.32 AA00
2246hyk-m3_A_C23_U24AAAAA00580.32 AA00
2256hyk-m4_A_C23_U24AAAAA00590.32 AA00
2266hyk-m5_A_C23_U24AAAAA00600.30 AA00
2276hyk-m6_A_C23_U24AAAAA00580.32 AA00
2286hyk-m7_A_C23_U24AAAAA00610.30 AA00
2296hyk-m8_A_C23_U24AAAAA00580.32 AA00
2306hyk-m9_A_C23_U24AAAAA00580.33 AA00
2316hyk-m10_A_U24_G25A-BAB05190.51 AB05
2326hyk-m1_A_U24_G25A-BAB05190.52 AB05
2336hyk-m2_A_U24_G25A-BAB05200.50 AB05
2346hyk-m3_A_U24_G25A-BAB05220.51 AB05
2356hyk-m4_A_U24_G25A-BAB05180.53 AB05
2366hyk-m5_A_U24_G25A-BAB05180.50 AB05
2376hyk-m6_A_U24_G25A-BAB05180.52 AB05
2386hyk-m7_A_U24_G25A-BAB05170.50 AB05
2396hyk-m8_A_U24_G25A-BAB05190.52 AB05
2406hyk-m9_A_U24_G25A-BAB05170.52 AB05
2416hyk-m10_A_G25_A26NANNANT00.71 BB08
2426hyk-m1_A_G25_A26NANNANT00.72 BB08
2436hyk-m2_A_G25_A26NANNANT00.72 BB08
2446hyk-m3_A_G25_A26NANNANT00.72 BB08
2456hyk-m4_A_G25_A26NANNANT00.71 BB08
2466hyk-m5_A_G25_A26NANNANT00.73 BB08
2476hyk-m6_A_G25_A26NANNANT00.72 BB08
2486hyk-m7_A_G25_A26NANNANT00.71 BB08
2496hyk-m8_A_G25_A26NANNANT00.74 BB08
2506hyk-m9_A_G25_A26NANNANT00.74 BB08
2516hyk-m10_A_A26_G27NANNANT00.76 BA17
2526hyk-m1_A_A26_G27NANNANT00.76 BA17
2536hyk-m2_A_A26_G27NANNANT00.77 BA17
2546hyk-m3_A_A26_G27NANNANT00.77 BA17
2556hyk-m4_A_A26_G27NANNANT00.76 BA17
2566hyk-m5_A_A26_G27NANNANT00.79 BA17
2576hyk-m6_A_A26_G27NANNANT00.76 BA17
2586hyk-m7_A_A26_G27NANNANT00.77 BA17
2596hyk-m8_A_A26_G27NANNANT00.80 BA17
2606hyk-m9_A_A26_G27NANNANT00.81 BA17
2616hyk-m10_A_G27_U28AAAAA00820.22 AA00
2626hyk-m1_A_G27_U28AAAAA00830.21 AA00
2636hyk-m2_A_G27_U28AAAAA00820.22 AA00
2646hyk-m3_A_G27_U28AAAAA00800.23 AA00
2656hyk-m4_A_G27_U28AAAAA00820.22 AA00
2666hyk-m5_A_G27_U28AAAAA00810.22 AA00
2676hyk-m6_A_G27_U28AAAAA00830.22 AA00
2686hyk-m7_A_G27_U28AAAAA00830.22 AA00
2696hyk-m8_A_G27_U28AAAAA00820.22 AA00
2706hyk-m9_A_G27_U28AAAAA00840.21 AA00
2716hyk-m10_A_U28_G29AAAAA00760.25 AA00
2726hyk-m1_A_U28_G29AAAAA00770.24 AA00
2736hyk-m2_A_U28_G29AAAAA00760.24 AA00
2746hyk-m3_A_U28_G29AAAAA00770.24 AA00
2756hyk-m4_A_U28_G29AAAAA00770.25 AA00
2766hyk-m5_A_U28_G29AAAAA00780.24 AA00
2776hyk-m6_A_U28_G29AAAAA00750.25 AA00
2786hyk-m7_A_U28_G29AAAAA00730.25 AA00
2796hyk-m8_A_U28_G29AAAAA00770.24 AA00
2806hyk-m9_A_U28_G29AAAAA00730.25 AA00
2816hyk-m10_A_G29_C30AAAAA00760.29 AA00
2826hyk-m1_A_G29_C30AAAAA00770.29 AA00
2836hyk-m2_A_G29_C30AAAAA00790.28 AA00
2846hyk-m3_A_G29_C30AAAAA00780.28 AA00
2856hyk-m4_A_G29_C30AAAAA00770.29 AA00
2866hyk-m5_A_G29_C30AAAAA00780.28 AA00
2876hyk-m6_A_G29_C30AAAAA00760.29 AA00
2886hyk-m7_A_G29_C30AAAAA00810.27 AA00
2896hyk-m8_A_G29_C30AAAAA00780.28 AA00
2906hyk-m9_A_G29_C30AAAAA00820.26 AA00
2916hyk-m10_A_C30_C31AAAAA00770.31 AA00
2926hyk-m1_A_C30_C31AAAAA00770.31 AA00
2936hyk-m2_A_C30_C31AAAAA00790.30 AA00
2946hyk-m3_A_C30_C31AAAAA00780.30 AA00
2956hyk-m4_A_C30_C31AAAAA00770.31 AA00
2966hyk-m5_A_C30_C31AAAAA00780.31 AA00
2976hyk-m6_A_C30_C31AAAAA00760.32 AA00
2986hyk-m7_A_C30_C31AAAAA00800.30 AA00
2996hyk-m8_A_C30_C31AAAAA00790.30 AA00
3006hyk-m9_A_C30_C31AAAAA00790.30 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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