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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
TFAM bound to Site-X

Results of the assignment of 177 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016hc3_B_DT1_DA2BBBBB00720.36 BB00
0026hc3_B_DA2_DA3B-ABA16420.30 BA16
0036hc3_B_DA3_DC4AAuAA12110.58 AA12
0046hc3_B_DC4_DA5A-BAB01140.38 AB01
0056hc3_B_DA5_DA6NANNANT00.41 BB10
0066hc3_B_DA6_DA7NANNANT00.58 BB10
0076hc3_B_DA7_DA8BB2BB07800.29 BB07
0086hc3_B_DA8_DA9BBBBB00790.14 BB00
0096hc3_B_DA9_DA10BBBBB01650.26 BB01
0106hc3_B_DA10_DT11BBBBB01780.19 BB01
0116hc3_B_DT11_DT12BBBBB01460.31 BB01
0126hc3_B_DT12_DT13B-ABA05740.19 BA05
0136hc3_B_DT13_DC14AAAAA09260.35 AA09
0146hc3_B_DC14_DC15AAAAA02400.34 AA02
0156hc3_B_DC15_DA16NANNANT00.42 AA02
0166hc3_B_DA16_DC17BBBBB01670.27 BB01
0176hc3_B_DC17_DC18B-ABA05640.24 BA05
0186hc3_B_DC18_DA19BBBBB00250.45 BB00
0196hc3_B_DA19_DA20B12BB04610.30 BB04
0206hc3_B_DA20_DA21BBBBB00840.17 BB00
0216hc3_B_DA21_DC22BBBBB00810.26 BB00
0226hc3_C_DT2_DT3A-BAB01150.35 AB01
0236hc3_C_DT3_DT4BBBBB01600.21 BB01
0246hc3_C_DT4_DG5BBBBB01540.33 BB01
0256hc3_C_DG5_DG6NANNANT00.47 BA08
0266hc3_C_DG6_DT7AAAAA0050.51 AA00
0276hc3_C_DT7_DG8AAAAA00130.45 AA00
0286hc3_C_DG8_DG9A-BAB03530.36 AB03
0296hc3_C_DG9_DA10B12BB04690.25 BB04
0306hc3_C_DA10_DA11BBBBB00930.15 BB00
0316hc3_C_DA11_DA12BBBBB00700.22 BB00
0326hc3_C_DA12_DT13B-ABA05830.23 BA05
0336hc3_C_DT13_DT14BBBBB01560.28 BB01
0346hc3_C_DT14_DT15BBBBB01860.11 BB01
0356hc3_C_DT15_DT16BBBBB01650.13 BB01
0366hc3_C_DT16_DT17BBBBB01510.24 BB01
0376hc3_C_DT17_DT18NANNANT00.80 BA10
0386hc3_C_DT18_DG19NANNANT00.54 AA10
0396hc3_C_DG19_DT20A-BAB04530.29 AB04
0406hc3_C_DT20_DT21BBBBB01770.13 BB01
0416hc3_C_DT21_DA22BBBBB00530.29 BB00
0426hc3_C_DA22_DG23BB2BB07810.24 BB07
0436hc3_E_DT1_DA2BBBBB00770.38 BB00
0446hc3_E_DA2_DA3B-ABA16600.27 BA16
0456hc3_E_DA3_DC4AAAAA0870.51 AA08
0466hc3_E_DC4_DA5A-BAB03330.45 AB03
0476hc3_E_DA5_DA6NANNANT00.41 BB10
0486hc3_E_DA6_DA7NANNANT00.50 BB10
0496hc3_E_DA7_DA8BB2BB07760.31 BB07
0506hc3_E_DA8_DA9BBBBB01870.21 BB01
0516hc3_E_DA9_DA10BBBBB01510.33 BB01
0526hc3_E_DA10_DT11BBBBB00480.22 BB00
0536hc3_E_DT11_DT12BBBBB01570.26 BB01
0546hc3_E_DT12_DT13BBBBB00360.27 BB00
0556hc3_E_DT13_DC14NANNANT00.49 BA08
0566hc3_E_DC14_DC15AAAAA02240.46 AA02
0576hc3_E_DC15_DA16NANNANT00.46 AA00
0586hc3_E_DA16_DC17AAAAA02160.47 AA02
0596hc3_E_DC17_DC18NANNANT00.54 BB17
0606hc3_E_DC18_DA19miBBB10680.44 BB10
0616hc3_E_DA19_DA20BB2BB07780.28 BB07
0626hc3_E_DA20_DA21BBBBB00820.13 BB00
0636hc3_E_DA21_DC22BBBBB00880.20 BB00
0646hc3_F_DT2_DT3A-BAB01180.36 AB01
0656hc3_F_DT3_DT4BBBBB01580.17 BB01
0666hc3_F_DT4_DG5BBBBB01560.30 BB01
0676hc3_F_DG5_DG6B-ABA08360.43 BA08
0686hc3_F_DG6_DT7NANNANT00.53 AA04
0696hc3_F_DT7_DG8AAAAA02110.49 AA02
0706hc3_F_DG8_DG9A-BAB03570.34 AB03
0716hc3_F_DG9_DA10B12BB04700.25 BB04
0726hc3_F_DA10_DA11BBBBB00940.13 BB00
0736hc3_F_DA11_DA12BBBBB00730.21 BB00
0746hc3_F_DA12_DT13B-ABA05840.21 BA05
0756hc3_F_DT13_DT14BBBBB01600.24 BB01
0766hc3_F_DT14_DT15BBBBB01880.17 BB01
0776hc3_F_DT15_DT16BBBBB01610.13 BB01
0786hc3_F_DT16_DT17BBBBB01550.27 BB01
0796hc3_F_DT17_DT18NANNANT00.76 BA10
0806hc3_F_DT18_DG19NANNANT00.49 AA10
0816hc3_F_DG19_DT20A-BAB04400.36 AB04
0826hc3_F_DT20_DT21BBBBB01760.12 BB01
0836hc3_F_DT21_DA22BBBBB00160.33 BB00
0846hc3_F_DA22_DG23BB2BB07830.23 BB07
0856hc3_H_DT1_DA2BBBBB00770.38 BB00
0866hc3_H_DA2_DA3B-ABA16560.29 BA16
0876hc3_H_DA3_DC4AAAAA0080.57 AA00
0886hc3_H_DC4_DA5A-BAB03300.45 AB03
0896hc3_H_DA5_DA6NANNANT00.42 BB10
0906hc3_H_DA6_DA7NANNANT00.51 BB10
0916hc3_H_DA7_DA8BB2BB07730.31 BB07
0926hc3_H_DA8_DA9BBBBB01870.21 BB01
0936hc3_H_DA9_DA10BBBBB01480.34 BB01
0946hc3_H_DA10_DT11BBBBB00480.21 BB00
0956hc3_H_DT11_DT12BBBBB01600.26 BB01
0966hc3_H_DT12_DT.A13BBBBB01140.22 BB01
0976hc3_H_DT12_DT.B13B-ABA01300.32 BA01
0986hc3_H_DT.A13_DC.A14B-ABA08180.47 BA08
0996hc3_H_DT.B13_DC.B14AAAAA02790.28 AA02
1006hc3_H_DC.A14_DC.A15AAAAA0280.44 AA02
1016hc3_H_DC.B14_DC.B15NANNANT00.86 BA09
1026hc3_H_DC.A15_DA.A16NANNANT02.10 OP19
1036hc3_H_DC.B15_DA.B16NANNANT00.95 IC04
1046hc3_H_DA.A16_DC.A17NANNANT00.78 AA01
1056hc3_H_DA.B16_DC.B17NANNANT00.65 BA09
1066hc3_H_DC.A17_DC.A18NANNANT00.70 BBS1
1076hc3_H_DC.B17_DC.B18NANNANT00.63 BBS1
1086hc3_H_DC.A18_DA.A19NANNANT00.67 BB12
1096hc3_H_DC.B18_DA.B19BBBBB00190.60 BB00
1106hc3_H_DA.A19_DA.A20NANNANT00.79 AA06
1116hc3_H_DA.B19_DA.B20BBBBB00690.20 BB00
1126hc3_H_DA.A20_DA21BBBBB00840.18 BB00
1136hc3_H_DA.B20_DA21BBBBB00860.23 BB00
1146hc3_H_DA21_DC22BBBBB00890.20 BB00
1156hc3_I_DT2_DT3A-BAB01180.37 AB01
1166hc3_I_DT3_DT4BBBBB01580.17 BB01
1176hc3_I_DT4_DG5BBBBB01530.32 BB01
1186hc3_I_DG5_DG6B-ABA16290.23 BA16
1196hc3_I_DG6_DT7NANNANT00.51 AA04
1206hc3_I_DT7_DG8AAAAA09220.36 AA09
1216hc3_I_DG8_DG9A-BAB03560.34 AB03
1226hc3_I_DG9_DA10B12BB04690.26 BB04
1236hc3_I_DA10_DA11BBBBB00950.13 BB00
1246hc3_I_DA11_DA12BBBBB00750.21 BB00
1256hc3_I_DA12_DT13B-ABA05820.22 BA05
1266hc3_I_DT13_DT14BBBBB01600.25 BB01
1276hc3_I_DT14_DT15BBBBB01870.16 BB01
1286hc3_I_DT15_DT16BBBBB01530.14 BB01
1296hc3_I_DT16_DT17BBBBB01520.27 BB01
1306hc3_I_DT17_DT18NANNANT00.77 BA10
1316hc3_I_DT18_DG19NANNANT00.49 AA10
1326hc3_I_DG19_DT20A-BAB04550.32 AB04
1336hc3_I_DT20_DT21BBBBB01710.15 BB01
1346hc3_I_DT21_DA22BBBBB00160.36 BB00
1356hc3_I_DA22_DG23BB2BB07810.21 BB07
1366hc3_K_DT1_DA2BBBBB00740.35 BB00
1376hc3_K_DA2_DA3B-ABA16470.31 BA16
1386hc3_K_DA3_DC4AAuAA1290.58 AA12
1396hc3_K_DC4_DA5A-BAB03330.46 AB03
1406hc3_K_DA5_DA6NANNANT00.39 BB10
1416hc3_K_DA6_DA7NANNANT00.58 BB10
1426hc3_K_DA7_DA8BB2BB07780.29 BB07
1436hc3_K_DA8_DA9BBBBB00800.14 BB00
1446hc3_K_DA9_DA10BBBBB01660.26 BB01
1456hc3_K_DA10_DT11BBBBB01800.19 BB01
1466hc3_K_DT11_DT12BBBBB01440.31 BB01
1476hc3_K_DT12_DT13B-ABA05570.22 BA05
1486hc3_K_DT13_DC14AAAAA09520.34 AA09
1496hc3_K_DC14_DC15AAAAA02410.34 AA02
1506hc3_K_DC15_DA16NANNANT00.40 AA09
1516hc3_K_DA16_DC17A-BAB03750.23 AB03
1526hc3_K_DC17_DC18B-ABA05580.22 BA05
1536hc3_K_DC18_DA19NANNANT00.67 BB16
1546hc3_K_DA19_DA20BB2BB07790.25 BB07
1556hc3_K_DA20_DA21BBBBB00920.16 BB00
1566hc3_K_DA21_DC22BBBBB00820.26 BB00
1576hc3_L_DT2_DT3A-BAB01190.35 AB01
1586hc3_L_DT3_DT4BBBBB01590.21 BB01
1596hc3_L_DT4_DG5BBBBB01560.33 BB01
1606hc3_L_DG5_DG6NANNANT00.46 BA08
1616hc3_L_DG6_DT7NANNANT00.50 AA00
1626hc3_L_DT7_DG8AAAAA0090.45 AA00
1636hc3_L_DG8_DG9A-BAB03540.36 AB03
1646hc3_L_DG9_DA10B12BB04730.24 BB04
1656hc3_L_DA10_DA11BBBBB00940.14 BB00
1666hc3_L_DA11_DA12BBBBB00670.23 BB00
1676hc3_L_DA12_DT13B-ABA05830.22 BA05
1686hc3_L_DT13_DT14BBBBB01570.28 BB01
1696hc3_L_DT14_DT15BBBBB01850.12 BB01
1706hc3_L_DT15_DT16BBBBB01670.13 BB01
1716hc3_L_DT16_DT17BBBBB00510.22 BB00
1726hc3_L_DT17_DT18NANNANT00.80 BA10
1736hc3_L_DT18_DG19NANNANT00.53 AA10
1746hc3_L_DG19_DT20A-BAB04580.30 AB04
1756hc3_L_DT20_DT21BBBBB01770.12 BB01
1766hc3_L_DT21_DA22BBBBB00550.27 BB00
1776hc3_L_DA22_DG23BB2BB07840.24 BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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