Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli (E2Q) in complex with AP-site containing DNA substrate
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6fbu_B_DG401_DG402 | NAN | NANT | 0 | 0.62 |
| 02 | 6fbu_B_DG402_DC403 | NAN | NANT | 0 | 0.43 |
| 03 | 6fbu_B_DC403_DT404 | BBw | BB16 | 48 | 0.41 |
| 04 | 6fbu_B_DT404_DT405 | BBB | BB00 | 77 | 0.30 |
| 05 | 6fbu_B_DT405_DC406 | B-A | BA08 | 80 | 0.34 |
| 06 | 6fbu_B_DC406_DA407 | AAA | AA02 | 40 | 0.50 |
| 07 | 6fbu_B_DA407_DT408 | AAA | AA02 | 37 | 0.42 |
| 08 | 6fbu_B_DT408_DC409 | BBB | BB01 | 60 | 0.24 |
| 09 | 6fbu_B_DC409_DC410 | BBB | BB01 | 45 | 0.22 |
| 10 | 6fbu_B_DC410_DT411 | BBB | BB00 | 56 | 0.23 |
| 11 | 6fbu_B_DT411_DG412 | NAN | NANT | 0 | 0.60 |
| 12 | 6fbu_C_DC421_DC422 | BBw | BB16 | 10 | 0.42 |
| 13 | 6fbu_C_DC422_DA423 | BBw | BB02 | 11 | 0.44 |
| 14 | 6fbu_C_DA423_DG424 | BBB | BB00 | 40 | 0.40 |
| 15 | 6fbu_C_DG424_DG425 | BBB | BB00 | 31 | 0.16 |
| 16 | 6fbu_C_DG425_DA426 | B-A | BA05 | 14 | 0.28 |
| 17 | 6fbu_C_DG428_DA429 | BBB | BB00 | 68 | 0.20 |
| 18 | 6fbu_C_DA429_DA430 | B12 | BB04 | 91 | 0.16 |
| 19 | 6fbu_C_DA430_DG431 | miB | BB10 | 43 | 0.28 |
| 20 | 6fbu_C_DG431_DC432 | B12 | BB04 | 45 | 0.27 |
| 21 | 6fbu_C_DC432_DC433 | miB | BB12 | 76 | 0.38 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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