Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of human Brachyury (T) in complex with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6f58_C_DA2_DT3 | B-A | BA05 | 89 | 0.21 |
| 02 | 6f58_C_DT3_DT4 | BBB | BB01 | 57 | 0.22 |
| 03 | 6f58_C_DT4_DT5 | BBB | BB01 | 82 | 0.16 |
| 04 | 6f58_C_DT5_DC6 | A-B | AB03 | 82 | 0.31 |
| 05 | 6f58_C_DC6_DA7 | B12 | BB04 | 79 | 0.28 |
| 06 | 6f58_C_DA7_DC8 | B-A | BA01 | 26 | 0.24 |
| 07 | 6f58_C_DC8_DA9 | A-B | AB01 | 76 | 0.14 |
| 08 | 6f58_C_DA9_DC10 | B-A | BA05 | 70 | 0.25 |
| 09 | 6f58_C_DC10_DC11 | B-A | BA10 | 66 | 0.29 |
| 10 | 6f58_C_DC11_DT12 | A-B | AB05 | 48 | 0.20 |
| 11 | 6f58_C_DT12_DA13 | BBB | BB01 | 38 | 0.40 |
| 12 | 6f58_C_DA13_DG14 | BBB | BB00 | 56 | 0.28 |
| 13 | 6f58_C_DG14_DG15 | BB2 | BB07 | 58 | 0.34 |
| 14 | 6f58_C_DG15_DT16 | NAN | NANT | 0 | 0.53 |
| 15 | 6f58_C_DT16_DG17 | A-B | AB05 | 50 | 0.28 |
| 16 | 6f58_C_DG17_DT18 | BBB | BB00 | 35 | 0.23 |
| 17 | 6f58_C_DT18_DG19 | BBB | BB00 | 71 | 0.36 |
| 18 | 6f58_C_DG19_DA20 | BB2 | BB07 | 55 | 0.15 |
| 19 | 6f58_C_DA20_DA21 | BBB | BB01 | 84 | 0.14 |
| 20 | 6f58_C_DA21_DA22 | BBB | BB01 | 42 | 0.24 |
| 21 | 6f58_C_DA22_DT23 | BBB | BB01 | 94 | 0.12 |
| 22 | 6f58_C_DT23_DT24 | B-A | BA05 | 11 | 0.20 |
| 23 | 6f58_D_DA1_DA2 | B12 | BB04 | 18 | 0.27 |
| 24 | 6f58_D_DA2_DT3 | B-A | BA05 | 77 | 0.20 |
| 25 | 6f58_D_DT3_DT4 | BBB | BB01 | 53 | 0.21 |
| 26 | 6f58_D_DT4_DT5 | BBB | BB01 | 78 | 0.16 |
| 27 | 6f58_D_DT5_DC6 | BBB | BB00 | 62 | 0.22 |
| 28 | 6f58_D_DC6_DA7 | B12 | BB04 | 69 | 0.24 |
| 29 | 6f58_D_DA7_DC8 | B-A | BA01 | 87 | 0.21 |
| 30 | 6f58_D_DC8_DA9 | A-B | AB03 | 81 | 0.37 |
| 31 | 6f58_D_DA9_DC10 | B-A | BA01 | 53 | 0.30 |
| 32 | 6f58_D_DC10_DC11 | NAN | NANT | 0 | 0.47 |
| 33 | 6f58_D_DC11_DT12 | A-B | AB05 | 77 | 0.19 |
| 34 | 6f58_D_DT12_DA13 | BBB | BB01 | 29 | 0.41 |
| 35 | 6f58_D_DA13_DG14 | BBB | BB00 | 55 | 0.24 |
| 36 | 6f58_D_DG14_DG15 | B12 | BB04 | 56 | 0.24 |
| 37 | 6f58_D_DG15_DT16 | NAN | NANT | 0 | 0.39 |
| 38 | 6f58_D_DT16_DG17 | A-B | AB05 | 48 | 0.28 |
| 39 | 6f58_D_DG17_DT18 | BBB | BB00 | 84 | 0.20 |
| 40 | 6f58_D_DT18_DG19 | BBB | BB00 | 55 | 0.41 |
| 41 | 6f58_D_DG19_DA20 | BB2 | BB07 | 77 | 0.14 |
| 42 | 6f58_D_DA20_DA21 | BBB | BB01 | 88 | 0.14 |
| 43 | 6f58_D_DA21_DA22 | BBB | BB00 | 28 | 0.21 |
| 44 | 6f58_D_DA22_DT23 | BBB | BB00 | 78 | 0.14 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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