Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Complex of APLF factor and Ku heterodimer bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 98 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6erf_I_DT2_DT3 | NAN | NANT | 0 | 0.29 |
| 02 | 6erf_I_DT3_DT4 | B12 | BB04 | 61 | 0.24 |
| 03 | 6erf_I_DT4_DT5 | B12 | BB04 | 57 | 0.24 |
| 04 | 6erf_I_DT5_DT6 | B12 | BB04 | 50 | 0.23 |
| 05 | 6erf_I_DT6_DA7 | B12 | BB04 | 47 | 0.23 |
| 06 | 6erf_I_DA7_DG8 | B12 | BB04 | 56 | 0.25 |
| 07 | 6erf_I_DG8_DT9 | BB2 | BB08 | 66 | 0.41 |
| 08 | 6erf_I_DT9_DT10 | miB | BB10 | 25 | 0.27 |
| 09 | 6erf_I_DT10_DT11 | B12 | BB04 | 34 | 0.24 |
| 10 | 6erf_I_DT11_DA12 | B12 | BB04 | 30 | 0.22 |
| 11 | 6erf_I_DA12_DT13 | B12 | BB04 | 43 | 0.21 |
| 12 | 6erf_I_DT13_DT14 | B12 | BB04 | 50 | 0.20 |
| 13 | 6erf_I_DT14_DG15 | B12 | BB04 | 70 | 0.15 |
| 14 | 6erf_J_DA22_DT23 | B12 | BB04 | 39 | 0.24 |
| 15 | 6erf_J_DT23_DA24 | B12 | BB04 | 53 | 0.20 |
| 16 | 6erf_J_DA24_DA25 | B12 | BB04 | 61 | 0.20 |
| 17 | 6erf_J_DA25_DA26 | B12 | BB04 | 50 | 0.26 |
| 18 | 6erf_J_DA26_DC27 | B12 | BB04 | 56 | 0.24 |
| 19 | 6erf_J_DC27_DT28 | B12 | BB04 | 40 | 0.25 |
| 20 | 6erf_J_DT28_DA29 | B12 | BB04 | 47 | 0.22 |
| 21 | 6erf_J_DA29_DA30 | B12 | BB04 | 47 | 0.19 |
| 22 | 6erf_J_DA30_DA31 | B12 | BB04 | 59 | 0.19 |
| 23 | 6erf_J_DA31_DA32 | B12 | BB04 | 75 | 0.17 |
| 24 | 6erf_J_DA32_DA33 | B-A | BA08 | 84 | 0.21 |
| 25 | 6erf_K_DT4_DT5 | B12 | BB04 | 65 | 0.22 |
| 26 | 6erf_K_DT5_DT6 | B12 | BB04 | 50 | 0.23 |
| 27 | 6erf_K_DT6_DA7 | B12 | BB04 | 50 | 0.20 |
| 28 | 6erf_K_DA7_DG8 | B12 | BB04 | 59 | 0.25 |
| 29 | 6erf_K_DG8_DT9 | BB2 | BB08 | 67 | 0.42 |
| 30 | 6erf_K_DT9_DT10 | miB | BB10 | 24 | 0.26 |
| 31 | 6erf_K_DT10_DT11 | B12 | BB04 | 31 | 0.24 |
| 32 | 6erf_K_DT11_DA12 | B12 | BB04 | 25 | 0.22 |
| 33 | 6erf_K_DA12_DT13 | B12 | BB04 | 38 | 0.22 |
| 34 | 6erf_K_DT13_DT14 | B12 | BB04 | 46 | 0.21 |
| 35 | 6erf_K_DT14_DG15 | B12 | BB04 | 66 | 0.16 |
| 36 | 6erf_K_DG15_DG16 | B-A | BA08 | 59 | 0.33 |
| 37 | 6erf_L_DA21_DA22 | B12 | BB04 | 48 | 0.23 |
| 38 | 6erf_L_DA22_DT23 | B12 | BB04 | 32 | 0.25 |
| 39 | 6erf_L_DT23_DA24 | B12 | BB04 | 48 | 0.20 |
| 40 | 6erf_L_DA24_DA25 | B12 | BB04 | 57 | 0.18 |
| 41 | 6erf_L_DA25_DA26 | B12 | BB04 | 51 | 0.28 |
| 42 | 6erf_L_DA26_DC27 | B12 | BB04 | 59 | 0.24 |
| 43 | 6erf_L_DC27_DT28 | B12 | BB04 | 44 | 0.25 |
| 44 | 6erf_L_DT28_DA29 | B12 | BB04 | 51 | 0.21 |
| 45 | 6erf_L_DA29_DA30 | B12 | BB04 | 49 | 0.18 |
| 46 | 6erf_M_DT4_DT5 | B12 | BB04 | 62 | 0.22 |
| 47 | 6erf_M_DT5_DT6 | B12 | BB04 | 49 | 0.25 |
| 48 | 6erf_M_DT6_DA7 | B12 | BB04 | 48 | 0.22 |
| 49 | 6erf_M_DA7_DG8 | B12 | BB04 | 56 | 0.25 |
| 50 | 6erf_M_DG8_DT9 | BB2 | BB08 | 75 | 0.40 |
| 51 | 6erf_M_DT9_DT10 | NAN | NANT | 0 | 0.28 |
| 52 | 6erf_M_DT10_DT11 | B12 | BB04 | 30 | 0.24 |
| 53 | 6erf_M_DT11_DA12 | B12 | BB04 | 23 | 0.23 |
| 54 | 6erf_M_DA12_DT13 | B12 | BB04 | 40 | 0.22 |
| 55 | 6erf_M_DT13_DT14 | B12 | BB04 | 47 | 0.21 |
| 56 | 6erf_M_DT14_DG15 | B12 | BB04 | 67 | 0.16 |
| 57 | 6erf_M_DG15_DG16 | B-A | BA08 | 54 | 0.34 |
| 58 | 6erf_N_DT20_DA21 | B12 | BB04 | 63 | 0.19 |
| 59 | 6erf_N_DA21_DA22 | B12 | BB04 | 40 | 0.25 |
| 60 | 6erf_N_DA22_DT23 | B12 | BB04 | 27 | 0.28 |
| 61 | 6erf_N_DT23_DA24 | B12 | BB04 | 46 | 0.20 |
| 62 | 6erf_N_DA24_DA25 | B12 | BB04 | 58 | 0.18 |
| 63 | 6erf_N_DA25_DA26 | B12 | BB04 | 53 | 0.26 |
| 64 | 6erf_N_DA26_DC27 | B12 | BB04 | 57 | 0.24 |
| 65 | 6erf_N_DC27_DT28 | B12 | BB04 | 41 | 0.25 |
| 66 | 6erf_N_DT28_DA29 | B12 | BB04 | 49 | 0.21 |
| 67 | 6erf_N_DA29_DA30 | B12 | BB04 | 43 | 0.19 |
| 68 | 6erf_N_DA30_DA31 | B12 | BB04 | 55 | 0.20 |
| 69 | 6erf_N_DA31_DA32 | B12 | BB04 | 72 | 0.17 |
| 70 | 6erf_N_DA32_DA33 | B-A | BA08 | 83 | 0.22 |
| 71 | 6erf_O_DT2_DT3 | NAN | NANT | 0 | 0.30 |
| 72 | 6erf_O_DT3_DT4 | B12 | BB04 | 61 | 0.23 |
| 73 | 6erf_O_DT4_DT5 | B12 | BB04 | 57 | 0.23 |
| 74 | 6erf_O_DT5_DT6 | B12 | BB04 | 48 | 0.23 |
| 75 | 6erf_O_DT6_DA7 | B12 | BB04 | 44 | 0.24 |
| 76 | 6erf_O_DA7_DG8 | B12 | BB04 | 57 | 0.26 |
| 77 | 6erf_O_DG8_DT9 | BB2 | BB08 | 67 | 0.41 |
| 78 | 6erf_O_DT9_DT10 | NAN | NANT | 0 | 0.27 |
| 79 | 6erf_O_DT10_DT11 | B12 | BB04 | 30 | 0.25 |
| 80 | 6erf_O_DT11_DA12 | B12 | BB04 | 28 | 0.22 |
| 81 | 6erf_O_DA12_DT13 | B12 | BB04 | 40 | 0.22 |
| 82 | 6erf_O_DT13_DT14 | B12 | BB04 | 47 | 0.22 |
| 83 | 6erf_O_DT14_DG15 | B12 | BB04 | 70 | 0.16 |
| 84 | 6erf_P_DC19_DT20 | NAN | NANT | 0 | 0.71 |
| 85 | 6erf_P_DT20_DA21 | B12 | BB04 | 68 | 0.20 |
| 86 | 6erf_P_DA21_DA22 | B12 | BB04 | 41 | 0.25 |
| 87 | 6erf_P_DA22_DT23 | B12 | BB04 | 30 | 0.27 |
| 88 | 6erf_P_DT23_DA24 | B12 | BB04 | 53 | 0.19 |
| 89 | 6erf_P_DA24_DA25 | B12 | BB04 | 61 | 0.19 |
| 90 | 6erf_P_DA25_DA26 | B12 | BB04 | 51 | 0.27 |
| 91 | 6erf_P_DA26_DC27 | B12 | BB04 | 54 | 0.25 |
| 92 | 6erf_P_DC27_DT28 | B12 | BB04 | 35 | 0.26 |
| 93 | 6erf_P_DT28_DA29 | B12 | BB04 | 43 | 0.21 |
| 94 | 6erf_P_DA29_DA30 | B12 | BB04 | 41 | 0.19 |
| 95 | 6erf_P_DA30_DA31 | B12 | BB04 | 60 | 0.18 |
| 96 | 6erf_P_DA31_DA32 | B12 | BB04 | 73 | 0.18 |
| 97 | 6erf_P_DA32_DA33 | B-A | BA08 | 69 | 0.29 |
| 98 | 6erf_P_DA33_DC34 | AAA | AA02 | 24 | 0.43 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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