Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of SRY.hcGAS-21bp dsDNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6edb_C_DC1_DG2 | BBw | BB16 | 75 | 0.31 |
| 02 | 6edb_C_DG2_DA3 | NAN | NANT | 0 | 0.38 |
| 03 | 6edb_C_DA3_DT4 | BBB | BB00 | 76 | 0.17 |
| 04 | 6edb_C_DT4_DC5 | miB | BB10 | 82 | 0.22 |
| 05 | 6edb_C_DC5_DC6 | B12 | BB04 | 88 | 0.15 |
| 06 | 6edb_C_DC6_DG7 | BBB | BB00 | 62 | 0.34 |
| 07 | 6edb_C_DG7_DG8 | BBB | BB00 | 65 | 0.27 |
| 08 | 6edb_C_DG8_DG9 | NAN | NANT | 0 | 0.54 |
| 09 | 6edb_C_DG9_DA10 | BBw | BB02 | 43 | 0.28 |
| 10 | 6edb_C_DA10_DT11 | BBB | BB00 | 70 | 0.28 |
| 11 | 6edb_C_DT11_DC12 | BBw | BB02 | 44 | 0.34 |
| 12 | 6edb_C_DC12_DT13 | BBB | BB00 | 51 | 0.27 |
| 13 | 6edb_C_DT13_DA14 | B-A | BA01 | 26 | 0.44 |
| 14 | 6edb_C_DA14_DA15 | NAN | NANT | 0 | 0.41 |
| 15 | 6edb_C_DA15_DA16 | BBB | BB00 | 67 | 0.28 |
| 16 | 6edb_C_DA16_DC17 | BBB | BB00 | 76 | 0.27 |
| 17 | 6edb_C_DC17_DA18 | B-A | BA08 | 43 | 0.26 |
| 18 | 6edb_C_DA18_DA19 | A-B | AB04 | 49 | 0.39 |
| 19 | 6edb_C_DA19_DT20 | BBw | BB02 | 25 | 0.52 |
| 20 | 6edb_C_DT20_DG21 | BBw | BB11 | 43 | 0.54 |
| 21 | 6edb_D_DG2_DC3 | NAN | NANT | 0 | 0.64 |
| 22 | 6edb_D_DC3_DA4 | AAA | AA09 | 13 | 0.47 |
| 23 | 6edb_D_DA4_DT5 | AAA | AA04 | 63 | 0.40 |
| 24 | 6edb_D_DT5_DT6 | A-B | AB05 | 65 | 0.41 |
| 25 | 6edb_D_DT6_DG7 | BBB | BB00 | 19 | 0.29 |
| 26 | 6edb_D_DG7_DT8 | BBB | BB00 | 64 | 0.33 |
| 27 | 6edb_D_DT8_DT9 | miB | BB10 | 92 | 0.18 |
| 28 | 6edb_D_DT9_DT10 | BBB | BB00 | 49 | 0.36 |
| 29 | 6edb_D_DT10_DA11 | miB | BB10 | 49 | 0.34 |
| 30 | 6edb_D_DA11_DG12 | NAN | NANT | 0 | 0.33 |
| 31 | 6edb_D_DG12_DA13 | BBB | BB00 | 59 | 0.30 |
| 32 | 6edb_D_DA13_DT14 | BBB | BB00 | 71 | 0.26 |
| 33 | 6edb_D_DT14_DC15 | BBB | BB00 | 91 | 0.13 |
| 34 | 6edb_D_DC15_DC16 | miB | BB10 | 74 | 0.19 |
| 35 | 6edb_D_DC16_DC17 | A-B | AB03 | 74 | 0.27 |
| 36 | 6edb_D_DC17_DG18 | B12 | BB04 | 83 | 0.23 |
| 37 | 6edb_D_DG18_DG19 | BBB | BB00 | 71 | 0.24 |
| 38 | 6edb_D_DG19_DA20 | miB | BB15 | 30 | 0.34 |
| 39 | 6edb_D_DA20_DT21 | miB | BB10 | 33 | 0.44 |
| 40 | 6edb_D_DT21_DC22 | AAA | AA02 | 56 | 0.50 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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