Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 35 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6e8u_B_U2_A3 | AAA | AA00 | 91 | 0.10 |
| 02 | 6e8u_B_A3_C4 | AAA | AA00 | 73 | 0.11 |
| 03 | 6e8u_B_C4_G.A5 | AAA | AA00 | 70 | 0.18 |
| 04 | 6e8u_B_C4_G.B5 | NAN | NANT | 0 | 0.48 |
| 05 | 6e8u_B_G.A5_A6 | AAA | AA00 | 73 | 0.23 |
| 06 | 6e8u_B_G.B5_A6 | AAA | AA00 | 76 | 0.22 |
| 07 | 6e8u_B_A6_A7 | AAA | AA00 | 65 | 0.24 |
| 08 | 6e8u_B_A7_G8 | ICL | IC04 | 38 | 0.44 |
| 09 | 6e8u_B_G8_G9 | B12 | BB04 | 45 | 0.26 |
| 10 | 6e8u_B_G9_A10 | OPN | OP18 | 21 | 0.89 |
| 11 | 6e8u_B_A10_A11 | NAN | NANT | 0 | 0.54 |
| 12 | 6e8u_B_A11_G12 | AAA | AA00 | 73 | 0.19 |
| 13 | 6e8u_B_G12_G13 | AAA | AA00 | 81 | 0.20 |
| 14 | 6e8u_B_G13_U14 | ICL | IC01 | 49 | 0.28 |
| 15 | 6e8u_B_U14_U15 | NAN | NANT | 0 | 1.25 |
| 16 | 6e8u_B_U15_U16 | NAN | NANT | 0 | 0.68 |
| 17 | 6e8u_B_U16_G17 | NAN | NANT | 0 | 0.87 |
| 18 | 6e8u_B_G17_G18 | A-B | AB05 | 88 | 0.27 |
| 19 | 6e8u_B_G18_U19 | OPN | OP13 | 16 | 0.83 |
| 20 | 6e8u_B_U19_A20 | NAN | NANT | 0 | 1.47 |
| 21 | 6e8u_B_A20_U21 | NAN | NANT | 0 | 0.70 |
| 22 | 6e8u_B_U21_G22 | NAN | NANT | 0 | 0.29 |
| 23 | 6e8u_B_G22_G23 | NAN | NANT | 0 | 1.52 |
| 24 | 6e8u_B_G23_G24 | NAN | NANT | 0 | 1.04 |
| 25 | 6e8u_B_G24_G25 | NAN | NANT | 0 | 0.47 |
| 26 | 6e8u_B_A27_G28 | AAA | AA08 | 52 | 0.38 |
| 27 | 6e8u_B_G28_U29 | AAA | AA08 | 26 | 0.61 |
| 28 | 6e8u_B_U29_U30 | ICL | IC07 | 19 | 0.49 |
| 29 | 6e8u_B_U30_G31 | AAA | AA00 | 40 | 0.41 |
| 30 | 6e8u_B_G31_U32 | AAA | AA00 | 86 | 0.27 |
| 31 | 6e8u_B_U32_C33 | AAA | AA00 | 90 | 0.16 |
| 32 | 6e8u_B_C33_G34 | AAA | AA00 | 84 | 0.17 |
| 33 | 6e8u_B_G34_U35 | AAA | AA00 | 95 | 0.08 |
| 34 | 6e8u_B_U35_A36 | AAA | AA00 | 97 | 0.14 |
| 35 | 6e8u_B_A36_C37 | AAA | AA00 | 93 | 0.11 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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