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Conformers: ABBIImiBZICOPNSYNN
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Hermes transposase deletion dimer complex with (C/G) DNA and Ca2+

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016dwy_B_DA1_DG2NANNANT00.32 BB03
026dwy_B_DG2_DA3miBBB15550.36 BB15
036dwy_B_DA3_DG4miBBB15410.31 BB15
046dwy_B_DG4_DA5miBBB15730.30 BB15
056dwy_B_DA5_DA6B-ABA0590.41 BA05
066dwy_B_DA6_DC7B-ABA05150.35 BA05
076dwy_B_DC7_DA8NANNANT00.62 BB15
086dwy_B_DA8_DA9BBBBB00420.36 BB00
096dwy_B_DA9_DC10NANNANT00.41 BA09
106dwy_B_DC10_DA11A-BAB05690.31 AB05
116dwy_B_DA11_DA12BBwBB11710.26 BB11
126dwy_B_DA12_DC13NANNANT00.58 BA10
136dwy_B_DC13_DA14A-BAB03300.26 AB03
146dwy_B_DA14_DA15A-BAB03610.28 AB03
156dwy_B_DA15_DG16NANNANT00.49 AB03
166dwy_C_DC1_DT2NANNANT00.38 AA06
176dwy_C_DT2_DT3AAwAA01310.44 AA01
186dwy_C_DT3_DG4A-BAB01230.48 AB01
196dwy_C_DG4_DT5B12BB04520.29 BB04
206dwy_C_DT5_DT6NANNANT00.38 BB03
216dwy_C_DT6_DG7A-BAB05160.23 AB05
226dwy_C_DG7_DT8NANNANT00.43 BB05
236dwy_C_DT8_DT9NANNANT00.58 BB13
246dwy_C_DT9_DG10NANNANT00.39 AA05
256dwy_C_DG10_DT11A-BAB03180.39 AB03
266dwy_C_DT11_DT12B-ABA01120.21 BA01
276dwy_C_DT12_DC13AAwAA01430.31 AA01
286dwy_C_DC13_DT14NANNANT00.73 AA11
296dwy_C_DT14_DC15NANNANT00.56 AA11
306dwy_C_DC15_DT16NANNANT00.88 IC03
316dwy_C_DT16_DG17NANNANT00.87 BB13
326dwy_C_DG17_DG18NANNANT01.39 OP01
336dwy_C_DG18_DG19NANNANT02.46 ZZS2
346dwy_C_DG19_DT20NANNANT00.93 IC07
356dwy_C_DT20_DC21NANNANT00.49 BA13
366dwy_C_DC21_DA22A-BAB05110.34 AB05
376dwy_C_DA22_DC23B12BB04180.29 BB04
386dwy_C_DC23_DG24BBBBB00640.31 BB00
396dwy_C_DG24_DC25B-ABA08590.33 BA08
406dwy_D_DG1_DC2NANNANT00.63 BB16
416dwy_D_DC2_DG3B-ABA08610.33 BA08
426dwy_D_DG3_DT4BBBBB01250.19 BB01
436dwy_D_DT4_DG5BBBBB00970.15 BB00
446dwy_D_DG5_DA6B-ABA09280.39 BA09
456dwy_D_DA6_DC7AAAAA04670.52 AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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