Conformers:
ABBIImiBZICOPNSYNN
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Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Soaked for 40 s in 2 mM Mg2+ and 200 mM K+ at 21 C
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 9 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 1 | 6dmv_B_A1_C2 | AAA | AA00 | 73 | 0.21 |
| 2 | 6dmv_B_C2_A3 | AAA | AA00 | 84 | 0.15 |
| 3 | 6dmv_B_A3_U4 | AAw | AA01 | 88 | 0.14 |
| 4 | 6dmv_b_C5_G6 | NAN | NANT | 0 | 0.64 |
| 5 | 6dmv_C_DC1_DG2 | A-B | AB04 | 56 | 0.30 |
| 6 | 6dmv_C_DG2_DA3 | BBB | BB01 | 27 | 0.22 |
| 7 | 6dmv_C_DA3_DT4 | BBB | BB00 | 37 | 0.35 |
| 8 | 6dmv_C_DT4_DG5 | B-A | BA10 | 43 | 0.46 |
| 9 | 6dmv_C_DG5_DT6 | A-B | AB05 | 49 | 0.37 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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