Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of C-terminal xRRM domain of human Larp7 bound to 7SK stem-loop 4 RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6d12_C_G303_G304 | AAA | AA03 | 83 | 0.23 |
| 02 | 6d12_C_G304_G305 | AAA | AA00 | 44 | 0.17 |
| 03 | 6d12_C_G305_C306 | AAA | AA08 | 86 | 0.19 |
| 04 | 6d12_C_C306_U307 | AAA | AA08 | 68 | 0.24 |
| 05 | 6d12_C_U307_G308 | AAA | AA08 | 74 | 0.28 |
| 06 | 6d12_C_G308_C309 | AAA | AA00 | 66 | 0.20 |
| 07 | 6d12_C_C309_A310 | AAA | AA08 | 80 | 0.23 |
| 08 | 6d12_C_A310_U311 | AAA | AA08 | 73 | 0.31 |
| 09 | 6d12_C_U311_G312 | NAN | NANT | 0 | 1.48 |
| 10 | 6d12_C_G312_U313 | NAN | NANT | 0 | 1.33 |
| 11 | 6d12_C_U313_G314 | NAN | NANT | 0 | 1.25 |
| 12 | 6d12_C_G314_G315 | NAN | NANT | 0 | 1.78 |
| 13 | 6d12_C_G315_C316 | AAA | AA00 | 73 | 0.20 |
| 14 | 6d12_C_C316_A317 | AAA | AA00 | 87 | 0.14 |
| 15 | 6d12_C_A317_G318 | AAA | AA08 | 71 | 0.30 |
| 16 | 6d12_C_G318_C319 | NAN | NANT | 0 | 0.40 |
| 17 | 6d12_C_C319_U320 | AAA | AA08 | 54 | 0.46 |
| 18 | 6d12_C_U320_C321 | AAA | AA08 | 67 | 0.32 |
| 19 | 6d12_C_C321_G322 | AAA | AA08 | 70 | 0.36 |
| 20 | 6d12_C_G322_G323 | NAN | NANT | 0 | 0.41 |
| 21 | 6d12_C_G323_G324 | AAA | AA03 | 60 | 0.30 |
| 22 | 6d12_C_G324_C325 | AAA | AA03 | 87 | 0.17 |
| 23 | 6d12_C_C325_U326 | AAA | AA08 | 81 | 0.31 |
| 24 | 6d12_C_U326_G327 | AAA | AA00 | 78 | 0.26 |
| 25 | 6d12_C_G327_C328 | AAw | AA01 | 79 | 0.27 |
| 26 | 6d12_C_C328_A329 | AAA | AA08 | 38 | 0.27 |
| 27 | 6d12_C_A329_U330 | AAA | AA08 | 74 | 0.24 |
| 28 | 6d12_C_U330_G331 | NAN | NANT | 0 | 1.43 |
| 29 | 6d12_C_G331_U332 | NAN | NANT | 0 | 1.93 |
| 30 | 6d12_C_U332_G333 | NAN | NANT | 0 | 0.79 |
| 31 | 6d12_C_G333_G334 | NAN | NANT | 0 | 1.71 |
| 32 | 6d12_C_G334_C335 | AAA | AA00 | 58 | 0.19 |
| 33 | 6d12_C_C335_A336 | AAA | AA08 | 90 | 0.21 |
| 34 | 6d12_C_A336_G337 | AAw | AA11 | 28 | 0.42 |
| 35 | 6d12_C_G337_C338 | AAA | AA08 | 69 | 0.24 |
| 36 | 6d12_C_C338_U339 | NAN | NANT | 0 | 0.61 |
| 37 | 6d12_C_U339_C340 | AAw | AA06 | 12 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|