Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6cyt_N_A22_U23 | AAA | AA00 | 61 | 0.19 |
| 02 | 6cyt_N_U23_C24 | NAN | NANT | 0 | 0.58 |
| 03 | 6cyt_N_C24_U25 | AAA | AA00 | 82 | 0.24 |
| 04 | 6cyt_N_U25_G26 | NAN | NANT | 0 | 0.60 |
| 05 | 6cyt_N_G26_A27 | AAA | AA00 | 75 | 0.10 |
| 06 | 6cyt_N_A27_G28 | AAA | AA08 | 83 | 0.33 |
| 07 | 6cyt_N_G28_C29 | AAA | AA00 | 79 | 0.20 |
| 08 | 6cyt_N_C29_C30 | A-B | AB05 | 46 | 0.45 |
| 09 | 6cyt_N_C30_U31 | NAN | NANT | 0 | 1.29 |
| 10 | 6cyt_N_U31_G32 | NAN | NANT | 0 | 1.44 |
| 11 | 6cyt_N_G32_G33 | NAN | NANT | 0 | 1.13 |
| 12 | 6cyt_N_G33_G34 | NAN | NANT | 0 | 0.56 |
| 13 | 6cyt_N_G34_A35 | NAN | NANT | 0 | 0.88 |
| 14 | 6cyt_N_A35_G36 | NAN | NANT | 0 | 0.86 |
| 15 | 6cyt_N_G36_C37 | NAN | NANT | 0 | 0.40 |
| 16 | 6cyt_N_C37_U38 | NAN | NANT | 0 | 0.35 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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