Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Thermus thermophiles RNA polymerase in complex with promoter DNA and antibiotic Kanglemycin A
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6cuu_G_DT3_DG4 | NAN | NANT | 0 | 0.64 |
| 02 | 6cuu_G_DG4_DC5 | NAN | NANT | 0 | 0.52 |
| 03 | 6cuu_G_DC5_DA6 | NAN | NANT | 0 | 0.35 |
| 04 | 6cuu_G_DA6_DT7 | NAN | NANT | 0 | 0.81 |
| 05 | 6cuu_G_DT7_DC8 | B12 | BB04 | 41 | 0.35 |
| 06 | 6cuu_G_DC8_DA9 | B12 | BB04 | 59 | 0.12 |
| 07 | 6cuu_G_DA9_DG10 | BBB | BB00 | 76 | 0.10 |
| 08 | 6cuu_G_DG10_DA11 | B-A | BA08 | 84 | 0.28 |
| 09 | 6cuu_G_DA11_DG12 | AAw | AA01 | 31 | 0.37 |
| 10 | 6cuu_G_DG12_DC13 | AAA | AA00 | 77 | 0.22 |
| 11 | 6cuu_G_DC13_DC14 | NAN | NANT | 0 | 0.97 |
| 12 | 6cuu_G_DC14_DC15 | AAA | AA00 | 18 | 0.54 |
| 13 | 6cuu_G_DC15_DA16 | AAA | AA08 | 50 | 0.38 |
| 14 | 6cuu_G_DA16_DA17 | AAA | AA04 | 88 | 0.25 |
| 15 | 6cuu_G_DA17_DA18 | AAA | AA04 | 64 | 0.37 |
| 16 | 6cuu_G_DA18_DA19 | NAN | NANT | 0 | 0.69 |
| 17 | 6cuu_H_DT1_DA2 | NAN | NANT | 0 | 1.06 |
| 18 | 6cuu_H_DA2_DT3 | NAN | NANT | 0 | 1.12 |
| 19 | 6cuu_H_DT3_DA4 | BBw | BB16 | 86 | 0.27 |
| 20 | 6cuu_H_DA4_DA5 | BBB | BB00 | 57 | 0.26 |
| 21 | 6cuu_H_DA5_DT6 | NAN | NANT | 0 | 0.63 |
| 22 | 6cuu_H_DT6_DG7 | NAN | NANT | 0 | 1.52 |
| 23 | 6cuu_H_DG7_DG8 | NAN | NANT | 0 | 1.11 |
| 24 | 6cuu_H_DG8_DG9 | BBB | BB00 | 85 | 0.27 |
| 25 | 6cuu_H_DG9_DA10 | B12 | BB04 | 51 | 0.31 |
| 26 | 6cuu_H_DA10_DG11 | NAN | NANT | 0 | 0.80 |
| 27 | 6cuu_H_DG11_DC12 | NAN | NANT | 0 | 0.80 |
| 28 | 6cuu_H_DC16_DT17 | B12 | BB04 | 60 | 0.27 |
| 29 | 6cuu_H_DT17_DC18 | miB | BB15 | 73 | 0.24 |
| 30 | 6cuu_H_DC18_DT19 | BBB | BB00 | 51 | 0.24 |
| 31 | 6cuu_H_DT19_DG20 | BBB | BB01 | 18 | 0.31 |
| 32 | 6cuu_H_DG20_DA21 | NAN | NANT | 0 | 0.45 |
| 33 | 6cuu_H_DA21_DT22 | NAN | NANT | 0 | 0.29 |
| 34 | 6cuu_H_DT22_DG23 | NAN | NANT | 0 | 0.46 |
| 35 | 6cuu_H_DG23_DC24 | NAN | NANT | 0 | 0.57 |
| 36 | 6cuu_H_DC24_DA25 | NAN | NANT | 0 | 0.80 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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