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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of MBD2 complex with methylated CpG island

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016cnp_C_DG1_DC2BBBBB00390.22 BB00
026cnp_C_DC2_DC3BBBBB00770.25 BB00
036cnp_C_DC3_DA4BB2BB07850.20 BB07
046cnp_C_DA4_DC5B-ABA05780.21 BA05
056cnp_C_DC5_5CM6BBBBB01370.36 BB01
066cnp_C_5CM6_DG7BBBBB00770.28 BB00
076cnp_C_DG7_DG8BBBBB00840.20 BB00
086cnp_C_DG8_DT9BBBBB00950.14 BB00
096cnp_C_DT9_DG10BB2BB07820.28 BB07
106cnp_C_DG10_DG11BBBBB00720.20 BB00
116cnp_C_DG11_DC12B-ABA01800.17 BA01
126cnp_D_DG1_DC2BBBBB00540.24 BB00
136cnp_D_DC2_DC3BBBBB00760.20 BB00
146cnp_D_DC3_DA4BB2BB07890.24 BB07
156cnp_D_DA4_DC5B-ABA05640.21 BA05
166cnp_D_DC5_5CM6A-BAB01310.50 AB01
176cnp_D_5CM6_DG7B12BB04710.23 BB04
186cnp_D_DG7_DG8BBBBB00780.16 BB00
196cnp_D_DG8_DT9BBBBB00780.21 BB00
206cnp_D_DT9_DG10BB2BB07780.27 BB07
216cnp_D_DG10_DG11BBBBB00710.22 BB00
226cnp_D_DG11_DC12B-ABA01790.16 BA01
236cnp_E_DG1_DC2BBBBB00700.20 BB00
246cnp_E_DC2_DC3BBBBB00800.27 BB00
256cnp_E_DC3_DA4BB2BB07970.19 BB07
266cnp_E_DA4_DC5B-ABA01300.16 BA01
276cnp_E_DC5_5CM6BBBBB01300.31 BB01
286cnp_E_5CM6_DG7BBBBB00330.35 BB00
296cnp_E_DG7_DG8BBBBB00910.14 BB00
306cnp_E_DG8_DT9BBBBB00610.17 BB00
316cnp_E_DT9_DG10BB2BB07780.26 BB07
326cnp_E_DG10_DG11BBBBB00530.24 BB00
336cnp_E_DG11_DC12B-ABA05270.31 BA05
346cnp_F_DG1_DC2BBBBB00720.18 BB00
356cnp_F_DC2_DC3BBBBB00840.23 BB00
366cnp_F_DC3_DA4BB2BB07850.23 BB07
376cnp_F_DA4_DC5B-ABA05350.25 BA05
386cnp_F_DC5_5CM6A-BAB03660.23 AB03
396cnp_F_5CM6_DG7BB2BB07680.32 BB07
406cnp_F_DG7_DG8BBBBB00780.21 BB00
416cnp_F_DG8_DT9BBBBB00120.18 BB00
426cnp_F_DT9_DG10BB2BB07760.25 BB07
436cnp_F_DG10_DG11BBBBB00750.25 BB00
446cnp_F_DG11_DC12B-ABA01550.16 BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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