Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MBD2 in complex with methylated DNA

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016c1a_C_DC1_DG2BBBBB00700.32 BB00
026c1a_C_DG2_DG3BBBBB00750.31 BB00
036c1a_C_DG3_DA4BB2BB07890.28 BB07
046c1a_C_DA4_DA5BBBBB00730.18 BB00
056c1a_C_DA5_DT6BBBBB01860.20 BB01
066c1a_C_DT6_DG7BBBBB00350.38 BB00
076c1a_C_DG7_DT8BBBBB00770.28 BB00
086c1a_C_DT8_DA9BB2BB07860.26 BB07
096c1a_C_DA9_DG10BBBBB00810.21 BB00
106c1a_C_DG10_DG11B12BB04920.12 BB04
116c1a_C_DG11_DC12B-ABA01820.25 BA01
126c1a_D_DG1_DC2BBBBB00490.23 BB00
136c1a_D_DC2_DC3BBBBB00810.20 BB00
146c1a_D_DC3_DT4BBBBB00850.27 BB00
156c1a_D_DT4_DA5B-ABA05690.28 BA05
166c1a_D_DA5_5CM6BBBBB01260.44 BB01
176c1a_D_5CM6_DA7B12BB04730.30 BB04
186c1a_D_DA7_DT8B-ABA05850.14 BA05
196c1a_D_DT8_DT9A-BAB01200.46 AB01
206c1a_D_DT9_DC10BBBBB00710.36 BB00
216c1a_D_DC10_DC11BBBBB0070.48 BB00
226c1a_D_DC11_DG12B-ABA08390.36 BA08
236c1a_G_DC1_DG2BBBBB00690.33 BB00
246c1a_G_DG2_DG3BBBBB00740.31 BB00
256c1a_G_DG3_DA4BB2BB07930.25 BB07
266c1a_G_DA4_DA5BBBBB01710.23 BB01
276c1a_G_DA5_DT6BBBBB01730.23 BB01
286c1a_G_DT6_DG7BBBBB00550.35 BB00
296c1a_G_DG7_DT8BBBBB00700.28 BB00
306c1a_G_DT8_DA9BB2BB07880.31 BB07
316c1a_G_DA9_DG10BBBBB00860.17 BB00
326c1a_G_DG10_DG11B12BB04920.15 BB04
336c1a_G_DG11_DC12B-ABA01620.31 BA01
346c1a_H_DG1_DC2BBBBB00510.21 BB00
356c1a_H_DC2_DC3BBBBB00610.19 BB00
366c1a_H_DC3_DT4BBBBB00790.28 BB00
376c1a_H_DT4_DA5B-ABA05720.28 BA05
386c1a_H_DA5_5CM6BBBBB01360.43 BB01
396c1a_H_5CM6_DA7BBBBB00540.36 BB00
406c1a_H_DA7_DT8B-ABA05820.15 BA05
416c1a_H_DT8_DT9A-BAB01230.47 AB01
426c1a_H_DT9_DC10BBBBB00740.34 BB00
436c1a_H_DC10_DC11B-ABA08550.39 BA08
446c1a_H_DC11_DG12NANNANT00.50 AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N