Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of HIV-1 RT complexed with an RNA/DNA hybrid sequence non-preferred for RNA hydrolysis
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 43 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6bsj_D_DG2_DT3 | miB | BB10 | 47 | 0.21 |
| 02 | 6bsj_D_DT3_DA4 | NAN | NANT | 0 | 0.35 |
| 03 | 6bsj_D_DA4_DT5 | AAA | AA00 | 27 | 0.47 |
| 04 | 6bsj_D_DT5_DG6 | AAA | AA00 | 51 | 0.33 |
| 05 | 6bsj_D_DG6_DC7 | AAA | AA00 | 91 | 0.20 |
| 06 | 6bsj_D_DC7_DC8 | AAw | AA01 | 64 | 0.28 |
| 07 | 6bsj_D_DC8_DT9 | AAA | AA00 | 64 | 0.22 |
| 08 | 6bsj_D_DT9_DA10 | AAw | AA01 | 62 | 0.20 |
| 09 | 6bsj_D_DA10_DT11 | AAA | AA08 | 82 | 0.26 |
| 10 | 6bsj_D_DT11_DA12 | AAw | AA01 | 55 | 0.20 |
| 11 | 6bsj_D_DA12_DG13 | AAA | AA08 | 81 | 0.18 |
| 12 | 6bsj_D_DG13_DT14 | AAA | AA08 | 76 | 0.23 |
| 13 | 6bsj_D_DT14_DT15 | NAN | NANT | 0 | 0.44 |
| 14 | 6bsj_D_DT15_DA16 | NAN | NANT | 0 | 0.44 |
| 15 | 6bsj_D_DA16_DT17 | AAA | AA00 | 67 | 0.19 |
| 16 | 6bsj_D_DT17_DT18 | AAA | AA00 | 76 | 0.21 |
| 17 | 6bsj_D_DT18_DG19 | AAA | AA00 | 87 | 0.21 |
| 18 | 6bsj_D_DG19_DT20 | AAA | AA00 | 47 | 0.24 |
| 19 | 6bsj_D_DT20_DG21 | AAA | AA00 | 55 | 0.27 |
| 20 | 6bsj_D_DG21_DG22 | NAN | NANT | 0 | 0.76 |
| 21 | 6bsj_D_DG22_DC23 | AAA | AA00 | 59 | 0.26 |
| 22 | 6bsj_D_DC23_DC24 | NAN | NANT | 0 | 0.55 |
| 23 | 6bsj_R_G3_A4 | NAN | NANT | 0 | 1.44 |
| 24 | 6bsj_R_G6_G7 | NAN | NANT | 0 | 0.47 |
| 25 | 6bsj_R_G7_C8 | AAA | AA00 | 40 | 0.34 |
| 26 | 6bsj_R_C8_C9 | AAA | AA00 | 77 | 0.26 |
| 27 | 6bsj_R_C9_A10 | AAA | AA08 | 57 | 0.21 |
| 28 | 6bsj_R_A10_C11 | AAA | AA08 | 84 | 0.20 |
| 29 | 6bsj_R_C11_A12 | AAA | AA08 | 87 | 0.14 |
| 30 | 6bsj_R_A12_A13 | AAA | AA08 | 88 | 0.23 |
| 31 | 6bsj_R_A13_U14 | AAA | AA08 | 78 | 0.17 |
| 32 | 6bsj_R_U14_A15 | AAA | AA00 | 82 | 0.14 |
| 33 | 6bsj_R_A15_A16 | AAA | AA00 | 79 | 0.18 |
| 34 | 6bsj_R_A16_C17 | AAA | AA00 | 88 | 0.16 |
| 35 | 6bsj_R_U18_A19 | AAA | AA00 | 93 | 0.10 |
| 36 | 6bsj_R_A19_U20 | AAA | AA08 | 86 | 0.21 |
| 37 | 6bsj_R_U20_A21 | AAA | AA08 | 84 | 0.22 |
| 38 | 6bsj_R_A21_G22 | AAA | AA00 | 74 | 0.14 |
| 39 | 6bsj_R_G22_G23 | AAA | AA08 | 82 | 0.20 |
| 40 | 6bsj_R_G23_C24 | AAA | AA08 | 88 | 0.14 |
| 41 | 6bsj_R_C24_A25 | AAA | AA08 | 85 | 0.19 |
| 42 | 6bsj_R_A25_U26 | AAA | AA08 | 67 | 0.30 |
| 43 | 6bsj_R_U26_A27 | NAN | NANT | 0 | 0.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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