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Conformers: ABBIImiBZICOPNSYNN
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Structure of HIV-1 RT complexed with RNA/DNA hybrid in an RNA hydrolysis-off mode

Results of the assignment of 43 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016bsg_D_DG2_DT3NANNANT00.77 BB11
026bsg_D_DT3_DA4NANNANT00.58 BB13
036bsg_D_DA4_DT5AAAAA00820.18 AA00
046bsg_D_DT5_DG6A-BAB05600.22 AB05
056bsg_D_DG6_DC7BBBBB01460.24 BB01
066bsg_D_DC7_DC8NANNANT00.67 AA01
076bsg_D_DC8_DA9NANNANT00.61 AB02
086bsg_D_DA9_DC10AAAAA00840.20 AA00
096bsg_D_DC10_DT11AAAAA00880.20 AA00
106bsg_D_DT11_DA12AAAAA00910.12 AA00
116bsg_D_DA12_DG13NANNANT00.44 AA10
126bsg_D_DG13_DT14AAAAA08670.21 AA08
136bsg_D_DT14_DT15A-BAB05340.23 AB05
146bsg_D_DT15_DA16NANNANT00.42 BA10
156bsg_D_DA16_DT17AAAAA00920.14 AA00
166bsg_D_DT17_DT18AAAAA00500.21 AA00
176bsg_D_DT18_DG19AAAAA00830.16 AA00
186bsg_D_DG19_DT20AAAAA00840.20 AA00
196bsg_D_DT20_DG21AAAAA00750.27 AA00
206bsg_D_DG21_DG22AAwAA01820.16 AA01
216bsg_D_DG22_DC23AAAAA08850.19 AA08
226bsg_D_DC23_DC24NANNANT00.47 BB13
236bsg_R_G3_A4NANNANT01.32 OPS1
246bsg_R_G6_G7AAwAA01130.48 AA01
256bsg_R_G7_C8AAAAA08490.30 AA08
266bsg_R_C8_C9AAAAA08540.30 AA08
276bsg_R_C9_A10AAAAA08850.23 AA08
286bsg_R_A10_C11AAAAA00740.17 AA00
296bsg_R_C11_A12AAAAA00760.12 AA00
306bsg_R_A12_A13AAAAA00890.13 AA00
316bsg_R_A13_U14AAAAA00950.12 AA00
326bsg_R_U14_A15AAAAA00760.12 AA00
336bsg_R_A15_A16AAAAA00840.16 AA00
346bsg_R_A16_C17AAAAA00960.09 AA00
356bsg_R_U18_A19AAAAA00840.17 AA00
366bsg_R_A19_G20AAAAA00980.07 AA00
376bsg_R_G20_U21AAAAA00920.15 AA00
386bsg_R_U21_G22AAAAA00880.23 AA00
396bsg_R_G22_G23AAwAA11540.33 AA11
406bsg_R_G23_C24AAwAA06830.30 AA06
416bsg_R_C24_A25AAAAA08600.38 AA08
426bsg_R_A25_U26AAwAA01420.36 AA01
436bsg_R_U26_A27AAwAA11590.53 AA11

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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