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Conformers: ABBIImiBZICOPNSYNN
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Group I self-splicing intron P4-P6 domain mutant U131A (with isopropanol soaking)

Results of the assignment of 314 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016bjx_A_G103_A104AAAAA03310.40 AA03
0026bjx_A_A104_A105NANNANT00.43 AA10
0036bjx_A_A105_U106NANNANT00.53 OP17
0046bjx_A_U106_U107NANNANT00.43 OP13
0056bjx_A_U107_G108AAAAA00930.16 AA00
0066bjx_A_G108_C109AAwAA06950.23 AA06
0076bjx_A_C109_G110AAAAA08600.25 AA08
0086bjx_A_G110_G111AAAAA00870.14 AA00
0096bjx_A_G111_G112AAAAA00880.10 AA00
0106bjx_A_G112_A113AAAAA08790.35 AA08
0116bjx_A_A113_A114AAuAA12700.38 AA12
0126bjx_A_A114_A115AAAAA08860.34 AA08
0136bjx_A_A115_G116AAAAA08880.32 AA08
0146bjx_A_G116_G117AAAAA00860.09 AA00
0156bjx_A_G117_G118AAAAA08820.11 AA08
0166bjx_A_G118_G119AAAAA00780.14 AA00
0176bjx_A_G119_U120AAAAA08910.20 AA08
0186bjx_A_U120_C121AAAAA00640.27 AA00
0196bjx_A_C121_A122NANNANT00.85 IC07
0206bjx_A_A122_A123NANNANT01.35 OP23
0216bjx_A_A123_C124NANNANT00.91 AA01
0226bjx_A_C124_A125NANNANT00.99 OP04
0236bjx_A_A125_G126OPNOPS1860.20 OPS1
0246bjx_A_G126_C127AAAAA08830.14 AA08
0256bjx_A_C127_C128AAAAA00810.24 AA00
0266bjx_A_C128_G129AAAAA00880.10 AA00
0276bjx_A_G129_U130AAAAA08150.29 AA08
0286bjx_A_U130_A131NANNANT01.23 OP05
0296bjx_A_A131_C132NANNANT01.45 OP01
0306bjx_A_C132_A133AAAAA00870.13 AA00
0316bjx_A_A133_G134AAAAA00830.09 AA00
0326bjx_A_G134_U135AAAAA08740.25 AA08
0336bjx_A_U135_A136AAAAA08870.17 AA08
0346bjx_A_A136_C137AAAAA08870.21 AA08
0356bjx_A_C137_C138A-BAB05780.32 AB05
0366bjx_A_C138_A139NANNANT01.37 OP16
0376bjx_A_A139_A140AAAAA08710.24 AA08
0386bjx_A_A140_G141AAAAA08640.35 AA08
0396bjx_A_G141_U142AAAAA00810.18 AA00
0406bjx_A_U142_C143AAAAA08880.14 AA08
0416bjx_A_C143_U144AAAAA08900.18 AA08
0426bjx_A_U144_C145AAAAA08940.13 AA08
0436bjx_A_C145_A146AAAAA00940.09 AA00
0446bjx_A_A146_G147AAAAA00580.23 AA00
0456bjx_A_G147_G148AAAAA00700.15 AA00
0466bjx_A_G148_G149AAAAA00690.17 AA00
0476bjx_A_G149_G150AAAAA00720.23 AA00
0486bjx_A_G150_A151OPNOP03920.09 OP03
0496bjx_A_A151_A152AAAAA08720.38 AA08
0506bjx_A_A152_A153AAAAA00590.30 AA00
0516bjx_A_A153_C154NANNANT00.83 AA04
0526bjx_A_C154_U155AAAAA00740.29 AA00
0536bjx_A_U155_U156AAAAA08920.16 AA08
0546bjx_A_U156_U157AAAAA00820.21 AA00
0556bjx_A_U157_G158AAAAA00870.13 AA00
0566bjx_A_G158_A159AAAAA00950.09 AA00
0576bjx_A_A159_G160AAAAA08910.16 AA08
0586bjx_A_G160_A161AAAAA00820.17 AA00
0596bjx_A_A161_U162AAAAA00740.23 AA00
0606bjx_A_U162_G163AAAAA08700.47 AA08
0616bjx_A_G163_G164A-BAB05700.32 AB05
0626bjx_A_G164_C165OPNOP12210.46 OP12
0636bjx_A_C165_C166AAAAA08870.19 AA08
0646bjx_A_C166_U167NANNANT00.30 ZZ01
0656bjx_A_U167_U168NANNANT00.68 OP21
0666bjx_A_U168_G169NANNANT00.89 OP18
0676bjx_A_G169_C170AAAAA00350.30 AA00
0686bjx_A_C170_A171NANNANT00.77 AA01
0696bjx_A_A171_A172NANNANT00.67 OP26
0706bjx_A_A172_A173AAAAA00650.28 AA00
0716bjx_A_A173_G174AAAAA08890.27 AA08
0726bjx_A_G174_G175AAAAA08940.22 AA08
0736bjx_A_G175_G176AAAAA08810.19 AA08
0746bjx_A_G176_U177AAAAA00780.23 AA00
0756bjx_A_U177_A178OPNOP28420.42 OP28
0766bjx_A_A178_U179NANNANT00.61 OP21
0776bjx_A_U179_G180NANNANT00.23 OP11
0786bjx_A_G180_G181AAwAA01640.21 AA01
0796bjx_A_G181_U182A-BAB05580.25 AB05
0806bjx_A_U182_A183NANNANT00.92 OP11
0816bjx_A_A183_A184AAAAA09520.24 AA09
0826bjx_A_A184_U185NANNANT00.41 OP05
0836bjx_A_U185_A186NANNANT01.08 OP16
0846bjx_A_A186_A187NANNANT00.83 IC07
0856bjx_A_A187_G188NANNANT01.48 OPS1
0866bjx_A_G188_C189NANNANT01.55 OP16
0876bjx_A_C189_U190AAAAA00610.12 AA00
0886bjx_A_U190_G191AAAAA08850.18 AA08
0896bjx_A_G191_A192AAAAA04770.18 AA04
0906bjx_A_A192_C193AAAAA08740.18 AA08
0916bjx_A_C193_G194AAAAA08770.15 AA08
0926bjx_A_G194_G195AAAAA00680.18 AA00
0936bjx_A_G195_A196AAAAA00850.16 AA00
0946bjx_A_A196_C197AAAAA08850.24 AA08
0956bjx_A_C197_A198NANNANT00.54 AA07
0966bjx_A_A198_U199NANNANT00.94 OP21
0976bjx_A_U199_G200NANNANT01.19 OPS1
0986bjx_A_G200_G201AAAAA08150.35 AA08
0996bjx_A_G201_U202AAAAA00650.31 AA00
1006bjx_A_U202_C203AAAAA08790.24 AA08
1016bjx_A_C203_C204AAAAA00880.17 AA00
1026bjx_A_C204_U205AAAAA00740.25 AA00
1036bjx_A_U205_A206NANNANT00.42 AB04
1046bjx_A_A206_A207OPNOP15680.51 OP15
1056bjx_A_A207_C208AAAAA04270.63 AA04
1066bjx_A_C208_C209AAAAA00860.18 AA00
1076bjx_A_C209_A210NANNANT00.83 OP30
1086bjx_A_A210_C211NANNANT01.09 OP31
1096bjx_A_C211_G212AAAAA00620.22 AA00
1106bjx_A_G212_C213AAAAA00670.22 AA00
1116bjx_A_C213_A214AAAAA00860.21 AA00
1126bjx_A_A214_G215AAAAA08790.20 AA08
1136bjx_A_G215_C216AAwAA06250.28 AA06
1146bjx_A_C216_C217AAAAA03440.35 AA03
1156bjx_A_C217_A218A-BAB05900.30 AB05
1166bjx_A_A218_A219OPNOP26650.39 OP26
1176bjx_A_A219_G220AAAAA08730.33 AA08
1186bjx_A_G220_U221AAAAA00860.19 AA00
1196bjx_A_U221_C222AAAAA08870.19 AA08
1206bjx_A_C222_C223AAAAA00820.20 AA00
1216bjx_A_C223_U224AAAAA00890.20 AA00
1226bjx_A_U224_A225A-BAB05790.27 AB05
1236bjx_A_A225_A226OPNOP26700.51 OP26
1246bjx_A_A226_G227AAAAA08560.46 AA08
1256bjx_A_G227_U228AAAAA00820.15 AA00
1266bjx_A_U228_C229AAAAA00780.15 AA00
1276bjx_A_C229_A230AAAAA00860.11 AA00
1286bjx_A_A230_A231AAAAA00910.10 AA00
1296bjx_A_A231_C232AAAAA08850.16 AA08
1306bjx_A_C232_A233AAAAA08780.22 AA08
1316bjx_A_A233_G234AAAAA03750.25 AA03
1326bjx_A_G234_A235AAwAA10660.27 AA10
1336bjx_A_A235_U236NANNANT00.54 OP04
1346bjx_A_U236_C237NANNANT01.05 OP13
1356bjx_A_C237_U238NANNANT01.80 OP30
1366bjx_A_U238_U239NANNANT01.36 OP01
1376bjx_A_U239_C240AAwAA06830.31 AA06
1386bjx_A_C240_U241AAAAA08900.13 AA08
1396bjx_A_U241_G242AAAAA00860.12 AA00
1406bjx_A_G242_U243AAAAA00840.16 AA00
1416bjx_A_U243_U244AAAAA08790.15 AA08
1426bjx_A_U244_G245AAAAA08840.13 AA08
1436bjx_A_G245_A246AAAAA00760.13 AA00
1446bjx_A_A246_U247AAAAA00870.17 AA00
1456bjx_A_U247_A248NANNANT00.58 IC02
1466bjx_A_A248_U249NANNANT01.37 BA17
1476bjx_A_U249_G250NANNANT01.07 AA12
1486bjx_A_G250_G251AAwAA01690.21 AA01
1496bjx_A_G251_A252AAAAA08880.15 AA08
1506bjx_A_A252_U253AAAAA00790.24 AA00
1516bjx_A_U253_G254OPNOP02610.39 OP02
1526bjx_A_G254_C255AAAAA00700.23 AA00
1536bjx_A_C255_A256AAAAA08760.31 AA08
1546bjx_A_A256_G257AAAAA08750.43 AA08
1556bjx_A_G257_U258AAuAA12420.34 AA12
1566bjx_A_U258_U259AAAAA00500.38 AA00
1576bjx_A_U259_C260AAAAA00530.22 AA00
1586bjx_B_G103_A104AAAAA00570.32 AA00
1596bjx_B_A104_A105A-BAB05890.17 AB05
1606bjx_B_A105_U106NANNANT00.75 OP17
1616bjx_B_U106_U107NANNANT01.06 OP13
1626bjx_B_U107_G108AAAAA00810.20 AA00
1636bjx_B_G108_C109AAwAA01860.14 AA01
1646bjx_B_C109_G110AAAAA08500.29 AA08
1656bjx_B_G110_G111AAAAA00850.14 AA00
1666bjx_B_G111_G112AAAAA08850.18 AA08
1676bjx_B_G112_A113AAAAA08810.30 AA08
1686bjx_B_A113_A114AAuAA13790.20 AA13
1696bjx_B_A114_A115AAAAA08940.20 AA08
1706bjx_B_A115_G116AAAAA00750.18 AA00
1716bjx_B_G116_G117AAAAA00870.12 AA00
1726bjx_B_G117_G118AAAAA00790.14 AA00
1736bjx_B_G118_G119AAwAA01730.29 AA01
1746bjx_B_G119_U120AAAAA08800.39 AA08
1756bjx_B_U120_C121AAAAA00530.31 AA00
1766bjx_B_C121_A122NANNANT00.81 IC07
1776bjx_B_A122_A123NANNANT00.82 ZZ02
1786bjx_B_A123_C124NANNANT00.76 BA16
1796bjx_B_C124_A125NANNANT00.81 OP07
1806bjx_B_A125_G126NANNANT01.00 OPS1
1816bjx_B_G126_C127AAAAA00780.23 AA00
1826bjx_B_C127_C128AAAAA00640.26 AA00
1836bjx_B_C128_G129AAAAA00870.14 AA00
1846bjx_B_G129_U130NANNANT00.32 AA03
1856bjx_B_U130_A131NANNANT01.60 OP04
1866bjx_B_A131_C132NANNANT01.84 OP01
1876bjx_B_C132_A133AAAAA00870.13 AA00
1886bjx_B_A133_G134AAAAA00740.10 AA00
1896bjx_B_G134_U135AAAAA00870.08 AA00
1906bjx_B_U135_A136AAAAA08910.18 AA08
1916bjx_B_A136_C137AAAAA00750.19 AA00
1926bjx_B_C137_C138A-BAB05800.31 AB05
1936bjx_B_C138_A139NANNANT01.42 OP16
1946bjx_B_A139_A140AAAAA08780.25 AA08
1956bjx_B_A140_G141AAAAA08590.38 AA08
1966bjx_B_G141_U142AAAAA00740.14 AA00
1976bjx_B_U142_C143AAAAA08910.13 AA08
1986bjx_B_C143_U144AAAAA00890.09 AA00
1996bjx_B_U144_C145AAAAA00790.14 AA00
2006bjx_B_C145_A146AAAAA00880.13 AA00
2016bjx_B_A146_G147AAAAA00650.27 AA00
2026bjx_B_G147_G148AAAAA00810.15 AA00
2036bjx_B_G148_G149AAAAA00780.15 AA00
2046bjx_B_G149_G150AAAAA08790.18 AA08
2056bjx_B_G150_A151OPNOP03740.12 OP03
2066bjx_B_A151_A152AAAAA08850.30 AA08
2076bjx_B_A152_A153AAAAA08710.27 AA08
2086bjx_B_A153_C154NANNANT00.83 AA04
2096bjx_B_C154_U155AAAAA00870.22 AA00
2106bjx_B_U155_U156AAAAA00790.15 AA00
2116bjx_B_U156_U157AAAAA00830.13 AA00
2126bjx_B_U157_G158AAAAA00830.14 AA00
2136bjx_B_G158_A159AAAAA00940.10 AA00
2146bjx_B_A159_G160AAAAA08870.18 AA08
2156bjx_B_G160_A161AAAAA00760.20 AA00
2166bjx_B_A161_U162AAAAA00690.27 AA00
2176bjx_B_U162_G163AAAAA08650.39 AA08
2186bjx_B_G163_G164A-BAB05600.36 AB05
2196bjx_B_G164_C165OPNOP12260.46 OP12
2206bjx_B_C165_C166AAAAA08860.12 AA08
2216bjx_B_C166_U167NANNANT00.29 ZZ01
2226bjx_B_U167_U168NANNANT00.62 OP21
2236bjx_B_U168_G169NANNANT00.95 OP21
2246bjx_B_G169_C170AAAAA00370.30 AA00
2256bjx_B_C170_A171NANNANT00.61 AB05
2266bjx_B_A171_A172NANNANT00.51 OP26
2276bjx_B_A172_A173AAAAA00470.30 AA00
2286bjx_B_A173_G174AAAAA08870.29 AA08
2296bjx_B_G174_G175AAAAA08960.20 AA08
2306bjx_B_G175_G176AAAAA00740.25 AA00
2316bjx_B_G176_U177AAAAA00640.26 AA00
2326bjx_B_U177_A178NANNANT02.52 OP18
2336bjx_B_A178_U179NANNANT00.67 OP21
2346bjx_B_U179_G180NANNANT00.22 OP11
2356bjx_B_G180_G181AAwAA01730.18 AA01
2366bjx_B_G181_U182A-BAB05680.28 AB05
2376bjx_B_U182_A183NANNANT00.93 OP11
2386bjx_B_A183_A184AAAAA09340.27 AA09
2396bjx_B_A184_U185NANNANT01.54 OP21
2406bjx_B_U185_A186NANNANT01.13 OP16
2416bjx_B_A186_A187NANNANT00.80 IC07
2426bjx_B_A187_G188NANNANT01.49 OPS1
2436bjx_B_G188_C189NANNANT01.54 OP16
2446bjx_B_C189_U190AAAAA00780.12 AA00
2456bjx_B_U190_G191AAAAA08870.14 AA08
2466bjx_B_G191_A192AAAAA00700.23 AA00
2476bjx_B_A192_C193AAAAA08810.16 AA08
2486bjx_B_C193_G194AAAAA00780.11 AA00
2496bjx_B_G194_G195AAAAA00740.27 AA00
2506bjx_B_G195_A196AAAAA00730.18 AA00
2516bjx_B_A196_C197AAAAA00790.16 AA00
2526bjx_B_C197_A198NANNANT00.50 AA07
2536bjx_B_A198_U199NANNANT02.03 OP06
2546bjx_B_U199_G200NANNANT00.71 OP11
2556bjx_B_G200_G201AAAAA00610.18 AA00
2566bjx_B_G201_U202AAAAA00760.27 AA00
2576bjx_B_U202_C203AAAAA08790.23 AA08
2586bjx_B_C203_C204AAAAA00880.14 AA00
2596bjx_B_C204_U205AAAAA00900.23 AA00
2606bjx_B_U205_A206AAAAA08640.45 AA08
2616bjx_B_A206_A207AAuAA12380.54 AA12
2626bjx_B_A207_C208AAAAA08240.65 AA08
2636bjx_B_C208_C209A-BAB05560.32 AB05
2646bjx_B_C209_A210NANNANT00.79 OP13
2656bjx_B_A210_C211NANNANT01.08 OP11
2666bjx_B_C211_G212AAAAA00150.32 AA00
2676bjx_B_G212_C213AAAAA00480.28 AA00
2686bjx_B_C213_A214AAAAA00810.24 AA00
2696bjx_B_A214_G215AAAAA00740.16 AA00
2706bjx_B_G215_C216AAAAA00860.15 AA00
2716bjx_B_C216_C217AAAAA00810.18 AA00
2726bjx_B_C217_A218A-BAB05860.32 AB05
2736bjx_B_A218_A219OPNOP26750.36 OP26
2746bjx_B_A219_G220AAAAA08840.33 AA08
2756bjx_B_G220_U221AAAAA00850.18 AA00
2766bjx_B_U221_C222AAAAA08950.18 AA08
2776bjx_B_C222_C223AAAAA00870.18 AA00
2786bjx_B_C223_U224AAAAA00810.22 AA00
2796bjx_B_U224_A225A-BAB05730.25 AB05
2806bjx_B_A225_A226OPNOP26650.53 OP26
2816bjx_B_A226_G227AAAAA08560.47 AA08
2826bjx_B_G227_U228AAAAA00900.15 AA00
2836bjx_B_U228_C229AAAAA00880.13 AA00
2846bjx_B_C229_A230AAAAA00930.14 AA00
2856bjx_B_A230_A231AAAAA00950.09 AA00
2866bjx_B_A231_C232AAAAA00830.14 AA00
2876bjx_B_C232_A233AAAAA00720.14 AA00
2886bjx_B_A233_G234AAAAA03850.20 AA03
2896bjx_B_G234_A235AAwAA10720.23 AA10
2906bjx_B_A235_U236NANNANT00.52 OP04
2916bjx_B_U236_C237NANNANT01.63 OP03
2926bjx_B_C237_U238NANNANT01.88 OP30
2936bjx_B_U238_U239NANNANT01.92 OP16
2946bjx_B_U239_C240AAwAA06800.32 AA06
2956bjx_B_C240_U241AAAAA08790.15 AA08
2966bjx_B_U241_G242AAAAA00800.09 AA00
2976bjx_B_G242_U243AAAAA00800.14 AA00
2986bjx_B_U243_U244AAAAA00740.18 AA00
2996bjx_B_U244_G245AAAAA08700.12 AA08
3006bjx_B_G245_A246AAAAA08780.16 AA08
3016bjx_B_A246_U247AAAAA00840.20 AA00
3026bjx_B_U247_A248ICLIC02390.48 IC02
3036bjx_B_A248_U249NANNANT01.40 BA17
3046bjx_B_U249_G250NANNANT01.09 AA04
3056bjx_B_G250_G251AAwAA01760.17 AA01
3066bjx_B_G251_A252AAAAA08880.14 AA08
3076bjx_B_A252_U253AAAAA00750.24 AA00
3086bjx_B_U253_G254OPNOP02630.38 OP02
3096bjx_B_G254_C255AAAAA00820.19 AA00
3106bjx_B_C255_A256AAAAA08770.38 AA08
3116bjx_B_A256_G257AAAAA08890.32 AA08
3126bjx_B_G257_U258AAwAA0190.61 AA01
3136bjx_B_U258_U259AAAAA08670.35 AA08
3146bjx_B_U259_C260AAAAA00300.34 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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