DNATCO v4.1: results

Crystal structure of a F. nucleatum FMN riboswitch bound to WG-3

Results of the assignment of 107 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	6bfb_X_G1_G2	AAA	AA04	80	0.32	AA04
002	6bfb_X_G2_A3	AAA	AA00	83	0.12	AA00
003	6bfb_X_A3_U4	AAA	AA00	74	0.23	AA00
004	6bfb_X_U4_C5	NAN	NANT	0	0.42	AA06
005	6bfb_X_C5_U6	AAA	AA08	80	0.13	AA08
006	6bfb_X_U6_U7	AAA	AA00	76	0.21	AA00
007	6bfb_X_U7_C8	AAA	AA08	79	0.18	AA08
008	6bfb_X_C8_G9	AAA	AA00	81	0.31	AA00
009	6bfb_X_G9_G10	NAN	NANT	0	1.10	OP28
010	6bfb_X_G10_G11	B-A	BA08	70	0.39	BA08
011	6bfb_X_G11_G12	AAA	AA02	70	0.15	AA02
012	6bfb_X_G12_C13	NAN	NANT	0	0.43	IC07
013	6bfb_X_C13_A14	NAN	NANT	0	0.49	OP07
014	6bfb_X_A14_G15	AAA	AA00	12	0.51	AA00
015	6bfb_X_G15_G16	AAw	AA10	58	0.17	AA10
016	6bfb_X_G16_G17	AAA	AA00	29	0.33	AA00
017	6bfb_X_G17_U18	AAA	AA00	64	0.19	AA00
018	6bfb_X_U18_G19	AAA	AA08	81	0.27	AA08
019	6bfb_X_G19_A20	OPN	OP04	58	0.11	OP04
020	6bfb_X_A20_A21	AAA	AA00	65	0.30	AA00
021	6bfb_X_A21_A22	NAN	NANT	0	0.54	AB04
022	6bfb_X_A22_U23	NAN	NANT	0	0.63	OP29
023	6bfb_X_U23_U24	OPN	OP20	45	0.45	OP20
024	6bfb_X_U24_C25	OPN	OP12	68	0.25	OP12
025	6bfb_X_C25_C26	AAA	AA00	55	0.33	AA00
026	6bfb_X_C26_C27	AAA	AA04	80	0.33	AA04
027	6bfb_X_C27_G28	AAA	AA04	52	0.45	AA04
028	6bfb_X_G28_A29	AAA	AA00	78	0.28	AA00
029	6bfb_X_A29_C30	AAA	AA00	61	0.28	AA00
030	6bfb_X_C30_C31	AAA	AA00	87	0.22	AA00
031	6bfb_X_C31_G32	A-B	AB05	87	0.14	AB05
032	6bfb_X_G32_G33	NAN	NANT	0	0.96	OP16
033	6bfb_X_G33_U34	AAA	AA00	60	0.24	AA00
034	6bfb_X_U34_G35	AAA	AA04	87	0.16	AA04
035	6bfb_X_G35_G36	AAA	AA00	74	0.24	AA00
036	6bfb_X_G36_U37	AAA	AA08	90	0.19	AA08
037	6bfb_X_U37_A38	NAN	NANT	0	1.62	OP09
038	6bfb_X_A38_U39	NAN	NANT	0	0.52	OP26
039	6bfb_X_U39_A40	NAN	NANT	0	0.41	OP20
040	6bfb_X_A40_G41	OPN	OP14	97	0.20	OP14
041	6bfb_X_G41_U42	A-B	AB05	36	0.41	AB05
042	6bfb_X_U42_C43	NAN	NANT	0	1.55	IC03
043	6bfb_X_C43_C44	AAA	AA00	42	0.23	AA00
044	6bfb_X_C44_A45	AAA	AA00	88	0.23	AA00
045	6bfb_X_A45_C46	AAw	AA10	88	0.14	AA10
046	6bfb_X_C46_G47	AAA	AA00	63	0.32	AA00
047	6bfb_X_G47_A48	AAA	AA00	14	0.47	AA00
048	6bfb_X_A48_A49	AAA	AA00	35	0.41	AA00
049	6bfb_X_A49_A50	AAA	AA08	82	0.22	AA08
050	6bfb_X_A50_G51	AAA	AA00	83	0.12	AA00
051	6bfb_X_G51_C52	AAA	AA00	76	0.17	AA00
052	6bfb_X_C52_U53	AAA	AA00	89	0.19	AA00
053	6bfb_Y_G57_C58	AAA	AA00	74	0.15	AA00
054	6bfb_Y_C58_U59	AAA	AA00	89	0.22	AA00
055	6bfb_Y_U59_U60	AAA	AA00	88	0.16	AA00
056	6bfb_Y_U60_U61	AAA	AA00	85	0.16	AA00
057	6bfb_Y_U61_G62	NAN	NANT	0	0.65	IC01
058	6bfb_Y_G62_A63	NAN	NANT	0	0.49	BA08
059	6bfb_Y_A63_U64	NAN	NANT	0	1.55	IC02
060	6bfb_Y_U64_U65	B-A	BA16	78	0.14	BA16
061	6bfb_Y_U65_U66	AAA	AA00	90	0.12	AA00
062	6bfb_Y_U66_G67	AAA	AA00	80	0.12	AA00
063	6bfb_Y_G67_G68	AAA	AA00	89	0.20	AA00
064	6bfb_Y_G68_U69	AAA	AA00	90	0.13	AA00
065	6bfb_Y_U69_G70	AAA	AA00	85	0.20	AA00
066	6bfb_Y_G70_A71	OPN	OP04	89	0.12	OP04
067	6bfb_Y_A71_A72	AAA	AA00	66	0.30	AA00
068	6bfb_Y_A72_A73	NAN	NANT	0	0.53	AB04
069	6bfb_Y_A73_U74	NAN	NANT	0	1.67	OP09
070	6bfb_Y_U74_U75	NAN	NANT	0	0.48	OP20
071	6bfb_Y_U75_C76	NAN	NANT	0	0.41	OP12
072	6bfb_Y_C76_C77	AAA	AA00	46	0.33	AA00
073	6bfb_Y_C77_A78	AAA	AA00	76	0.18	AA00
074	6bfb_Y_A78_A79	AAA	AA00	95	0.12	AA00
075	6bfb_Y_A79_A80	AAA	AA00	85	0.15	AA00
076	6bfb_Y_A80_A81	NAN	NANT	0	0.44	AA06
077	6bfb_Y_A81_C82	AAA	AA00	68	0.32	AA00
078	6bfb_Y_C82_C83	AAA	AA00	84	0.21	AA00
079	6bfb_Y_C83_G84	AAA	AA09	63	0.29	AA09
080	6bfb_Y_G84_A85	NAN	NANT	0	0.61	OP02
081	6bfb_Y_A85_C86	AAA	AA00	76	0.22	AA00
082	6bfb_Y_C86_A87	AAA	AA08	83	0.10	AA08
083	6bfb_Y_A87_G88	AAA	AA00	70	0.24	AA00
084	6bfb_Y_G88_U89	AAA	AA00	30	0.35	AA00
085	6bfb_Y_U89_A90	NAN	NANT	0	1.57	OP17
086	6bfb_Y_A90_G91	NAN	NANT	0	0.56	OP26
087	6bfb_Y_G91_A92	NAN	NANT	0	0.40	OP20
088	6bfb_Y_A92_G93	OPN	OP14	73	0.24	OP14
089	6bfb_Y_G93_U94	NAN	NANT	0	0.30	AB05
090	6bfb_Y_U94_C95	OPN	OP12	73	0.34	OP12
091	6bfb_Y_C95_U96	AAA	AA00	72	0.22	AA00
092	6bfb_Y_U96_G97	AAA	AA00	69	0.18	AA00
093	6bfb_Y_G97_G98	AAA	AA00	66	0.23	AA00
094	6bfb_Y_G98_A99	ZZZ	ZZ01	83	0.21	ZZ01
095	6bfb_Y_A99_U100	OPN	OP21	46	0.55	OP21
096	6bfb_Y_U100_G101	OPN	OP11	87	0.15	OP11
097	6bfb_Y_G101_A102	AAA	AA08	80	0.25	AA08
098	6bfb_Y_A102_G103	AAA	AA00	75	0.25	AA00
099	6bfb_Y_G103_A104	NAN	NANT	0	0.51	AA07
100	6bfb_Y_A104_G105	NAN	NANT	0	0.95	AA10
101	6bfb_Y_G105_A106	AAA	AA00	88	0.11	AA00
102	6bfb_Y_A106_A107	AAA	AA00	83	0.13	AA00
103	6bfb_Y_A107_G108	AAA	AA00	88	0.13	AA00
104	6bfb_Y_G108_A109	AAA	AA00	91	0.15	AA00
105	6bfb_Y_A109_U110	AAA	AA00	88	0.19	AA00
106	6bfb_Y_U110_U111	AAA	AA00	72	0.27	AA00
107	6bfb_Y_U111_C112	NAN	NANT	0	0.52	AA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

Z

N

Results of the assignment of 107 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible