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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
I-LtrI E184D bound to non-cognate C4 substrate (pre-cleavage complex)

Results of the assignment of 51 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016bct_B_DG2_DT3NANNANT00.72 BB02
026bct_B_DT3_DC4BBBBB00100.54 BB00
036bct_B_DC4_DT5BBBBB00150.41 BB00
046bct_B_DT5_DA6BBBBB01570.23 BB01
056bct_B_DA6_DA7BBBBB01660.28 BB01
066bct_B_DA7_DA8B12BB04510.16 BB04
076bct_B_DA8_DC9BBBBB00710.26 BB00
086bct_B_DC9_DG10BBBBB00660.28 BB00
096bct_B_DG10_DT11BBBBB00660.31 BB00
106bct_B_DT11_DC12B12BB04630.24 BB04
116bct_B_DC12_DG13BBBBB00690.32 BB00
126bct_B_DG13_DG14BB2BB07690.15 BB07
136bct_B_DG14_DT15BB2BB07570.35 BB07
146bct_B_DT15_DT16miBBB12830.20 BB12
156bct_B_DT16_DA17NANNANT00.87 BB13
166bct_B_DA17_DG18BBBBB01590.26 BB01
176bct_B_DG18_DG19B-ABA05360.38 BA05
186bct_B_DG19_DA20A-BAB01550.27 AB01
196bct_B_DA20_DG21BBBBB00910.14 BB00
206bct_B_DG21_DC22B12BB04640.27 BB04
216bct_B_DC22_DA23BBBBB00770.18 BB00
226bct_B_DA23_DT24BBBBB01450.17 BB01
236bct_B_DT24_DT25NANNANT00.32 BB00
246bct_B_DT25_DT26BBBBB01670.17 BB01
256bct_B_DT26_DG27NANNANT00.34 BB10
266bct_D_DC1_DA2BB2BB07510.18 BB07
276bct_D_DA2_DA3B-ABA08670.31 BA08
286bct_D_DA3_DA4BBBBB01800.16 BB01
296bct_D_DA4_DT5BBBBB01870.19 BB01
306bct_D_DT5_DG6BBBBB00490.29 BB00
316bct_D_DG6_DC7B-ABA05690.17 BA05
326bct_D_DC7_DT8BBBBB01460.22 BB01
336bct_D_DT8_DC9NANNANT00.45 BA08
346bct_D_DC9_DC10BBBBB00180.36 BB00
356bct_D_DC10_DT11BBBBB00390.42 BB00
366bct_D_DT11_DA12BBBBB00490.28 BB00
376bct_D_DA12_DA13BB2BB07900.12 BB07
386bct_D_DA13_DC14BB2BB07460.38 BB07
396bct_D_DC14_DC15miBBB12910.17 BB12
406bct_D_DC15_DG16NANNANT00.90 BB13
416bct_D_DG16_DA17BBBBB00200.27 BB00
426bct_D_DA17_DC18B-ABA05150.46 BA05
436bct_D_DC18_DG19AAwAA10730.35 AA10
446bct_D_DG19_DT20A-BAB05320.32 AB05
456bct_D_DT20_DT21BBBBB01440.23 BB01
466bct_D_DT21_DT22BBBBB01190.21 BB01
476bct_D_DT22_DA23BBBBB00160.35 BB00
486bct_D_DA23_DG24NANNANT00.57 BA09
496bct_D_DG24_DA25NANNANT00.55 AB02
506bct_D_DA25_DC26NANNANT00.58 BA13
516bct_D_DC26_DA27NANNANT01.46 BB1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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