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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
I-LtrI E184D bound to cognate substrate (pre-cleavage complex)

Results of the assignment of 198 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016bcn_B_DG1_DG2B12BB04350.27 BB04
0026bcn_B_DG2_DT3BBwBB02660.26 BB02
0036bcn_B_DT3_DC4B-ABA01170.37 BA01
0046bcn_B_DC4_DT5A-BAB01730.31 AB01
0056bcn_B_DT5_DA6BBBBB00860.13 BB00
0066bcn_B_DA6_DA7BBBBB00850.21 BB00
0076bcn_B_DA7_DA8BB2BB07710.18 BB07
0086bcn_B_DA8_DC9BBBBB01580.21 BB01
0096bcn_B_DC9_DG10BBBBB01450.23 BB01
0106bcn_B_DG10_DT11BBBBB00600.31 BB00
0116bcn_B_DT11_DC12BB2BB07690.32 BB07
0126bcn_B_DC12_DG13BBBBB00670.23 BB00
0136bcn_B_DG13_DT14BBBBB00780.20 BB00
0146bcn_B_DT14_DA15BB2BB07610.36 BB07
0156bcn_B_DA15_DT16miBBB12570.26 BB12
0166bcn_B_DT16_DA17NANNANT00.82 BB13
0176bcn_B_DA17_DG18B-ABA05480.16 BA05
0186bcn_B_DG18_DG19B-ABA05270.39 BA05
0196bcn_B_DG19_DA20A-BAB01470.30 AB01
0206bcn_B_DA20_DG21BBBBB00880.16 BB00
0216bcn_B_DG21_DC22BB2BB07660.31 BB07
0226bcn_B_DC22_DA23BBBBB00790.21 BB00
0236bcn_B_DA23_DT24BBBBB01810.15 BB01
0246bcn_B_DT24_DT25BBBBB01630.26 BB01
0256bcn_B_DT25_DT26BBBBB00660.12 BB00
0266bcn_D_DC1_DA2NANNANT00.46 AB02
0276bcn_D_DA2_DA3B-ABA17720.22 BA17
0286bcn_D_DA3_DA4BBBBB01780.16 BB01
0296bcn_D_DA4_DT5BBBBB00770.21 BB00
0306bcn_D_DT5_DG6BB2BB07680.26 BB07
0316bcn_D_DG6_DC7BBBBB01750.20 BB01
0326bcn_D_DC7_DT8BBBBB01740.21 BB01
0336bcn_D_DT8_DC9BBBBB00370.33 BB00
0346bcn_D_DC9_DC10BBBBB00310.36 BB00
0356bcn_D_DC10_DT11BBBBB00370.35 BB00
0366bcn_D_DT11_DA12BBBBB00790.15 BB00
0376bcn_D_DA12_DT13BB2BB07780.16 BB07
0386bcn_D_DT13_DA14NANNANT00.34 BB07
0396bcn_D_DA14_DC15miBBB12880.20 BB12
0406bcn_D_DC15_DG16NANNANT00.90 BB13
0416bcn_D_DG16_DA17BBBBB01800.29 BB01
0426bcn_D_DA17_DC18B-ABA08660.30 BA08
0436bcn_D_DC18_DG19NANNANT00.58 AA02
0446bcn_D_DG19_DT20BBBBB00230.37 BB00
0456bcn_D_DT20_DT21BBBBB00760.23 BB00
0466bcn_D_DT21_DT22BBBBB00720.18 BB00
0476bcn_D_DT22_DA23BBBBB00650.27 BB00
0486bcn_D_DA23_DG24BBBBB00760.29 BB00
0496bcn_E_DG1_DG2BB2BB07340.35 BB07
0506bcn_E_DG2_DT3BBwBB02620.22 BB02
0516bcn_E_DT3_DC4B-ABA01260.31 BA01
0526bcn_E_DC4_DT5A-BAB01730.32 AB01
0536bcn_E_DT5_DA6BBBBB00840.16 BB00
0546bcn_E_DA6_DA7BBBBB00870.20 BB00
0556bcn_E_DA7_DA8BB2BB07700.17 BB07
0566bcn_E_DA8_DC9BBBBB01580.20 BB01
0576bcn_E_DC9_DG10BBBBB01380.24 BB01
0586bcn_E_DG10_DT11BBBBB00650.31 BB00
0596bcn_E_DT11_DC12BB2BB07690.32 BB07
0606bcn_E_DC12_DG13BBBBB00680.23 BB00
0616bcn_E_DG13_DT14BBBBB00780.21 BB00
0626bcn_E_DT14_DA15BB2BB07610.34 BB07
0636bcn_E_DA15_DT16miBBB12640.22 BB12
0646bcn_E_DT16_DA17NANNANT00.84 BB13
0656bcn_E_DA17_DG18B-ABA05640.13 BA05
0666bcn_E_DG18_DG19B-ABA05310.39 BA05
0676bcn_E_DG19_DA20A-BAB01490.29 AB01
0686bcn_E_DA20_DG21BBBBB00880.17 BB00
0696bcn_E_DG21_DC22BB2BB07670.28 BB07
0706bcn_E_DC22_DA23BBBBB00790.19 BB00
0716bcn_E_DA23_DT24BBBBB01810.17 BB01
0726bcn_E_DT24_DT25BBBBB01620.27 BB01
0736bcn_E_DT25_DT26BBBBB00640.15 BB00
0746bcn_F_DC1_DA2NANNANT00.49 AB02
0756bcn_F_DA2_DA3B-ABA17750.22 BA17
0766bcn_F_DA3_DA4BBBBB01770.17 BB01
0776bcn_F_DA4_DT5BBBBB00800.20 BB00
0786bcn_F_DT5_DG6BB2BB07690.25 BB07
0796bcn_F_DG6_DC7BBBBB01760.21 BB01
0806bcn_F_DC7_DT8BBBBB01710.21 BB01
0816bcn_F_DT8_DC9BBBBB00370.34 BB00
0826bcn_F_DC9_DC10BBBBB00340.32 BB00
0836bcn_F_DC10_DT11BBBBB00380.33 BB00
0846bcn_F_DT11_DA12BBBBB00650.21 BB00
0856bcn_F_DA12_DT13BB2BB07570.27 BB07
0866bcn_F_DT13_DA14NANNANT00.38 BB07
0876bcn_F_DA14_DC15miBBB12840.22 BB12
0886bcn_F_DC15_DG16NANNANT00.88 BB13
0896bcn_F_DG16_DA17BBBBB01790.30 BB01
0906bcn_F_DA17_DC18B-ABA08630.31 BA08
0916bcn_F_DC18_DG19NANNANT00.57 AA02
0926bcn_F_DG19_DT20BBBBB00230.38 BB00
0936bcn_F_DT20_DT21BBBBB00780.22 BB00
0946bcn_F_DT21_DT22BBBBB00720.17 BB00
0956bcn_F_DT22_DA23BBBBB00630.30 BB00
0966bcn_F_DA23_DG24BBBBB00840.28 BB00
0976bcn_F_DG24_DA25BB2BB07350.35 BB07
0986bcn_F_DA25_DC26A-BAB03200.63 AB03
0996bcn_H_DG1_DG2NANNANT00.30 BA17
1006bcn_H_DG2_DT3BBwBB02670.22 BB02
1016bcn_H_DT3_DC4B-ABA01340.32 BA01
1026bcn_H_DC4_DT5A-BAB01710.30 AB01
1036bcn_H_DT5_DA6BBBBB00880.13 BB00
1046bcn_H_DA6_DA7BBBBB00860.20 BB00
1056bcn_H_DA7_DA8BB2BB07710.18 BB07
1066bcn_H_DA8_DC9BBBBB01580.23 BB01
1076bcn_H_DC9_DG10BBBBB01450.22 BB01
1086bcn_H_DG10_DT11BBBBB00630.28 BB00
1096bcn_H_DT11_DC12BB2BB07660.36 BB07
1106bcn_H_DC12_DG13BBBBB00440.24 BB00
1116bcn_H_DG13_DT14BBBBB00360.26 BB00
1126bcn_H_DT14_DA15BB2BB07370.39 BB07
1136bcn_H_DA15_DT16miBBB12550.27 BB12
1146bcn_H_DT16_DA17NANNANT00.83 BB13
1156bcn_H_DA17_DG18B-ABA05430.15 BA05
1166bcn_H_DG18_DG19B-ABA05260.39 BA05
1176bcn_H_DG19_DA20A-BAB01470.30 AB01
1186bcn_H_DA20_DG21BBBBB00880.16 BB00
1196bcn_H_DG21_DC22BB2BB07660.33 BB07
1206bcn_H_DC22_DA23BBBBB00790.18 BB00
1216bcn_H_DA23_DT24BBBBB01820.16 BB01
1226bcn_H_DT24_DT25BBBBB01630.26 BB01
1236bcn_H_DT25_DT26BBBBB00660.15 BB00
1246bcn_I_DC1_DA2NANNANT00.56 BB08
1256bcn_I_DA2_DA3B-ABA17570.39 BA17
1266bcn_I_DA3_DA4BBBBB01820.20 BB01
1276bcn_I_DA4_DT5BBBBB00820.20 BB00
1286bcn_I_DT5_DG6BB2BB07740.27 BB07
1296bcn_I_DG6_DC7BBBBB01770.22 BB01
1306bcn_I_DC7_DT8BBBBB01750.20 BB01
1316bcn_I_DT8_DC9BBBBB00360.34 BB00
1326bcn_I_DC9_DC10BBBBB01300.26 BB01
1336bcn_I_DC10_DT11BBBBB00350.36 BB00
1346bcn_I_DT11_DA12BBBBB00820.15 BB00
1356bcn_I_DA12_DT13BB2BB07610.15 BB07
1366bcn_I_DT13_DA14BB2BB07570.30 BB07
1376bcn_I_DA14_DC15miBBB12900.11 BB12
1386bcn_I_DC15_DG16NANNANT00.89 BB13
1396bcn_I_DG16_DA17BBBBB01810.30 BB01
1406bcn_I_DA17_DC18B-ABA08640.30 BA08
1416bcn_I_DC18_DG19NANNANT00.56 AA02
1426bcn_I_DG19_DT20BBBBB00210.39 BB00
1436bcn_I_DT20_DT21BBBBB00800.22 BB00
1446bcn_I_DT21_DT22BBBBB00670.21 BB00
1456bcn_I_DT22_DA23BBBBB00500.47 BB00
1466bcn_I_DA23_DG24NANNANT00.56 AB02
1476bcn_I_DG24_DA25B12BB04230.34 BB04
1486bcn_I_DA25_DC26BBBBB01170.28 BB01
1496bcn_K_DG1_DG2BB2BB07340.34 BB07
1506bcn_K_DG2_DT3BBwBB02620.28 BB02
1516bcn_K_DT3_DC4B-ABA01270.34 BA01
1526bcn_K_DC4_DT5A-BAB01660.32 AB01
1536bcn_K_DT5_DA6BBBBB00890.12 BB00
1546bcn_K_DA6_DA7BBBBB00870.21 BB00
1556bcn_K_DA7_DA8BB2BB07730.17 BB07
1566bcn_K_DA8_DC9BBBBB01580.23 BB01
1576bcn_K_DC9_DG10BBBBB01480.23 BB01
1586bcn_K_DG10_DT11BBBBB00640.30 BB00
1596bcn_K_DT11_DC12BB2BB07700.32 BB07
1606bcn_K_DC12_DG13BBBBB00690.22 BB00
1616bcn_K_DG13_DT14BBBBB00770.20 BB00
1626bcn_K_DT14_DA15BB2BB07650.32 BB07
1636bcn_K_DA15_DT16miBBB12560.26 BB12
1646bcn_K_DT16_DA17NANNANT00.82 BB13
1656bcn_K_DA17_DG18B-ABA05430.16 BA05
1666bcn_K_DG18_DG19B-ABA05280.39 BA05
1676bcn_K_DG19_DA20A-BAB01470.30 AB01
1686bcn_K_DA20_DG21BBBBB00880.16 BB00
1696bcn_K_DG21_DC22BB2BB07650.31 BB07
1706bcn_K_DC22_DA23BBBBB00750.20 BB00
1716bcn_K_DA23_DT24BBBBB01820.16 BB01
1726bcn_K_DT24_DT25BBBBB01620.25 BB01
1736bcn_K_DT25_DT26BBBBB00660.14 BB00
1746bcn_L_DC1_DA2NANNANT00.48 BB07
1756bcn_L_DA2_DA3B-ABA17740.22 BA17
1766bcn_L_DA3_DA4BBBBB01810.17 BB01
1776bcn_L_DA4_DT5BBBBB00820.20 BB00
1786bcn_L_DT5_DG6BB2BB07740.27 BB07
1796bcn_L_DG6_DC7BBBBB01780.21 BB01
1806bcn_L_DC7_DT8BBBBB01700.21 BB01
1816bcn_L_DT8_DC9BBBBB00360.33 BB00
1826bcn_L_DC9_DC10BBBBB00340.33 BB00
1836bcn_L_DC10_DT11BBBBB00370.36 BB00
1846bcn_L_DT11_DA12BBBBB00790.16 BB00
1856bcn_L_DA12_DT13BB2BB07760.15 BB07
1866bcn_L_DT13_DA14NANNANT00.39 BB07
1876bcn_L_DA14_DC15miBBB12880.19 BB12
1886bcn_L_DC15_DG16NANNANT00.88 BB13
1896bcn_L_DG16_DA17BBBBB01810.28 BB01
1906bcn_L_DA17_DC18B-ABA08690.29 BA08
1916bcn_L_DC18_DG19NANNANT00.56 AA02
1926bcn_L_DG19_DT20BBBBB00230.36 BB00
1936bcn_L_DT20_DT21BBBBB00780.24 BB00
1946bcn_L_DT21_DT22BBBBB00720.18 BB00
1956bcn_L_DT22_DA23BBBBB00610.31 BB00
1966bcn_L_DA23_DG24BBBBB00850.32 BB00
1976bcn_L_DG24_DA25BB2BB07390.30 BB07
1986bcn_L_DA25_DC26BBBBB01130.33 BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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