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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Wild-type I-LtrI bound to non-cognate C4 substrate (pre-cleavage complex)

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016bci_B_DG1_DG2miBBB15550.30 BB15
026bci_B_DG2_DT3B-ABA05660.32 BA05
036bci_B_DT3_DC4BBBBB01700.24 BB01
046bci_B_DC4_DT5BBBBB00190.34 BB00
056bci_B_DT5_DA6BBBBB01320.21 BB01
066bci_B_DA6_DA7BBBBB00950.17 BB00
076bci_B_DA7_DA8BB2BB07650.15 BB07
086bci_B_DA8_DC9BBBBB00620.25 BB00
096bci_B_DC9_DG10BBBBB00570.31 BB00
106bci_B_DG10_DT11BBBBB00710.24 BB00
116bci_B_DT11_DC12B12BB04740.18 BB04
126bci_B_DC12_DG13BBBBB00690.31 BB00
136bci_B_DG13_DG14BB2BB07780.18 BB07
146bci_B_DG14_DT15BB2BB07540.38 BB07
156bci_B_DT15_DT16miBBB12690.27 BB12
166bci_B_DT16_DA17NANNANT00.82 BB13
176bci_B_DA17_DG18BBBBB01390.31 BB01
186bci_B_DG18_DG19B-ABA05380.39 BA05
196bci_B_DG19_DA20A-BAB01490.29 AB01
206bci_B_DA20_DG21BBBBB00830.17 BB00
216bci_B_DG21_DC22B12BB04780.24 BB04
226bci_B_DC22_DA23BBBBB00860.15 BB00
236bci_B_DA23_DT24BBBBB01540.16 BB01
246bci_B_DT24_DT25BBBBB01150.28 BB01
256bci_B_DT25_DT26BBBBB00750.18 BB00
266bci_B_DT26_DG27NANNANT00.63 BB10
276bci_D_DC1_DA2NANNANT00.43 BB16
286bci_D_DA2_DA3NANNANT00.32 BA08
296bci_D_DA3_DA4BBBBB01790.17 BB01
306bci_D_DA4_DT5B-ABA05890.28 BA05
316bci_D_DT5_DG6BBBBB00380.28 BB00
326bci_D_DG6_DC7BBBBB01710.22 BB01
336bci_D_DC7_DT8BBBBB00330.29 BB00
346bci_D_DT8_DC9BBBBB00100.32 BB00
356bci_D_DC9_DC10BBBBB00250.36 BB00
366bci_D_DC10_DT11BBBBB00530.32 BB00
376bci_D_DT11_DA12BBBBB00760.24 BB00
386bci_D_DA12_DA13BB2BB07890.17 BB07
396bci_D_DA13_DC14BB2BB07300.33 BB07
406bci_D_DC14_DC15miBBB12860.23 BB12
416bci_D_DC15_DG16NANNANT00.87 BB13
426bci_D_DG16_DA17BBBBB00640.29 BB00
436bci_D_DA17_DC18B-ABA01390.24 BA01
446bci_D_DC18_DG19AAAAA00160.44 AA00
456bci_D_DG19_DT20A-BAB01440.34 AB01
466bci_D_DT20_DT21BBBBB00620.24 BB00
476bci_D_DT21_DT22BBBBB01560.17 BB01
486bci_D_DT22_DA23NANNANT00.49 BA08
496bci_D_DA23_DG24BBBBB00780.26 BB00
506bci_D_DG24_DA25NANNANT00.62 BA16
516bci_D_DA25_DC26NANNANT00.59 AA01
526bci_D_DC26_DC27NANNANT00.61 AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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