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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
I-LtrI E29D bound to cognate substrate (nicked complex)

Results of the assignment of 196 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0016bch_B_DG1_DG2BBBBB00790.19 BB00
0026bch_B_DG2_DT3BBBBB01780.17 BB01
0036bch_B_DT3_DC4B-ABA05400.27 BA05
0046bch_B_DC4_DT5A-BAB01720.27 AB01
0056bch_B_DT5_DA6BBBBB00850.15 BB00
0066bch_B_DA6_DA7BBBBB00880.20 BB00
0076bch_B_DA7_DA8BB2BB07760.17 BB07
0086bch_B_DA8_DC9BBBBB01580.21 BB01
0096bch_B_DC9_DG10BBBBB01450.24 BB01
0106bch_B_DG10_DT11BBBBB00660.29 BB00
0116bch_B_DT11_DC12BB2BB07680.34 BB07
0126bch_B_DC12_DG13BBBBB00510.37 BB00
0136bch_B_DG13_DT14BBBBB00430.47 BB00
0146bch_B_DT14_DA15BB2BB07110.50 BB07
0156bch_C_DC1_DA2A-BAB02470.51 AB02
0166bch_C_DA2_DA3BB2BB07190.28 BB07
0176bch_C_DA3_DA4BBBBB01830.15 BB01
0186bch_C_DA4_DT5BBBBB00820.22 BB00
0196bch_C_DT5_DG6BB2BB07730.28 BB07
0206bch_C_DG6_DC7B-ABA05780.20 BA05
0216bch_C_DC7_DT8BBBBB01640.24 BB01
0226bch_C_DT8_DC9BBBBB00370.33 BB00
0236bch_C_DC9_DC10BBBBB00340.32 BB00
0246bch_C_DC10_DT11BBBBB00400.33 BB00
0256bch_C_DT11_DA12BBBBB00790.17 BB00
0266bch_C_DA12_DT13BB2BB07890.15 BB07
0276bch_C_DT13_DA14NANNANT00.69 BB08
0286bch_C_DA14_DC15NANNANT00.67 BB02
0296bch_C_DC15_DG16NANNANT00.77 BB13
0306bch_C_DG16_DA17BBBBB01800.30 BB01
0316bch_C_DA17_DC18B-ABA08650.30 BA08
0326bch_C_DC18_DG19NANNANT00.60 AA02
0336bch_C_DG19_DT20BBBBB00250.35 BB00
0346bch_C_DT20_DT21BBBBB00800.23 BB00
0356bch_C_DT21_DT22BBBBB00710.19 BB00
0366bch_C_DT22_DA23BBBBB00580.36 BB00
0376bch_C_DA23_DG24BBBBB00780.28 BB00
0386bch_C_DG24_DA25BB2BB07490.31 BB07
0396bch_C_DA25_DC26BBBBB01350.26 BB01
0406bch_X_DT16_DA17NANNANT01.01 AA10
0416bch_X_DA17_DG18AAAAA02260.61 AA02
0426bch_X_DG18_DG19B-ABA05210.40 BA05
0436bch_X_DG19_DA20A-BAB01480.28 AB01
0446bch_X_DA20_DG21BBBBB00880.16 BB00
0456bch_X_DG21_DC22BB2BB07650.33 BB07
0466bch_X_DC22_DA23BBBBB00780.19 BB00
0476bch_X_DA23_DT24BBBBB01780.18 BB01
0486bch_X_DT24_DT25BBBBB01650.26 BB01
0496bch_X_DT25_DT26BBBBB00700.17 BB00
0506bch_E_DG1_DG2BBBBB00780.19 BB00
0516bch_E_DG2_DT3BBBBB01750.18 BB01
0526bch_E_DT3_DC4B-ABA05370.27 BA05
0536bch_E_DC4_DT5A-BAB01740.27 AB01
0546bch_E_DT5_DA6BBBBB00860.14 BB00
0556bch_E_DA6_DA7BBBBB00880.20 BB00
0566bch_E_DA7_DA8BB2BB07780.16 BB07
0576bch_E_DA8_DC9BBBBB01580.21 BB01
0586bch_E_DC9_DG10BBBBB01460.23 BB01
0596bch_E_DG10_DT11BBBBB00640.29 BB00
0606bch_E_DT11_DC12BB2BB07680.35 BB07
0616bch_E_DC12_DG13BBBBB00520.36 BB00
0626bch_E_DG13_DT14BBBBB00710.34 BB00
0636bch_E_DT14_DA15BB2BB07370.43 BB07
0646bch_F_DC1_DA2A-BAB02420.56 AB02
0656bch_F_DA2_DA3BB2BB07190.27 BB07
0666bch_F_DA3_DA4BBBBB01840.15 BB01
0676bch_F_DA4_DT5BBBBB00820.22 BB00
0686bch_F_DT5_DG6BB2BB07740.28 BB07
0696bch_F_DG6_DC7B-ABA05790.20 BA05
0706bch_F_DC7_DT8BBBBB01620.24 BB01
0716bch_F_DT8_DC9BBBBB00370.33 BB00
0726bch_F_DC9_DC10BBBBB00340.33 BB00
0736bch_F_DC10_DT11BBBBB00410.32 BB00
0746bch_F_DT11_DA12BBBBB00790.18 BB00
0756bch_F_DA12_DT13BB2BB07900.16 BB07
0766bch_F_DT13_DA14NANNANT00.68 BB08
0776bch_F_DA14_DC15NANNANT00.67 BB02
0786bch_F_DC15_DG16NANNANT00.77 BB13
0796bch_F_DG16_DA17BBBBB01800.30 BB01
0806bch_F_DA17_DC18B-ABA08650.30 BA08
0816bch_F_DC18_DG19NANNANT00.60 AA02
0826bch_F_DG19_DT20BBBBB00260.35 BB00
0836bch_F_DT20_DT21BBBBB00790.23 BB00
0846bch_F_DT21_DT22BBBBB00710.19 BB00
0856bch_F_DT22_DA23BBBBB00590.36 BB00
0866bch_F_DA23_DG24BBBBB00790.27 BB00
0876bch_F_DG24_DA25BB2BB07500.31 BB07
0886bch_F_DA25_DC26BBBBB01350.26 BB01
0896bch_G_DT16_DA17NANNANT01.02 ZZ01
0906bch_G_DA17_DG18B-ABA08680.45 BA08
0916bch_G_DG18_DG19B-ABA05280.41 BA05
0926bch_G_DG19_DA20A-BAB01480.28 AB01
0936bch_G_DA20_DG21BBBBB00860.17 BB00
0946bch_G_DG21_DC22BB2BB07660.32 BB07
0956bch_G_DC22_DA23BBBBB00790.19 BB00
0966bch_G_DA23_DT24BBBBB01780.18 BB01
0976bch_G_DT24_DT25BBBBB01640.26 BB01
0986bch_G_DT25_DT26BBBBB00700.16 BB00
0996bch_I_DG1_DG2BBBBB00780.20 BB00
1006bch_I_DG2_DT3BBBBB01780.17 BB01
1016bch_I_DT3_DC4B-ABA05420.26 BA05
1026bch_I_DC4_DT5A-BAB01710.28 AB01
1036bch_I_DT5_DA6BBBBB00860.15 BB00
1046bch_I_DA6_DA7BBBBB00880.19 BB00
1056bch_I_DA7_DA8BB2BB07770.16 BB07
1066bch_I_DA8_DC9BBBBB01580.21 BB01
1076bch_I_DC9_DG10BBBBB01470.23 BB01
1086bch_I_DG10_DT11BBBBB00650.30 BB00
1096bch_I_DT11_DC12BB2BB07690.34 BB07
1106bch_I_DC12_DG13BBBBB00580.32 BB00
1116bch_I_DG13_DT14BBBBB00720.31 BB00
1126bch_I_DT14_DA15BB2BB07230.54 BB07
1136bch_J_DC1_DA2A-BAB02400.59 AB02
1146bch_J_DA2_DA3BB2BB07190.27 BB07
1156bch_J_DA3_DA4BBBBB01850.15 BB01
1166bch_J_DA4_DT5BBBBB00820.21 BB00
1176bch_J_DT5_DG6BB2BB07730.27 BB07
1186bch_J_DG6_DC7B-ABA05730.21 BA05
1196bch_J_DC7_DT8BBBBB01630.24 BB01
1206bch_J_DT8_DC9BBBBB00370.33 BB00
1216bch_J_DC9_DC10BBBBB00340.32 BB00
1226bch_J_DC10_DT11BBBBB00410.32 BB00
1236bch_J_DT11_DA12BBBBB00790.18 BB00
1246bch_J_DA12_DT13BB2BB07910.17 BB07
1256bch_J_DT13_DA14NANNANT00.68 BB08
1266bch_J_DA14_DC15NANNANT00.71 BA16
1276bch_J_DC15_DG16NANNANT00.76 BB13
1286bch_J_DG16_DA17BBBBB00560.31 BB00
1296bch_J_DA17_DC18B-ABA08630.30 BA08
1306bch_J_DC18_DG19NANNANT00.59 AA02
1316bch_J_DG19_DT20BBBBB00250.35 BB00
1326bch_J_DT20_DT21BBBBB00780.23 BB00
1336bch_J_DT21_DT22BBBBB00710.19 BB00
1346bch_J_DT22_DA23BBBBB00590.36 BB00
1356bch_J_DA23_DG24BBBBB00800.28 BB00
1366bch_J_DG24_DA25BB2BB07490.30 BB07
1376bch_J_DA25_DC26BBBBB01350.26 BB01
1386bch_K_DT16_DA17NANNANT01.09 AA10
1396bch_K_DA17_DG18AAAAA02230.65 AA02
1406bch_K_DG18_DG19NANNANT00.65 AA00
1416bch_K_DG19_DA20A-BAB01480.28 AB01
1426bch_K_DA20_DG21BBBBB00880.17 BB00
1436bch_K_DG21_DC22BB2BB07650.32 BB07
1446bch_K_DC22_DA23BBBBB00790.19 BB00
1456bch_K_DA23_DT24BBBBB01770.18 BB01
1466bch_K_DT24_DT25BBBBB01640.26 BB01
1476bch_K_DT25_DT26BBBBB00700.17 BB00
1486bch_N_DG1_DG2BBBBB00780.20 BB00
1496bch_N_DG2_DT3BBBBB01780.17 BB01
1506bch_N_DT3_DC4B-ABA05380.27 BA05
1516bch_N_DC4_DT5A-BAB01730.28 AB01
1526bch_N_DT5_DA6BBBBB00860.14 BB00
1536bch_N_DA6_DA7BBBBB00890.19 BB00
1546bch_N_DA7_DA8BB2BB07780.17 BB07
1556bch_N_DA8_DC9BBBBB01580.22 BB01
1566bch_N_DC9_DG10BBBBB01480.23 BB01
1576bch_N_DG10_DT11BBBBB00650.30 BB00
1586bch_N_DT11_DC12BB2BB07680.35 BB07
1596bch_N_DC12_DG13BBBBB00580.32 BB00
1606bch_N_DG13_DT14BBBBB00760.25 BB00
1616bch_N_DT14_DA15BB2BB07480.44 BB07
1626bch_O_DC1_DA2A-BAB02380.58 AB02
1636bch_O_DA2_DA3BB2BB07190.27 BB07
1646bch_O_DA3_DA4BBBBB01840.14 BB01
1656bch_O_DA4_DT5BBBBB00830.21 BB00
1666bch_O_DT5_DG6BB2BB07730.27 BB07
1676bch_O_DG6_DC7B-ABA05780.21 BA05
1686bch_O_DC7_DT8BBBBB01590.24 BB01
1696bch_O_DT8_DC9BBBBB00370.33 BB00
1706bch_O_DC9_DC10BBBBB00340.32 BB00
1716bch_O_DC10_DT11BBBBB00410.32 BB00
1726bch_O_DT11_DA12BBBBB00790.17 BB00
1736bch_O_DA12_DT13BB2BB07890.14 BB07
1746bch_O_DT13_DA14NANNANT00.69 BB08
1756bch_O_DA14_DC15NANNANT00.53 BB05
1766bch_O_DC15_DG16NANNANT00.76 BB13
1776bch_O_DG16_DA17BBBBB01760.34 BB01
1786bch_O_DA17_DC18B-ABA08620.30 BA08
1796bch_O_DC18_DG19NANNANT00.59 AA02
1806bch_O_DG19_DT20BBBBB00250.35 BB00
1816bch_O_DT20_DT21BBBBB00800.23 BB00
1826bch_O_DT21_DT22BBBBB00710.20 BB00
1836bch_O_DT22_DA23BBBBB00580.36 BB00
1846bch_O_DA23_DG24BBBBB00790.28 BB00
1856bch_O_DG24_DA25BB2BB07490.30 BB07
1866bch_O_DA25_DC26BBBBB01350.26 BB01
1876bch_P_DT16_DA17NANNANT01.20 AA10
1886bch_P_DA17_DG18B-ABA05700.17 BA05
1896bch_P_DG18_DG19B-ABA05320.45 BA05
1906bch_P_DG19_DA20A-BAB01510.27 AB01
1916bch_P_DA20_DG21BBBBB00880.17 BB00
1926bch_P_DG21_DC22BB2BB07660.32 BB07
1936bch_P_DC22_DA23BBBBB00790.19 BB00
1946bch_P_DA23_DT24BBBBB01770.18 BB01
1956bch_P_DT24_DT25BBBBB01650.27 BB01
1966bch_P_DT25_DT26BBBBB00700.17 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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