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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Wild-type I-LtrI bound to cognate substrate (pre-cleavage complex)

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016bce_B_DG1_DG2BBBBB00810.16 BB00
026bce_B_DG2_DT3BBBBB01800.17 BB01
036bce_B_DT3_DC4B-ABA05330.28 BA05
046bce_B_DC4_DT5A-BAB01670.29 AB01
056bce_B_DT5_DA6BBBBB00870.13 BB00
066bce_B_DA6_DA7BBBBB00870.20 BB00
076bce_B_DA7_DA8BB2BB07770.16 BB07
086bce_B_DA8_DC9BBBBB01580.22 BB01
096bce_B_DC9_DG10BBBBB01560.22 BB01
106bce_B_DG10_DT11BBBBB00680.28 BB00
116bce_B_DT11_DC12BB2BB07690.34 BB07
126bce_B_DC12_DG13BBBBB00690.24 BB00
136bce_B_DG13_DT14BBBBB00770.20 BB00
146bce_B_DT14_DA15BB2BB07560.40 BB07
156bce_B_DA15_DT16miBBB12550.27 BB12
166bce_B_DT16_DA17NANNANT00.79 BB13
176bce_B_DA17_DG18B-ABA05460.18 BA05
186bce_B_DG18_DG19B-ABA05210.37 BA05
196bce_B_DG19_DA20A-BAB01450.30 AB01
206bce_B_DA20_DG21BBBBB00900.15 BB00
216bce_B_DG21_DC22BB2BB07650.30 BB07
226bce_B_DC22_DA23BBBBB00780.20 BB00
236bce_B_DA23_DT24BBBBB01800.17 BB01
246bce_B_DT24_DT25BBBBB01650.23 BB01
256bce_B_DT25_DT26BBBBB00690.17 BB00
266bce_B_DT26_DG27BBBBB00520.38 BB00
276bce_C_DC1_DA2A-BAB02490.44 AB02
286bce_C_DA2_DA3BB2BB07170.24 BB07
296bce_C_DA3_DA4BBBBB01860.17 BB01
306bce_C_DA4_DT5BBBBB00800.20 BB00
316bce_C_DT5_DG6BB2BB07740.27 BB07
326bce_C_DG6_DC7B-ABA05730.24 BA05
336bce_C_DC7_DT8BBBBB01710.22 BB01
346bce_C_DT8_DC9BBBBB00360.31 BB00
356bce_C_DC9_DC10BBBBB00330.35 BB00
366bce_C_DC10_DT11BBBBB00370.35 BB00
376bce_C_DT11_DA12BBBBB00800.13 BB00
386bce_C_DA12_DT13BB2BB07910.16 BB07
396bce_C_DT13_DA14NANNANT00.40 BB07
406bce_C_DA14_DC15miBBB12910.18 BB12
416bce_C_DC15_DG16NANNANT00.87 BB13
426bce_C_DG16_DA17BBBBB01790.28 BB01
436bce_C_DA17_DC18B-ABA08680.30 BA08
446bce_C_DC18_DG19NANNANT00.56 AA02
456bce_C_DG19_DT20BBBBB00230.36 BB00
466bce_C_DT20_DT21BBBBB00810.22 BB00
476bce_C_DT21_DT22BBBBB00710.20 BB00
486bce_C_DT22_DA23BBBBB00640.28 BB00
496bce_C_DA23_DG24BBBBB00770.29 BB00
506bce_C_DG24_DA25BB2BB07480.33 BB07
516bce_C_DA25_DC26BBBBB01350.26 BB01
526bce_C_DC26_DC27AAAAA02490.51 AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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