Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Zinc finger Domain of WT1(-KTS form) with M342R Mutation and 14+1mer Oligonucleotide with 3' Triplet TGG
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 55 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6b0r_E_DA1_DG2 | BBB | BB00 | 65 | 0.26 |
| 02 | 6b0r_E_DG2_DC3 | BBB | BB00 | 87 | 0.15 |
| 03 | 6b0r_E_DC3_DG4 | B12 | BB04 | 66 | 0.26 |
| 04 | 6b0r_E_DG4_DT5 | BBB | BB00 | 64 | 0.39 |
| 05 | 6b0r_E_DT5_DG6 | B-A | BA13 | 68 | 0.29 |
| 06 | 6b0r_E_DG6_DG7 | A-B | AB04 | 59 | 0.32 |
| 07 | 6b0r_E_DG7_DG8 | BBB | BB00 | 87 | 0.16 |
| 08 | 6b0r_E_DG8_DA9 | B-A | BA05 | 75 | 0.09 |
| 09 | 6b0r_E_DA9_DG10 | A-B | AB01 | 64 | 0.29 |
| 10 | 6b0r_E_DG10_DG11 | B-A | BA13 | 61 | 0.32 |
| 11 | 6b0r_E_DG11_DG12 | AAA | AA00 | 68 | 0.28 |
| 12 | 6b0r_E_DG12_DT13 | A-B | AB05 | 33 | 0.18 |
| 13 | 6b0r_E_DT13_DT14 | BBB | BB00 | 72 | 0.24 |
| 14 | 6b0r_E_DT14_DA15 | NAN | NANT | 0 | 0.71 |
| 15 | 6b0r_F_DT2_DA3 | NAN | NANT | 0 | 0.55 |
| 16 | 6b0r_F_DA3_DA4 | B12 | BB04 | 43 | 0.32 |
| 17 | 6b0r_F_DA4_DC5 | B-A | BA05 | 91 | 0.12 |
| 18 | 6b0r_F_DC5_DC6 | BBB | BB01 | 49 | 0.26 |
| 19 | 6b0r_F_DC6_DC7 | B-A | BA01 | 14 | 0.19 |
| 20 | 6b0r_F_DC7_DT8 | A-B | AB01 | 67 | 0.20 |
| 21 | 6b0r_F_DT8_DC9 | BBB | BB00 | 81 | 0.14 |
| 22 | 6b0r_F_DC9_DC10 | BBB | BB00 | 81 | 0.20 |
| 23 | 6b0r_F_DC10_DC11 | B-A | BA05 | 87 | 0.14 |
| 24 | 6b0r_F_DC11_DA12 | B-A | BA05 | 74 | 0.31 |
| 25 | 6b0r_F_DA12_DC13 | BBB | BB01 | 40 | 0.28 |
| 26 | 6b0r_F_DC13_DG14 | BBB | BB01 | 85 | 0.14 |
| 27 | 6b0r_F_DG14_DC15 | BBB | BB00 | 73 | 0.31 |
| 28 | 6b0r_B_DA1_DG2 | ICL | IC06 | 58 | 0.28 |
| 29 | 6b0r_B_DG2_DC3 | BBB | BB01 | 68 | 0.24 |
| 30 | 6b0r_B_DC3_DG4 | B12 | BB04 | 55 | 0.20 |
| 31 | 6b0r_B_DG4_DT5 | BBB | BB00 | 68 | 0.37 |
| 32 | 6b0r_B_DT5_DG6 | B-A | BA13 | 76 | 0.28 |
| 33 | 6b0r_B_DG6_DG7 | A-B | AB05 | 66 | 0.27 |
| 34 | 6b0r_B_DG7_DG8 | BBB | BB00 | 87 | 0.16 |
| 35 | 6b0r_B_DG8_DA9 | B-A | BA05 | 91 | 0.14 |
| 36 | 6b0r_B_DA9_DG10 | BBB | BB01 | 34 | 0.36 |
| 37 | 6b0r_B_DG10_DG11 | B-A | BA01 | 10 | 0.32 |
| 38 | 6b0r_B_DG11_DG12 | AAA | AA00 | 21 | 0.44 |
| 39 | 6b0r_B_DG12_DT13 | NAN | NANT | 0 | 0.32 |
| 40 | 6b0r_B_DT13_DT14 | BBB | BB01 | 40 | 0.20 |
| 41 | 6b0r_B_DT14_DA15 | BBB | BB00 | 57 | 0.33 |
| 42 | 6b0r_C_DT1_DT2 | BBB | BB01 | 89 | 0.13 |
| 43 | 6b0r_C_DT2_DA3 | BBB | BB00 | 32 | 0.39 |
| 44 | 6b0r_C_DA3_DA4 | B12 | BB04 | 20 | 0.29 |
| 45 | 6b0r_C_DA4_DC5 | B-A | BA05 | 58 | 0.12 |
| 46 | 6b0r_C_DC5_DC6 | BBB | BB01 | 60 | 0.21 |
| 47 | 6b0r_C_DC6_DC7 | BBB | BB01 | 86 | 0.11 |
| 48 | 6b0r_C_DC7_DT8 | BBB | BB00 | 70 | 0.17 |
| 49 | 6b0r_C_DT8_DC9 | B-A | BA13 | 78 | 0.18 |
| 50 | 6b0r_C_DC9_DC10 | A-B | AB05 | 76 | 0.15 |
| 51 | 6b0r_C_DC10_DC11 | BBB | BB01 | 75 | 0.23 |
| 52 | 6b0r_C_DC11_DA12 | B-A | BA05 | 81 | 0.22 |
| 53 | 6b0r_C_DA12_DC13 | BBB | BB01 | 32 | 0.30 |
| 54 | 6b0r_C_DC13_DG14 | BBB | BB00 | 77 | 0.18 |
| 55 | 6b0r_C_DG14_DC15 | BBB | BB00 | 76 | 0.29 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|