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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of Z-DNA with 6-fold Twinning_Z4A

Results of the assignment of 62 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
016aqw_A_DC101_DG102ZZZZZ1S740.12 ZZ1S
026aqw_A_DG102_DC103ZZZZZS2250.12 ZZS2
036aqw_A_DC103_DG104ZZZZZ1S850.17 ZZ1S
046aqw_A_DG104_DC.A105ZZZZZS2650.17 ZZS2
056aqw_A_DG104_DC.B105ZZZZZS1920.11 ZZS1
066aqw_A_DC.A105_DG106ZZZZZ2S640.14 ZZ2S
076aqw_A_DC.B105_DG106ZZZZZ2S640.14 ZZ2S
086aqw_B_DC207_DG.A208ZZZZZ1S800.13 ZZ1S
096aqw_B_DC207_DG.B208ZZZZZ1S640.15 ZZ1S
106aqw_B_DG.A208_DC.A209ZZZZZS1860.15 ZZS1
116aqw_B_DG.B208_DC.B209NANNANT00.18 ZZS2
126aqw_B_DC.A209_DG210ZZZZZ1S700.14 ZZ1S
136aqw_B_DC.B209_DG210ZZZZZ1S700.14 ZZ1S
146aqw_B_DG210_DC211ZZZZZS1890.13 ZZS1
156aqw_B_DC211_DG212ZZZZZ2S940.13 ZZ2S
166aqw_C_DC301_DG302ZZZZZ1S740.11 ZZ1S
176aqw_C_DG302_DC303ZZZZZS2170.13 ZZS2
186aqw_C_DC303_DG304ZZZZZ1S830.17 ZZ1S
196aqw_C_DG304_DC.A305ZZZZZS2670.18 ZZS2
206aqw_C_DG304_DC.B305ZZZZZS1940.11 ZZS1
216aqw_C_DC.A305_DG306ZZZZZ2S690.14 ZZ2S
226aqw_C_DC.B305_DG306ZZZZZ2S690.14 ZZ2S
236aqw_D_DC407_DG.A408ZZZZZ1S810.13 ZZ1S
246aqw_D_DC407_DG.B408ZZZZZ1S740.14 ZZ1S
256aqw_D_DG.A408_DC.A409ZZZZZS1850.16 ZZS1
266aqw_D_DG.B408_DC.B409NANNANT00.16 ZZS2
276aqw_D_DC.A409_DG410ZZZZZ1S670.15 ZZ1S
286aqw_D_DC.B409_DG410ZZZZZ1S670.15 ZZ1S
296aqw_D_DG410_DC411ZZZZZS1870.14 ZZS1
306aqw_D_DC411_DG412ZZZZZ2S900.12 ZZ2S
316aqw_E_DC501_DG502ZZZZZ1S810.10 ZZ1S
326aqw_E_DG502_DC.A503ZZZZZS1650.16 ZZS1
336aqw_E_DG502_DC.B503ZZZZZS2370.15 ZZS2
346aqw_E_DC.A503_DG504ZZZZZ1S640.19 ZZ1S
356aqw_E_DC.B503_DG504ZZZZZ1S640.19 ZZ1S
366aqw_E_DG504_DC505ZZZZZS1890.11 ZZS1
376aqw_E_DC505_DG506ZZZZZ2S890.12 ZZ2S
386aqw_F_DC607_DG.A608ZZZZZ1S320.10 ZZ1S
396aqw_F_DC607_DG.B608ZZZZZ1S400.09 ZZ1S
406aqw_F_DG.A608_DC.A609ZZZZZS1610.17 ZZS1
416aqw_F_DG.B608_DC.B609NANNANT00.13 ZZS2
426aqw_F_DC.A609_DG610ZZZZZ1S670.17 ZZ1S
436aqw_F_DC.B609_DG610ZZZZZ1S670.17 ZZ1S
446aqw_F_DG610_DC611ZZZZZS1770.17 ZZS1
456aqw_F_DC611_DG612ZZZZZ2S780.17 ZZ2S
466aqw_G_DC701_DG702ZZZZZ1S830.10 ZZ1S
476aqw_G_DG702_DC.A703ZZZZZS1580.16 ZZS1
486aqw_G_DG702_DC.B703ZZZZZS2130.16 ZZS2
496aqw_G_DC.A703_DG704ZZZZZ1S650.19 ZZ1S
506aqw_G_DC.B703_DG704ZZZZZ1S650.19 ZZ1S
516aqw_G_DG704_DC705ZZZZZS1880.11 ZZS1
526aqw_G_DC705_DG706ZZZZZ2S890.12 ZZ2S
536aqw_H_DC807_DG.A808ZZZZZ1S500.09 ZZ1S
546aqw_H_DC807_DG.B808ZZZZZ1S550.09 ZZ1S
556aqw_H_DG.A808_DC.A809ZZZZZS1770.17 ZZS1
566aqw_H_DG.B808_DC.B809ZZZZZS2750.12 ZZS2
576aqw_H_DC.A809_DG810ZZZZZ1S760.17 ZZ1S
586aqw_H_DC.B809_DG810ZZZZZ1S760.17 ZZ1S
596aqw_H_DG810_DC.A811ZZZZZS1780.15 ZZS1
606aqw_H_DG810_DC.B811ZZZZZS2680.21 ZZS2
616aqw_H_DC.A811_DG812ZZZZZ2S840.16 ZZ2S
626aqw_H_DC.B811_DG812ZZZZZ2S840.16 ZZ2S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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