DNATCO v4.1: results

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position

Results of the assignment of 220 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	6alt-m10_A_DG2_5CM3	BBB	BB01	77	0.14	BB01
002	6alt-m11_A_DG2_5CM3	BBB	BB01	78	0.14	BB01
003	6alt-m1_A_DG2_5CM3	BBB	BB01	80	0.14	BB01
004	6alt-m2_A_DG2_5CM3	BBB	BB01	78	0.15	BB01
005	6alt-m3_A_DG2_5CM3	BBB	BB01	81	0.14	BB01
006	6alt-m4_A_DG2_5CM3	BBB	BB01	80	0.15	BB01
007	6alt-m5_A_DG2_5CM3	BBB	BB01	78	0.14	BB01
008	6alt-m6_A_DG2_5CM3	BBB	BB01	74	0.15	BB01
009	6alt-m7_A_DG2_5CM3	BBB	BB01	81	0.16	BB01
010	6alt-m8_A_DG2_5CM3	BBB	BB01	78	0.14	BB01
011	6alt-m9_A_DG2_5CM3	BBB	BB01	80	0.14	BB01
012	6alt-m10_A_5CM3_DG4	BBB	BB00	65	0.38	BB00
013	6alt-m11_A_5CM3_DG4	BBB	BB00	65	0.38	BB00
014	6alt-m1_A_5CM3_DG4	BBB	BB00	43	0.36	BB00
015	6alt-m2_A_5CM3_DG4	BBB	BB00	65	0.38	BB00
016	6alt-m3_A_5CM3_DG4	B-A	BA05	61	0.13	BA05
017	6alt-m4_A_5CM3_DG4	BBB	BB00	66	0.37	BB00
018	6alt-m5_A_5CM3_DG4	BBB	BB00	65	0.39	BB00
019	6alt-m6_A_5CM3_DG4	BBB	BB00	65	0.38	BB00
020	6alt-m7_A_5CM3_DG4	BBB	BB00	67	0.36	BB00
021	6alt-m8_A_5CM3_DG4	BBB	BB00	64	0.39	BB00
022	6alt-m9_A_5CM3_DG4	BBB	BB00	66	0.36	BB00
023	6alt-m10_A_DG4_DA5	B12	BB04	57	0.34	BB04
024	6alt-m11_A_DG4_DA5	B12	BB04	55	0.34	BB04
025	6alt-m1_A_DG4_DA5	B12	BB04	13	0.31	BB04
026	6alt-m2_A_DG4_DA5	B12	BB04	57	0.34	BB04
027	6alt-m3_A_DG4_DA5	BBB	BB01	24	0.38	BB01
028	6alt-m4_A_DG4_DA5	B12	BB04	56	0.34	BB04
029	6alt-m5_A_DG4_DA5	B12	BB04	57	0.34	BB04
030	6alt-m6_A_DG4_DA5	B12	BB04	55	0.34	BB04
031	6alt-m7_A_DG4_DA5	B12	BB04	53	0.35	BB04
032	6alt-m8_A_DG4_DA5	B12	BB04	56	0.34	BB04
033	6alt-m9_A_DG4_DA5	B12	BB04	56	0.34	BB04
034	6alt-m10_A_DA5_DA6	BBB	BB00	74	0.31	BB00
035	6alt-m11_A_DA5_DA6	BBB	BB00	75	0.30	BB00
036	6alt-m1_A_DA5_DA6	BBB	BB00	78	0.29	BB00
037	6alt-m2_A_DA5_DA6	BBB	BB00	75	0.30	BB00
038	6alt-m3_A_DA5_DA6	BBB	BB00	81	0.29	BB00
039	6alt-m4_A_DA5_DA6	BBB	BB00	74	0.30	BB00
040	6alt-m5_A_DA5_DA6	BBB	BB00	76	0.29	BB00
041	6alt-m6_A_DA5_DA6	BBB	BB00	75	0.30	BB00
042	6alt-m7_A_DA5_DA6	BBB	BB00	75	0.31	BB00
043	6alt-m8_A_DA5_DA6	BBB	BB00	75	0.30	BB00
044	6alt-m9_A_DA5_DA6	BBB	BB00	73	0.32	BB00
045	6alt-m10_A_DA6_DT7	B-A	BA05	92	0.26	BA05
046	6alt-m11_A_DA6_DT7	B-A	BA05	90	0.27	BA05
047	6alt-m1_A_DA6_DT7	B-A	BA05	90	0.27	BA05
048	6alt-m2_A_DA6_DT7	B-A	BA05	90	0.27	BA05
049	6alt-m3_A_DA6_DT7	B-A	BA05	89	0.28	BA05
050	6alt-m4_A_DA6_DT7	B-A	BA05	91	0.27	BA05
051	6alt-m5_A_DA6_DT7	B-A	BA05	91	0.26	BA05
052	6alt-m6_A_DA6_DT7	B-A	BA05	90	0.28	BA05
053	6alt-m7_A_DA6_DT7	B-A	BA05	89	0.28	BA05
054	6alt-m8_A_DA6_DT7	B-A	BA05	91	0.27	BA05
055	6alt-m9_A_DA6_DT7	B-A	BA05	91	0.27	BA05
056	6alt-m10_A_DT7_DT8	BBB	BB01	78	0.17	BB01
057	6alt-m11_A_DT7_DT8	BBB	BB01	78	0.16	BB01
058	6alt-m1_A_DT7_DT8	BBB	BB01	78	0.16	BB01
059	6alt-m2_A_DT7_DT8	BBB	BB01	77	0.16	BB01
060	6alt-m3_A_DT7_DT8	BBB	BB01	77	0.15	BB01
061	6alt-m4_A_DT7_DT8	BBB	BB01	77	0.16	BB01
062	6alt-m5_A_DT7_DT8	BBB	BB01	77	0.16	BB01
063	6alt-m6_A_DT7_DT8	BBB	BB01	79	0.16	BB01
064	6alt-m7_A_DT7_DT8	BBB	BB01	79	0.16	BB01
065	6alt-m8_A_DT7_DT8	BBB	BB01	76	0.16	BB01
066	6alt-m9_A_DT7_DT8	BBB	BB01	79	0.16	BB01
067	6alt-m10_A_DT8_5CM9	B-A	BA05	92	0.20	BA05
068	6alt-m11_A_DT8_5CM9	B-A	BA05	93	0.21	BA05
069	6alt-m1_A_DT8_5CM9	B-A	BA05	94	0.20	BA05
070	6alt-m2_A_DT8_5CM9	B-A	BA05	92	0.22	BA05
071	6alt-m3_A_DT8_5CM9	B-A	BA05	93	0.20	BA05
072	6alt-m4_A_DT8_5CM9	B-A	BA05	92	0.20	BA05
073	6alt-m5_A_DT8_5CM9	B-A	BA05	93	0.22	BA05
074	6alt-m6_A_DT8_5CM9	B-A	BA05	92	0.23	BA05
075	6alt-m7_A_DT8_5CM9	B-A	BA05	92	0.22	BA05
076	6alt-m8_A_DT8_5CM9	B-A	BA05	93	0.20	BA05
077	6alt-m9_A_DT8_5CM9	B-A	BA05	92	0.23	BA05
078	6alt-m10_A_5CM9_DG10	BBB	BB01	36	0.27	BB01
079	6alt-m11_A_5CM9_DG10	BBB	BB01	32	0.27	BB01
080	6alt-m1_A_5CM9_DG10	BBB	BB01	34	0.27	BB01
081	6alt-m2_A_5CM9_DG10	BBB	BB01	32	0.28	BB01
082	6alt-m3_A_5CM9_DG10	BBB	BB01	33	0.27	BB01
083	6alt-m4_A_5CM9_DG10	BBB	BB01	36	0.26	BB01
084	6alt-m5_A_5CM9_DG10	BBB	BB01	31	0.27	BB01
085	6alt-m6_A_5CM9_DG10	BBB	BB01	33	0.28	BB01
086	6alt-m7_A_5CM9_DG10	BBB	BB01	34	0.28	BB01
087	6alt-m8_A_5CM9_DG10	BBB	BB01	32	0.27	BB01
088	6alt-m9_A_5CM9_DG10	BBB	BB01	40	0.26	BB01
089	6alt-m10_A_DG10_DC11	BBB	BB00	76	0.24	BB00
090	6alt-m11_A_DG10_DC11	BBB	BB00	75	0.28	BB00
091	6alt-m1_A_DG10_DC11	BBB	BB00	76	0.26	BB00
092	6alt-m2_A_DG10_DC11	BBB	BB00	77	0.24	BB00
093	6alt-m3_A_DG10_DC11	BBB	BB00	75	0.27	BB00
094	6alt-m4_A_DG10_DC11	BBB	BB00	74	0.28	BB00
095	6alt-m5_A_DG10_DC11	BBB	BB00	76	0.26	BB00
096	6alt-m6_A_DG10_DC11	BBB	BB00	77	0.24	BB00
097	6alt-m7_A_DG10_DC11	BBB	BB00	78	0.24	BB00
098	6alt-m8_A_DG10_DC11	BBB	BB00	75	0.27	BB00
099	6alt-m9_A_DG10_DC11	BBB	BB00	78	0.23	BB00
100	6alt-m10_A_DC11_DG12	BBB	BB00	81	0.22	BB00
101	6alt-m11_A_DC11_DG12	BBB	BB00	76	0.27	BB00
102	6alt-m1_A_DC11_DG12	BBB	BB00	80	0.23	BB00
103	6alt-m2_A_DC11_DG12	BBB	BB00	82	0.20	BB00
104	6alt-m3_A_DC11_DG12	BBB	BB00	80	0.22	BB00
105	6alt-m4_A_DC11_DG12	BBB	BB00	79	0.24	BB00
106	6alt-m5_A_DC11_DG12	BBB	BB00	81	0.20	BB00
107	6alt-m6_A_DC11_DG12	BBB	BB00	81	0.22	BB00
108	6alt-m7_A_DC11_DG12	BBB	BB00	82	0.22	BB00
109	6alt-m8_A_DC11_DG12	BBB	BB00	78	0.24	BB00
110	6alt-m9_A_DC11_DG12	BBB	BB00	83	0.18	BB00
111	6alt-m10_B_DG14_5CM15	BBB	BB01	78	0.15	BB01
112	6alt-m11_B_DG14_5CM15	BBB	BB01	76	0.14	BB01
113	6alt-m1_B_DG14_5CM15	BBB	BB01	82	0.15	BB01
114	6alt-m2_B_DG14_5CM15	BBB	BB01	81	0.15	BB01
115	6alt-m3_B_DG14_5CM15	BBB	BB01	79	0.14	BB01
116	6alt-m4_B_DG14_5CM15	BBB	BB01	77	0.14	BB01
117	6alt-m5_B_DG14_5CM15	BBB	BB01	79	0.15	BB01
118	6alt-m6_B_DG14_5CM15	BBB	BB01	78	0.17	BB01
119	6alt-m7_B_DG14_5CM15	BBB	BB01	81	0.14	BB01
120	6alt-m8_B_DG14_5CM15	BBB	BB01	79	0.14	BB01
121	6alt-m9_B_DG14_5CM15	BBB	BB01	89	0.17	BB01
122	6alt-m10_B_5CM15_DG16	B-A	BA05	58	0.15	BA05
123	6alt-m11_B_5CM15_DG16	BBB	BB00	65	0.38	BB00
124	6alt-m1_B_5CM15_DG16	BBB	BB00	42	0.35	BB00
125	6alt-m2_B_5CM15_DG16	BBB	BB00	66	0.37	BB00
126	6alt-m3_B_5CM15_DG16	BBB	BB00	65	0.38	BB00
127	6alt-m4_B_5CM15_DG16	BBB	BB00	65	0.38	BB00
128	6alt-m5_B_5CM15_DG16	BBB	BB00	66	0.37	BB00
129	6alt-m6_B_5CM15_DG16	BBB	BB00	67	0.37	BB00
130	6alt-m7_B_5CM15_DG16	BBB	BB00	67	0.35	BB00
131	6alt-m8_B_5CM15_DG16	BBB	BB00	65	0.38	BB00
132	6alt-m9_B_5CM15_DG16	BBB	BB00	64	0.36	BB00
133	6alt-m10_B_DG16_DA17	BBB	BB01	23	0.39	BB01
134	6alt-m11_B_DG16_DA17	B12	BB04	55	0.34	BB04
135	6alt-m1_B_DG16_DA17	B12	BB04	12	0.30	BB04
136	6alt-m2_B_DG16_DA17	B12	BB04	57	0.34	BB04
137	6alt-m3_B_DG16_DA17	B12	BB04	55	0.35	BB04
138	6alt-m4_B_DG16_DA17	B12	BB04	58	0.34	BB04
139	6alt-m5_B_DG16_DA17	B12	BB04	56	0.34	BB04
140	6alt-m6_B_DG16_DA17	B12	BB04	56	0.34	BB04
141	6alt-m7_B_DG16_DA17	B12	BB04	54	0.35	BB04
142	6alt-m8_B_DG16_DA17	B12	BB04	57	0.33	BB04
143	6alt-m9_B_DG16_DA17	B12	BB04	62	0.32	BB04
144	6alt-m10_B_DA17_DA18	BBB	BB00	81	0.28	BB00
145	6alt-m11_B_DA17_DA18	BBB	BB00	76	0.30	BB00
146	6alt-m1_B_DA17_DA18	BBB	BB00	79	0.28	BB00
147	6alt-m2_B_DA17_DA18	BBB	BB00	75	0.29	BB00
148	6alt-m3_B_DA17_DA18	BBB	BB00	75	0.30	BB00
149	6alt-m4_B_DA17_DA18	BBB	BB00	76	0.29	BB00
150	6alt-m5_B_DA17_DA18	BBB	BB00	75	0.30	BB00
151	6alt-m6_B_DA17_DA18	BBB	BB00	75	0.30	BB00
152	6alt-m7_B_DA17_DA18	BBB	BB00	75	0.30	BB00
153	6alt-m8_B_DA17_DA18	BBB	BB00	76	0.28	BB00
154	6alt-m9_B_DA17_DA18	BBB	BB00	75	0.30	BB00
155	6alt-m10_B_DA18_DT19	B-A	BA05	91	0.27	BA05
156	6alt-m11_B_DA18_DT19	B-A	BA05	90	0.27	BA05
157	6alt-m1_B_DA18_DT19	B-A	BA05	90	0.27	BA05
158	6alt-m2_B_DA18_DT19	B-A	BA05	90	0.27	BA05
159	6alt-m3_B_DA18_DT19	B-A	BA05	91	0.27	BA05
160	6alt-m4_B_DA18_DT19	B-A	BA05	90	0.28	BA05
161	6alt-m5_B_DA18_DT19	B-A	BA05	91	0.27	BA05
162	6alt-m6_B_DA18_DT19	B-A	BA05	89	0.28	BA05
163	6alt-m7_B_DA18_DT19	B-A	BA05	89	0.28	BA05
164	6alt-m8_B_DA18_DT19	B-A	BA05	89	0.28	BA05
165	6alt-m9_B_DA18_DT19	B-A	BA05	91	0.27	BA05
166	6alt-m10_B_DT19_DT20	BBB	BB01	77	0.16	BB01
167	6alt-m11_B_DT19_DT20	BBB	BB01	78	0.15	BB01
168	6alt-m1_B_DT19_DT20	BBB	BB01	79	0.16	BB01
169	6alt-m2_B_DT19_DT20	BBB	BB01	78	0.16	BB01
170	6alt-m3_B_DT19_DT20	BBB	BB01	80	0.16	BB01
171	6alt-m4_B_DT19_DT20	BBB	BB01	79	0.15	BB01
172	6alt-m5_B_DT19_DT20	BBB	BB01	76	0.16	BB01
173	6alt-m6_B_DT19_DT20	BBB	BB01	78	0.15	BB01
174	6alt-m7_B_DT19_DT20	BBB	BB01	80	0.15	BB01
175	6alt-m8_B_DT19_DT20	BBB	BB01	78	0.15	BB01
176	6alt-m9_B_DT19_DT20	BBB	BB01	78	0.16	BB01
177	6alt-m10_B_DT20_5CM21	B-A	BA05	93	0.20	BA05
178	6alt-m11_B_DT20_5CM21	B-A	BA05	93	0.20	BA05
179	6alt-m1_B_DT20_5CM21	B-A	BA05	95	0.19	BA05
180	6alt-m2_B_DT20_5CM21	B-A	BA05	93	0.20	BA05
181	6alt-m3_B_DT20_5CM21	B-A	BA05	92	0.20	BA05
182	6alt-m4_B_DT20_5CM21	B-A	BA05	93	0.22	BA05
183	6alt-m5_B_DT20_5CM21	B-A	BA05	92	0.21	BA05
184	6alt-m6_B_DT20_5CM21	B-A	BA05	93	0.20	BA05
185	6alt-m7_B_DT20_5CM21	B-A	BA05	91	0.24	BA05
186	6alt-m8_B_DT20_5CM21	B-A	BA05	93	0.20	BA05
187	6alt-m9_B_DT20_5CM21	B-A	BA05	93	0.21	BA05
188	6alt-m10_B_5CM21_DG22	BBB	BB01	33	0.27	BB01
189	6alt-m11_B_5CM21_DG22	BBB	BB01	34	0.27	BB01
190	6alt-m1_B_5CM21_DG22	BBB	BB01	31	0.27	BB01
191	6alt-m2_B_5CM21_DG22	BBB	BB01	31	0.28	BB01
192	6alt-m3_B_5CM21_DG22	BBB	BB01	36	0.28	BB01
193	6alt-m4_B_5CM21_DG22	BBB	BB01	36	0.28	BB01
194	6alt-m5_B_5CM21_DG22	BBB	BB01	33	0.26	BB01
195	6alt-m6_B_5CM21_DG22	BBB	BB01	30	0.28	BB01
196	6alt-m7_B_5CM21_DG22	BBB	BB01	40	0.26	BB01
197	6alt-m8_B_5CM21_DG22	BBB	BB01	28	0.28	BB01
198	6alt-m9_B_5CM21_DG22	BBB	BB01	36	0.27	BB01
199	6alt-m10_B_DG22_DC23	BBB	BB00	74	0.28	BB00
200	6alt-m11_B_DG22_DC23	BBB	BB00	73	0.28	BB00
201	6alt-m1_B_DG22_DC23	BBB	BB00	75	0.27	BB00
202	6alt-m2_B_DG22_DC23	BBB	BB00	76	0.26	BB00
203	6alt-m3_B_DG22_DC23	BBB	BB00	76	0.22	BB00
204	6alt-m4_B_DG22_DC23	BBB	BB00	76	0.24	BB00
205	6alt-m5_B_DG22_DC23	BBB	BB00	72	0.28	BB00
206	6alt-m6_B_DG22_DC23	BBB	BB00	72	0.29	BB00
207	6alt-m7_B_DG22_DC23	BBB	BB00	76	0.24	BB00
208	6alt-m8_B_DG22_DC23	BBB	BB00	72	0.28	BB00
209	6alt-m9_B_DG22_DC23	BBB	BB00	76	0.23	BB00
210	6alt-m10_B_DC23_DG24	BBB	BB00	79	0.25	BB00
211	6alt-m11_B_DC23_DG24	BBB	BB00	80	0.25	BB00
212	6alt-m1_B_DC23_DG24	BBB	BB00	81	0.23	BB00
213	6alt-m2_B_DC23_DG24	BBB	BB00	81	0.22	BB00
214	6alt-m3_B_DC23_DG24	BBB	BB00	81	0.20	BB00
215	6alt-m4_B_DC23_DG24	BBB	BB00	81	0.21	BB00
216	6alt-m5_B_DC23_DG24	BBB	BB00	80	0.23	BB00
217	6alt-m6_B_DC23_DG24	BBB	BB00	78	0.26	BB00
218	6alt-m7_B_DC23_DG24	BBB	BB00	80	0.22	BB00
219	6alt-m8_B_DC23_DG24	BBB	BB00	77	0.26	BB00
220	6alt-m9_B_DC23_DG24	BBB	BB00	80	0.20	BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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B

IC

OPN

Z

N

Results of the assignment of 220 detected steps in 11 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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