Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural Basis for Reactivation of -146C>T Mutant TERT Promoter by cooperative binding of p52 and ETS1/2

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015zmc_C_DC-5_DG-4NANNANT00.36 BB10
025zmc_C_DG-4_DG-3NANNANT00.48 AB02
035zmc_C_DG-3_DG-2NANNANT00.51 BB11
045zmc_C_DG-2_DG-1NANNANT00.48 AB03
055zmc_C_DG-1_DA0NANNANT01.16 AA05
065zmc_C_DA0_DC1NANNANT01.14 OP24
075zmc_C_DC1_DC2NANNANT00.56 BA10
085zmc_C_DC2_DC3AAAAA00900.41 AA00
095zmc_C_DC3_DG4NANNANT00.61 AA06
105zmc_C_DG4_DG5A-BAB03370.47 AB03
115zmc_C_DG5_DA6BBBBB01940.17 BB01
125zmc_C_DA6_DA7BBBBB00570.23 BB00
135zmc_C_DA7_DG8BBBBB0180.25 BB01
145zmc_C_DG8_DG9A-BAB03550.41 AB03
155zmc_C_DG9_DG10BBBBB00470.29 BB00
165zmc_D_DG107_DC108BBBBB00750.20 BB00
175zmc_D_DC108_DC109BBBBB00580.31 BB00
185zmc_D_DC109_DC110NANNANT00.47 BB05
195zmc_D_DC110_DT111NANNANT00.44 BB16
205zmc_D_DT111_DT112B-ABA05800.13 BA05
215zmc_D_DT112_DC113AAwAA01300.41 AA01
225zmc_D_DC113_DC114AAAAA00570.54 AA00
235zmc_D_DC114_DG115A-BAB03820.32 AB03
245zmc_D_DG115_DG116B-ABA01590.16 BA01
255zmc_D_DG116_DG117NANNANT00.40 AA00
265zmc_D_DG117_DT118NANNANT00.35 AA04
275zmc_D_DT118_DC119NANNANT00.41 BA10
285zmc_D_DC119_DC120NANNANT00.38 AB03
295zmc_D_DC120_DC121BBBBB00420.16 BB00
305zmc_D_DC121_DC122B12BB04840.15 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N