Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of human topoisomerase II beta in complex with DNA: a new quaternary conformation showing opening of the protein-linked DNA-gate
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5zen_B_DA1_DG2 | BBB | BB00 | 63 | 0.27 |
| 02 | 5zen_B_DG2_DC3 | NAN | NANT | 0 | 0.24 |
| 03 | 5zen_B_DC3_DC4 | B-A | BA08 | 47 | 0.36 |
| 04 | 5zen_B_DC4_DG5 | NAN | NANT | 0 | 0.50 |
| 05 | 5zen_B_DG5_DA6 | BB2 | BB07 | 10 | 0.35 |
| 06 | 5zen_B_DA6_DG7 | B-A | BA10 | 74 | 0.27 |
| 07 | 5zen_B_DG7_DC8 | AAA | AA00 | 77 | 0.21 |
| 08 | 5zen_C_DA12_DG13 | SYN | BBS1 | 72 | 0.21 |
| 09 | 5zen_C_DG13_DC14 | B-A | BA05 | 17 | 0.33 |
| 10 | 5zen_C_DC14_DT15 | A-B | AB05 | 50 | 0.38 |
| 11 | 5zen_C_DT15_DC16 | NAN | NANT | 0 | 0.68 |
| 12 | 5zen_C_DC16_DG17 | NAN | NANT | 0 | 0.39 |
| 13 | 5zen_C_DG17_DG18 | BBB | BB00 | 76 | 0.23 |
| 14 | 5zen_C_DG18_DC19 | B-A | BA01 | 12 | 0.27 |
| 15 | 5zen_C_DC19_DT20 | BBB | BB01 | 19 | 0.46 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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