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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The crystal structure of the nucleosome containing a cancer-associated histone H2A.Z R80C mutant

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015z30_I_DA1_DT2NANNANT00.71 BB11
0025z30_I_DT2_DC3NANNANT00.41 BB11
0035z30_I_DC3_DA4BBwBB16540.58 BB16
0045z30_I_DA4_DA5BBBBB00860.11 BB00
0055z30_I_DA5_DT6BBBBB01760.19 BB01
0065z30_I_DT6_DA7BBBBB00400.33 BB00
0075z30_I_DA7_DT8BBBBB00590.21 BB00
0085z30_I_DT8_DC9BBBBB00770.19 BB00
0095z30_I_DC9_DC10miBBB10180.33 BB10
0105z30_I_DC10_DA11NANNANT00.32 BA13
0115z30_I_DA11_DC12NANNANT00.53 AB03
0125z30_I_DC12_DC13AAAAA02140.56 AA02
0135z30_I_DC13_DT14A-BAB01820.18 AB01
0145z30_I_DT14_DG15B12BB04350.43 BB04
0155z30_I_DG15_DC16B12BB04280.39 BB04
0165z30_I_DC16_DA17BB2BB07760.32 BB07
0175z30_I_DA17_DG18BBBBB00550.29 BB00
0185z30_I_DG18_DA19BB2BB07750.27 BB07
0195z30_I_DA19_DT20BBBBB01680.21 BB01
0205z30_I_DT20_DT21BBBBB00200.33 BB00
0215z30_I_DT21_DC22BBBBB00830.15 BB00
0225z30_I_DC22_DT23BBBBB00110.19 BB00
0235z30_I_DT23_DA24BBBBB00590.31 BB00
0245z30_I_DA24_DC25B12BB04560.33 BB04
0255z30_I_DC25_DC26B12BB04400.50 BB04
0265z30_I_DC26_DA27BB2BB07650.33 BB07
0275z30_I_DA27_DA28BBBBB00620.22 BB00
0285z30_I_DA28_DA29BB2BB07810.12 BB07
0295z30_I_DA29_DA30BBBBB00750.20 BB00
0305z30_I_DA30_DG31BBBBB00810.30 BB00
0315z30_I_DG31_DT32BBBBB00540.19 BB00
0325z30_I_DT32_DG33BBBBB00710.12 BB00
0335z30_I_DG33_DT34BBBBB00520.17 BB00
0345z30_I_DT34_DA35BBBBB00790.26 BB00
0355z30_I_DA35_DT36BBBBB01730.15 BB01
0365z30_I_DT36_DT37BBwBB02250.36 BB02
0375z30_I_DT37_DT38BBBBB00250.20 BB00
0385z30_I_DT38_DG39BB2BB07850.28 BB07
0395z30_I_DG39_DG40BBBBB00620.28 BB00
0405z30_I_DG40_DA41BB2BB07110.24 BB07
0415z30_I_DA41_DA42BBBBB00880.12 BB00
0425z30_I_DA42_DA43BBBBB00630.19 BB00
0435z30_I_DA43_DC44B-ABA10680.39 BA10
0445z30_I_DC44_DT45NANNANT00.44 BB16
0455z30_I_DT45_DG46BBwBB11540.39 BB11
0465z30_I_DG46_DC47miBBB10410.29 BB10
0475z30_I_DC47_DT48NANNANT00.39 BB08
0485z30_I_DT48_DC49NANNANT00.59 BB05
0495z30_I_DC49_DC50BBBBB00260.24 BB00
0505z30_I_DC50_DA51BBBBB00780.17 BB00
0515z30_I_DA51_DT52BBBBB01530.19 BB01
0525z30_I_DT52_DC53BBBBB01500.20 BB01
0535z30_I_DC53_DA54BBBBB01590.28 BB01
0545z30_I_DA54_DA55miBBB15300.48 BB15
0555z30_I_DA55_DA56BBBBB00650.16 BB00
0565z30_I_DA56_DA57BB2BB07650.17 BB07
0575z30_I_DA57_DG58B12BB04270.32 BB04
0585z30_I_DG58_DG59BB2BB07400.22 BB07
0595z30_I_DG59_DC60BBBBB00630.29 BB00
0605z30_I_DC60_DA61B12BB04710.26 BB04
0615z30_I_DA61_DT62BBBBB00520.19 BB00
0625z30_I_DT62_DG63BBBBB00830.21 BB00
0635z30_I_DG63_DT64BBBBB00600.23 BB00
0645z30_I_DT64_DT65BBBBB00690.19 BB00
0655z30_I_DT65_DC66BBBBB00880.18 BB00
0665z30_I_DC66_DA67BB2BB07720.12 BB07
0675z30_I_DA67_DG68B12BB04490.41 BB04
0685z30_I_DG68_DC69BB2BB07630.17 BB07
0695z30_I_DC69_DT70B12BB04360.23 BB04
0705z30_I_DT70_DG71BBBBB00760.23 BB00
0715z30_I_DG71_DA72BBBBB00700.21 BB00
0725z30_I_DA72_DA73BBBBB00260.21 BB00
0735z30_I_DA73_DT74BBBBB00400.25 BB00
0745z30_I_DT74_DT75BBBBB00760.24 BB00
0755z30_I_DT75_DC76BBBBB00920.14 BB00
0765z30_I_DC76_DA77BB2BB07800.21 BB07
0775z30_I_DA77_DG78B12BB04310.41 BB04
0785z30_I_DG78_DC79BB2BB07300.22 BB07
0795z30_I_DC79_DT80B12BB04420.35 BB04
0805z30_I_DT80_DG81BBBBB00620.42 BB00
0815z30_I_DG81_DA82BBBBB00810.19 BB00
0825z30_I_DA82_DA83BBBBB00910.10 BB00
0835z30_I_DA83_DC84BBBBB00420.24 BB00
0845z30_I_DC84_DA85B12BB04120.19 BB04
0855z30_I_DA85_DT86BBBBB00870.18 BB00
0865z30_I_DT86_DG87BBBBB00650.27 BB00
0875z30_I_DG87_DC88BB2BB07900.21 BB07
0885z30_I_DC88_DC89B12BB04360.39 BB04
0895z30_I_DC89_DT90BB2BB07760.20 BB07
0905z30_I_DT90_DT91BBBBB00710.13 BB00
0915z30_I_DT91_DT92BBBBB00700.24 BB00
0925z30_I_DT92_DT93BBBBB00690.20 BB00
0935z30_I_DT93_DG94BBBBB00290.31 BB00
0945z30_I_DG94_DA95BBBBB00480.27 BB00
0955z30_I_DA95_DT96miBBB15710.20 BB15
0965z30_I_DT96_DG97NANNANT00.59 BB02
0975z30_I_DG97_DG98BBBBB00260.37 BB00
0985z30_I_DG98_DA99BB2BB07350.26 BB07
0995z30_I_DA99_DG100BBBBB00190.30 BB00
1005z30_I_DG100_DC101NANNANT00.36 BB08
1015z30_I_DC101_DA102NANNANT00.49 BB02
1025z30_I_DA102_DG103BBBBB00380.27 BB00
1035z30_I_DG103_DT104BBwBB02340.26 BB02
1045z30_I_DT104_DT105miBBB15230.20 BB15
1055z30_I_DT105_DT106BBBBB00810.20 BB00
1065z30_I_DT106_DC107BBBBB00790.16 BB00
1075z30_I_DC107_DC108BB2BB08900.33 BB08
1085z30_I_DC108_DA109NANNANT00.70 BA17
1095z30_I_DA109_DA110BBBBB00720.21 BB00
1105z30_I_DA110_DA111B-ABA08760.26 BA08
1115z30_I_DA111_DT112A-BAB01660.30 AB01
1125z30_I_DT112_DA113BBBBB00820.21 BB00
1135z30_I_DA113_DC114BBBBB00530.22 BB00
1145z30_I_DC114_DA115B12BB04960.11 BB04
1155z30_I_DA115_DC116B-ABA05870.17 BA05
1165z30_I_DC116_DT117BBBBB01440.34 BB01
1175z30_I_DT117_DT118BBBBB00750.17 BB00
1185z30_I_DT118_DT119BBBBB01890.16 BB01
1195z30_I_DT119_DT120BBBBB00300.25 BB00
1205z30_I_DT120_DG121B12BB04430.39 BB04
1215z30_I_DG121_DG122BBBBB00710.35 BB00
1225z30_I_DG122_DT123BBBBB00730.15 BB00
1235z30_I_DT123_DA124BBBBB00750.30 BB00
1245z30_I_DA124_DG125BBBBB00700.34 BB00
1255z30_I_DG125_DA126BBBBB00730.29 BB00
1265z30_I_DA126_DA127BBBBB00880.09 BB00
1275z30_I_DA127_DT128BBwBB02760.21 BB02
1285z30_I_DT128_DC129BBBBB00320.27 BB00
1295z30_I_DC129_DT130B12BB04310.25 BB04
1305z30_I_DT130_DG131BB2BB08270.54 BB08
1315z30_I_DG131_DC132BBBBB00280.41 BB00
1325z30_I_DC132_DA133BB2BB07780.19 BB07
1335z30_I_DA133_DG134NANNANT00.57 BB05
1345z30_I_DG134_DG135NANNANT00.43 BA08
1355z30_I_DG135_DT136BBBBB01220.25 BB01
1365z30_I_DT136_DG137BBBBB00820.30 BB00
1375z30_I_DG137_DG138B12BB04640.25 BB04
1385z30_I_DG138_DA139BBBBB00630.37 BB00
1395z30_I_DA139_DT140BBBBB00320.18 BB00
1405z30_I_DT140_DA141miBBB15620.29 BB15
1415z30_I_DA141_DT142BBBBB00830.25 BB00
1425z30_I_DT142_DT143BBBBB00790.16 BB00
1435z30_I_DT143_DG144BBBBB00690.32 BB00
1445z30_I_DG144_DA145B12BB04820.25 BB04
1455z30_I_DA145_DT146BBwBB03500.21 BB03
1465z30_J_DA147_DT148NANNANT00.56 BB08
1475z30_J_DT148_DC149NANNANT00.58 BB11
1485z30_J_DC149_DA150BBBBB00310.42 BB00
1495z30_J_DA150_DA151BBBBB00890.20 BB00
1505z30_J_DA151_DT152BBBBB01850.16 BB01
1515z30_J_DT152_DA153BBBBB00460.23 BB00
1525z30_J_DA153_DT154BBBBB00580.27 BB00
1535z30_J_DT154_DC155BBBBB00760.17 BB00
1545z30_J_DC155_DC156miBBB15210.28 BB15
1555z30_J_DC156_DA157NANNANT00.39 BA13
1565z30_J_DA157_DC158A-BAB03110.52 AB03
1575z30_J_DC158_DC159B-ABA05170.28 BA05
1585z30_J_DC159_DT160A-BAB01870.15 AB01
1595z30_J_DT160_DG161B12BB04540.46 BB04
1605z30_J_DG161_DC162B12BB04360.29 BB04
1615z30_J_DC162_DA163BB2BB07790.18 BB07
1625z30_J_DA163_DG164BBBBB00690.23 BB00
1635z30_J_DG164_DA165BB2BB07680.26 BB07
1645z30_J_DA165_DT166BBBBB00450.23 BB00
1655z30_J_DT166_DT167BBBBB01740.21 BB01
1665z30_J_DT167_DC168BBBBB00710.20 BB00
1675z30_J_DC168_DT169BBBBB00120.19 BB00
1685z30_J_DT169_DA170BBBBB00600.26 BB00
1695z30_J_DA170_DC171B12BB04700.20 BB04
1705z30_J_DC171_DC172B12BB04520.51 BB04
1715z30_J_DC172_DA173NANNANT00.49 BB08
1725z30_J_DA173_DA174BBBBB00580.24 BB00
1735z30_J_DA174_DA175BB2BB07330.37 BB07
1745z30_J_DA175_DA176BBBBB00550.31 BB00
1755z30_J_DA176_DG177BBBBB00940.10 BB00
1765z30_J_DG177_DT178BBBBB00630.24 BB00
1775z30_J_DT178_DG179BBBBB00680.13 BB00
1785z30_J_DG179_DT180BBBBB00370.22 BB00
1795z30_J_DT180_DA181BBBBB00750.26 BB00
1805z30_J_DA181_DT182BBBBB01730.18 BB01
1815z30_J_DT182_DT183BBwBB02120.40 BB02
1825z30_J_DT183_DT184BBBBB00200.22 BB00
1835z30_J_DT184_DG185BB2BB07830.29 BB07
1845z30_J_DG185_DG186BBBBB00580.30 BB00
1855z30_J_DG186_DA187BB2BB07120.18 BB07
1865z30_J_DA187_DA188BBBBB00890.15 BB00
1875z30_J_DA188_DA189BBBBB00610.21 BB00
1885z30_J_DA189_DC190B-ABA10720.33 BA10
1895z30_J_DC190_DT191A-BAB0180.55 AB01
1905z30_J_DT191_DG192miBBB10470.51 BB10
1915z30_J_DG192_DC193miBBB10360.32 BB10
1925z30_J_DC193_DT194NANNANT00.46 BB08
1935z30_J_DT194_DC195NANNANT00.77 BB08
1945z30_J_DC195_DC196B12BB04110.41 BB04
1955z30_J_DC196_DA197BBBBB00740.30 BB00
1965z30_J_DA197_DT198B-ABA05750.20 BA05
1975z30_J_DT198_DC199BBBBB01500.26 BB01
1985z30_J_DC199_DA200BBBBB01560.21 BB01
1995z30_J_DA200_DA201miBBB15420.40 BB15
2005z30_J_DA201_DA202BBBBB00630.25 BB00
2015z30_J_DA202_DA203BB2BB07580.24 BB07
2025z30_J_DA203_DG204B12BB04290.29 BB04
2035z30_J_DG204_DG205BB2BB07800.13 BB07
2045z30_J_DG205_DC206BBBBB00550.27 BB00
2055z30_J_DC206_DA207B12BB04570.22 BB04
2065z30_J_DA207_DT208BBBBB00570.18 BB00
2075z30_J_DT208_DG209BBBBB00840.19 BB00
2085z30_J_DG209_DT210BBBBB00440.28 BB00
2095z30_J_DT210_DT211BBBBB00600.24 BB00
2105z30_J_DT211_DC212BBBBB00840.25 BB00
2115z30_J_DC212_DA213BB2BB07580.24 BB07
2125z30_J_DA213_DG214BB2BB07940.23 BB07
2135z30_J_DG214_DC215BBBBB00690.26 BB00
2145z30_J_DC215_DT216BB2BB07420.24 BB07
2155z30_J_DT216_DG217BBBBB00560.35 BB00
2165z30_J_DG217_DA218BBBBB00640.16 BB00
2175z30_J_DA218_DA219BBBBB00220.22 BB00
2185z30_J_DA219_DT220BBBBB00370.26 BB00
2195z30_J_DT220_DT221BBBBB00810.21 BB00
2205z30_J_DT221_DC222BBBBB00910.22 BB00
2215z30_J_DC222_DA223BB2BB07870.15 BB07
2225z30_J_DA223_DG224B12BB04500.33 BB04
2235z30_J_DG224_DC225NANNANT00.43 BB07
2245z30_J_DC225_DT226BB2BB07630.26 BB07
2255z30_J_DT226_DG227BBBBB00580.29 BB00
2265z30_J_DG227_DA228BBBBB00650.44 BB00
2275z30_J_DA228_DA229BBBBB00930.14 BB00
2285z30_J_DA229_DC230BBBBB00430.22 BB00
2295z30_J_DC230_DA231B12BB04130.17 BB04
2305z30_J_DA231_DT232BBBBB00880.17 BB00
2315z30_J_DT232_DG233BBBBB00600.32 BB00
2325z30_J_DG233_DC234BB2BB07860.16 BB07
2335z30_J_DC234_DC235B12BB04600.29 BB04
2345z30_J_DC235_DT236BB2BB07760.21 BB07
2355z30_J_DT236_DT237BBBBB01720.27 BB01
2365z30_J_DT237_DT238BBBBB00810.17 BB00
2375z30_J_DT238_DT239BBBBB00730.19 BB00
2385z30_J_DT239_DG240BBBBB00320.31 BB00
2395z30_J_DG240_DA241BBBBB00480.30 BB00
2405z30_J_DA241_DT242miBBB15650.21 BB15
2415z30_J_DT242_DG243NANNANT00.52 BB02
2425z30_J_DG243_DG244BBBBB00230.42 BB00
2435z30_J_DG244_DA245BB2BB07160.26 BB07
2445z30_J_DA245_DG246BBBBB00180.24 BB00
2455z30_J_DG246_DC247NANNANT00.37 BB08
2465z30_J_DC247_DA248NANNANT00.53 BB02
2475z30_J_DA248_DG249BBBBB00160.34 BB00
2485z30_J_DG249_DT250BBwBB02310.26 BB02
2495z30_J_DT250_DT251miBBB15210.24 BB15
2505z30_J_DT251_DT252BBBBB00750.20 BB00
2515z30_J_DT252_DC253BBBBB00760.15 BB00
2525z30_J_DC253_DC254BB2BB08880.30 BB08
2535z30_J_DC254_DA255BB2BB07150.44 BB07
2545z30_J_DA255_DA256BBBBB00750.20 BB00
2555z30_J_DA256_DA257B-ABA08750.32 BA08
2565z30_J_DA257_DT258A-BAB01450.29 AB01
2575z30_J_DT258_DA259BBBBB00780.23 BB00
2585z30_J_DA259_DC260BBBBB00500.23 BB00
2595z30_J_DC260_DA261B12BB04950.15 BB04
2605z30_J_DA261_DC262BBBBB01740.20 BB01
2615z30_J_DC262_DT263BBBBB01860.14 BB01
2625z30_J_DT263_DT264BBBBB00720.25 BB00
2635z30_J_DT264_DT265BBBBB01830.17 BB01
2645z30_J_DT265_DT266BBBBB00200.32 BB00
2655z30_J_DT266_DG267BB2BB07670.28 BB07
2665z30_J_DG267_DG268BBBBB00710.17 BB00
2675z30_J_DG268_DT269BBBBB00710.36 BB00
2685z30_J_DT269_DA270BBBBB00750.32 BB00
2695z30_J_DA270_DG271BBBBB00560.22 BB00
2705z30_J_DG271_DA272BBBBB00680.30 BB00
2715z30_J_DA272_DA273BBBBB00920.09 BB00
2725z30_J_DA273_DT274BBwBB02570.23 BB02
2735z30_J_DT274_DC275BBBBB00120.22 BB00
2745z30_J_DC275_DT276BBBBB00160.21 BB00
2755z30_J_DT276_DG277NANNANT00.56 BB08
2765z30_J_DG277_DC278BBBBB00120.44 BB00
2775z30_J_DC278_DA279BB2BB07810.23 BB07
2785z30_J_DA279_DG280NANNANT00.59 BB05
2795z30_J_DG280_DG281B-ABA08460.40 BA08
2805z30_J_DG281_DT282BBBBB00170.30 BB00
2815z30_J_DT282_DG283BBBBB00880.18 BB00
2825z30_J_DG283_DG284B12BB04840.21 BB04
2835z30_J_DG284_DA285BBBBB00420.49 BB00
2845z30_J_DA285_DT286BBBBB00300.23 BB00
2855z30_J_DT286_DA287miBBB15580.34 BB15
2865z30_J_DA287_DT288BBBBB00810.26 BB00
2875z30_J_DT288_DT289BBBBB00790.21 BB00
2885z30_J_DT289_DG290BBBBB00730.27 BB00
2895z30_J_DG290_DA291B12BB04920.11 BB04
2905z30_J_DA291_DT292BBwBB03610.17 BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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