DNATCO v4.1: results

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Results of the assignment of 132 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	5y87_A_A1_C2	AAA	AA00	94	0.08	AA00
002	5y87_A_C2_C3	AAA	AA08	82	0.21	AA08
003	5y87_A_C3_C4	AAA	AA00	78	0.22	AA00
004	5y87_A_C4_G5	AAw	AA01	52	0.36	AA01
005	5y87_A_G5_C6	AAA	AA00	37	0.24	AA00
006	5y87_A_C6_A7	NAN	NANT	0	0.98	OP09
007	5y87_A_A7_A8	OPN	OP12	70	0.33	OP12
008	5y87_A_A8_G9	AAA	AA00	67	0.23	AA00
009	5y87_A_G9_G10	AAA	AA00	72	0.31	AA00
010	5y87_A_G10_C11	AAA	AA00	71	0.12	AA00
011	5y87_A_C11_C12	AAA	AA00	94	0.14	AA00
012	5y87_A_C12_G13	AAA	AA00	93	0.17	AA00
013	5y87_A_G13_A14	AAA	AA00	89	0.14	AA00
014	5y87_A_A14_C15	AAA	AA00	85	0.18	AA00
015	5y87_A_C15_G16	AAA	AA00	87	0.13	AA00
016	5y87_A_G16_G17	AAA	AA00	92	0.13	AA00
017	5y87_A_G17_C18	AAA	AA00	73	0.20	AA00
018	5y87_B_G1_C2	AAA	AA00	86	0.16	AA00
019	5y87_B_C2_C3	AAA	AA00	74	0.18	AA00
020	5y87_B_C3_G4	AAw	AA01	57	0.26	AA01
021	5y87_B_G4_C5	AAA	AA08	86	0.29	AA08
022	5y87_B_C5_C6	A-B	AB05	88	0.21	AB05
023	5y87_B_C6_G7	NAN	NANT	0	2.00	OP17
024	5y87_B_G7_C8	AAA	AA00	38	0.29	AA00
025	5y87_B_C8_U9	AAA	AA00	91	0.13	AA00
026	5y87_B_U9_G10	AAA	AA08	80	0.22	AA08
027	5y87_B_G10_G11	AAA	AA08	88	0.22	AA08
028	5y87_B_G11_U12	AAA	AA00	82	0.19	AA00
029	5y87_B_U12_G13	AAA	AA08	69	0.37	AA08
030	5y87_B_G13_C14	OPN	OP04	72	0.25	OP04
031	5y87_B_C14_A15	AAA	AA00	13	0.46	AA00
032	5y87_B_A15_A16	NAN	NANT	0	0.49	IC01
033	5y87_B_A16_G17	NAN	NANT	0	0.82	OP14
034	5y87_B_G17_U18	A-B	AB05	52	0.41	AB05
035	5y87_B_U18_C19	OPN	OP12	56	0.36	OP12
036	5y87_B_C19_C20	AAA	AA00	58	0.29	AA00
037	5y87_B_C20_A21	AAA	AA00	84	0.17	AA00
038	5y87_B_A21_G22	AAA	AA00	79	0.16	AA00
039	5y87_B_G22_C23	AAA	AA00	63	0.25	AA00
040	5y87_B_C23_C24	AAA	AA00	87	0.18	AA00
041	5y87_B_C24_A25	AAA	AA00	87	0.14	AA00
042	5y87_B_A25_C26	AAA	AA00	94	0.07	AA00
043	5y87_B_C26_G27	AAA	AA00	78	0.19	AA00
044	5y87_B_G27_C28	AAA	AA00	93	0.13	AA00
045	5y87_B_C28_U29	AAA	AA00	90	0.22	AA00
046	5y87_B_U29_U30	OPN	OP09	81	0.14	OP09
047	5y87_B_U30_C31	OPN	OP20	61	0.42	OP20
048	5y87_B_C31_G32	ZZZ	ZZ1S	16	0.34	ZZ1S
049	5y87_B_G32_G33	NAN	NANT	0	0.75	AAS1
050	5y87_B_G33_C34	AAA	AA00	89	0.18	AA00
051	5y87_B_C34_G35	AAA	AA00	94	0.14	AA00
052	5y87_B_G35_U36	AAA	AA00	90	0.12	AA00
053	5y87_B_U36_G37	AAA	AA00	90	0.16	AA00
054	5y87_B_G37_G38	NAN	NANT	0	2.10	OP27
055	5y87_B_G38_G39	AAA	AA00	82	0.17	AA00
056	5y87_B_G39_C40	AAA	AA00	76	0.25	AA00
057	5y87_B_C40_G41	A-B	AB05	73	0.51	AB05
058	5y87_B_G41_C42	NAN	NANT	0	0.53	OP26
059	5y87_B_C42_U43	AAA	AA00	18	0.47	AA00
060	5y87_B_U43_DC44	NAN	NANT	0	1.03	OP03
061	5y87_B_DC44_A45	NAN	NANT	0	0.76	OP17
062	5y87_B_A45_U46	NAN	NANT	0	0.84	AA08
063	5y87_B_U46_G47	NAN	NANT	0	0.61	AA01
064	5y87_B_G47_G48	AAA	AA08	84	0.17	AA08
065	5y87_B_G48_G49	AAA	AA00	85	0.19	AA00
066	5y87_B_G49_U50	AAA	AA00	92	0.17	AA00
067	5y87_C_A1_C2	AAA	AA00	85	0.14	AA00
068	5y87_C_C2_C3	AAA	AA00	92	0.13	AA00
069	5y87_C_C3_C4	AAA	AA00	95	0.16	AA00
070	5y87_C_C4_G5	AAw	AA01	46	0.34	AA01
071	5y87_C_G5_C6	AAA	AA03	75	0.24	AA03
072	5y87_C_C6_A7	NAN	NANT	0	0.98	OP09
073	5y87_C_A7_A8	OPN	OP12	66	0.28	OP12
074	5y87_C_A8_G9	AAA	AA00	71	0.23	AA00
075	5y87_C_G9_G10	AAA	AA00	64	0.29	AA00
076	5y87_C_G10_C11	AAA	AA00	82	0.08	AA00
077	5y87_C_C11_C12	AAA	AA00	94	0.15	AA00
078	5y87_C_C12_G13	AAA	AA00	88	0.21	AA00
079	5y87_C_G13_A14	AAA	AA00	86	0.16	AA00
080	5y87_C_A14_C15	AAA	AA00	77	0.18	AA00
081	5y87_C_C15_G16	AAA	AA00	87	0.13	AA00
082	5y87_C_G16_G17	AAA	AA00	73	0.18	AA00
083	5y87_C_G17_C18	AAA	AA00	89	0.15	AA00
084	5y87_D_G1_C2	AAA	AA08	82	0.23	AA08
085	5y87_D_C2_C3	AAA	AA08	78	0.22	AA08
086	5y87_D_C3_G4	AAA	AA00	89	0.15	AA00
087	5y87_D_G4_C5	AAA	AA00	73	0.29	AA00
088	5y87_D_C5_C6	A-B	AB05	89	0.22	AB05
089	5y87_D_C6_G7	NAN	NANT	0	2.03	OP17
090	5y87_D_G7_C8	AAA	AA08	43	0.28	AA08
091	5y87_D_C8_U9	AAA	AA00	97	0.12	AA00
092	5y87_D_U9_G10	AAA	AA08	56	0.28	AA08
093	5y87_D_G10_G11	AAA	AA08	77	0.25	AA08
094	5y87_D_G11_U12	AAA	AA00	94	0.16	AA00
095	5y87_D_U12_G13	AAA	AA08	79	0.35	AA08
096	5y87_D_G13_C14	OPN	OP04	92	0.21	OP04
097	5y87_D_C14_A15	AAA	AA00	18	0.45	AA00
098	5y87_D_A15_A16	NAN	NANT	0	0.44	IC01
099	5y87_D_A16_G17	NAN	NANT	0	0.81	OP14
100	5y87_D_G17_U18	A-B	AB05	62	0.39	AB05
101	5y87_D_U18_C19	OPN	OP12	65	0.31	OP12
102	5y87_D_C19_C20	AAA	AA00	60	0.29	AA00
103	5y87_D_C20_A21	AAA	AA00	96	0.14	AA00
104	5y87_D_A21_G22	AAA	AA00	75	0.17	AA00
105	5y87_D_G22_C23	AAA	AA00	89	0.23	AA00
106	5y87_D_C23_C24	AAA	AA00	81	0.20	AA00
107	5y87_D_C24_A25	AAA	AA00	84	0.16	AA00
108	5y87_D_A25_C26	AAA	AA00	80	0.15	AA00
109	5y87_D_C26_G27	AAA	AA00	66	0.15	AA00
110	5y87_D_G27_C28	AAA	AA00	84	0.11	AA00
111	5y87_D_C28_U29	AAA	AA00	89	0.22	AA00
112	5y87_D_U29_U30	OPN	OP09	67	0.15	OP09
113	5y87_D_U30_C31	NAN	NANT	0	0.45	OP20
114	5y87_D_C31_G32	ZZZ	ZZ1S	14	0.33	ZZ1S
115	5y87_D_G32_G33	NAN	NANT	0	0.46	AA05
116	5y87_D_G33_C34	AAA	AA00	90	0.18	AA00
117	5y87_D_C34_G35	AAA	AA00	92	0.13	AA00
118	5y87_D_G35_U36	AAA	AA00	70	0.10	AA00
119	5y87_D_U36_G37	AAA	AA00	92	0.17	AA00
120	5y87_D_G37_G38	NAN	NANT	0	2.10	OP27
121	5y87_D_G38_G39	AAA	AA00	76	0.18	AA00
122	5y87_D_G39_C40	AAA	AA08	76	0.27	AA08
123	5y87_D_C40_G41	A-B	AB05	73	0.52	AB05
124	5y87_D_G41_C42	NAN	NANT	0	0.55	OP26
125	5y87_D_C42_U43	AAA	AA00	23	0.44	AA00
126	5y87_D_U43_DC44	NAN	NANT	0	1.05	OP03
127	5y87_D_DC44_A45	NAN	NANT	0	0.71	OP17
128	5y87_D_A45_U46	NAN	NANT	0	0.79	AA08
129	5y87_D_U46_G47	NAN	NANT	0	0.62	AA01
130	5y87_D_G47_G48	AAA	AA00	59	0.15	AA00
131	5y87_D_G48_G49	AAA	AA00	74	0.22	AA00
132	5y87_D_G49_U50	AAA	AA00	83	0.18	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 132 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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User-based restraints

Definitions

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