DNATCO v4.1: results

Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme

Results of the assignment of 132 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	5y85_A_A1_C2	AAA	AA00	96	0.08	AA00
002	5y85_A_C2_C3	AAA	AA00	95	0.14	AA00
003	5y85_A_C3_C4	AAA	AA00	93	0.17	AA00
004	5y85_A_C4_G5	AAw	AA01	60	0.29	AA01
005	5y85_A_G5_C6	AAA	AA08	68	0.22	AA08
006	5y85_A_C6_A7	NAN	NANT	0	1.07	OP09
007	5y85_A_A7_A8	OPN	OP12	78	0.25	OP12
008	5y85_A_A8_G9	AAA	AA00	67	0.21	AA00
009	5y85_A_G9_G10	AAA	AA00	77	0.28	AA00
010	5y85_A_G10_C11	AAA	AA00	88	0.13	AA00
011	5y85_A_C11_C12	AAA	AA00	93	0.13	AA00
012	5y85_A_C12_G13	AAA	AA00	94	0.15	AA00
013	5y85_A_G13_A14	AAA	AA00	87	0.08	AA00
014	5y85_A_A14_C15	AAA	AA00	87	0.17	AA00
015	5y85_A_C15_G16	AAA	AA00	84	0.13	AA00
016	5y85_A_G16_G17	AAA	AA00	97	0.09	AA00
017	5y85_A_G17_C18	AAA	AA00	89	0.19	AA00
018	5y85_B_G1_C2	AAA	AA00	93	0.12	AA00
019	5y85_B_C2_C3	AAA	AA00	90	0.16	AA00
020	5y85_B_C3_G4	AAw	AA06	89	0.25	AA06
021	5y85_B_G4_C5	AAA	AA08	85	0.26	AA08
022	5y85_B_C5_C6	A-B	AB05	91	0.21	AB05
023	5y85_B_C6_G7	NAN	NANT	0	2.03	OP17
024	5y85_B_G7_C8	AAA	AA08	26	0.30	AA08
025	5y85_B_C8_U9	AAA	AA00	97	0.09	AA00
026	5y85_B_U9_G10	AAA	AA00	71	0.16	AA00
027	5y85_B_G10_G11	AAA	AA00	78	0.20	AA00
028	5y85_B_G11_U12	AAA	AA00	84	0.18	AA00
029	5y85_B_U12_G13	AAA	AA08	78	0.33	AA08
030	5y85_B_G13_C14	OPN	OP04	92	0.21	OP04
031	5y85_B_C14_A15	AAA	AA00	21	0.44	AA00
032	5y85_B_A15_A16	NAN	NANT	0	0.45	IC01
033	5y85_B_A16_G17	NAN	NANT	0	0.87	OP14
034	5y85_B_G17_U18	A-B	AB05	52	0.45	AB05
035	5y85_B_U18_C19	OPN	OP12	92	0.26	OP12
036	5y85_B_C19_C20	AAA	AA00	73	0.24	AA00
037	5y85_B_C20_A21	AAA	AA00	93	0.16	AA00
038	5y85_B_A21_G22	AAA	AA00	82	0.14	AA00
039	5y85_B_G22_C23	AAA	AA00	83	0.19	AA00
040	5y85_B_C23_C24	AAA	AA00	92	0.18	AA00
041	5y85_B_C24_A25	AAA	AA00	82	0.18	AA00
042	5y85_B_A25_C26	AAA	AA00	96	0.11	AA00
043	5y85_B_C26_G27	AAA	AA00	82	0.14	AA00
044	5y85_B_G27_C28	AAA	AA00	92	0.14	AA00
045	5y85_B_C28_U29	AAA	AA00	92	0.21	AA00
046	5y85_B_U29_U30	OPN	OP09	83	0.12	OP09
047	5y85_B_U30_C31	OPN	OP20	62	0.41	OP20
048	5y85_B_C31_G32	NAN	NANT	0	0.34	ZZ1S
049	5y85_B_G32_G33	NAN	NANT	0	0.74	AAS1
050	5y85_B_G33_C34	AAA	AA00	92	0.16	AA00
051	5y85_B_C34_G35	AAA	AA00	94	0.10	AA00
052	5y85_B_G35_U36	AAA	AA00	93	0.08	AA00
053	5y85_B_U36_G37	AAA	AA00	93	0.17	AA00
054	5y85_B_G37_G38	NAN	NANT	0	2.11	OP27
055	5y85_B_G38_G39	AAA	AA00	84	0.14	AA00
056	5y85_B_G39_C40	AAA	AA00	85	0.25	AA00
057	5y85_B_C40_G41	A-B	AB05	73	0.47	AB05
058	5y85_B_G41_C42	NAN	NANT	0	0.51	OP26
059	5y85_B_C42_U43	AAA	AA00	30	0.44	AA00
060	5y85_B_U43_DC44	NAN	NANT	0	1.01	OP03
061	5y85_B_DC44_A45	NAN	NANT	0	0.81	OP17
062	5y85_B_A45_U46	NAN	NANT	0	0.81	AA08
063	5y85_B_U46_G47	NAN	NANT	0	0.63	AA01
064	5y85_B_G47_G48	AAA	AA00	65	0.19	AA00
065	5y85_B_G48_G49	AAA	AA00	90	0.11	AA00
066	5y85_B_G49_U50	AAA	AA00	85	0.20	AA00
067	5y85_C_A1_C2	AAA	AA00	92	0.10	AA00
068	5y85_C_C2_C3	AAA	AA00	96	0.12	AA00
069	5y85_C_C3_C4	AAA	AA00	89	0.16	AA00
070	5y85_C_C4_G5	AAw	AA05	75	0.31	AA05
071	5y85_C_G5_C6	AAA	AA08	66	0.24	AA08
072	5y85_C_C6_A7	NAN	NANT	0	1.01	OP09
073	5y85_C_A7_A8	OPN	OP12	86	0.21	OP12
074	5y85_C_A8_G9	AAA	AA08	81	0.14	AA08
075	5y85_C_G9_G10	AAA	AA00	85	0.22	AA00
076	5y85_C_G10_C11	AAA	AA00	91	0.10	AA00
077	5y85_C_C11_C12	AAA	AA00	97	0.14	AA00
078	5y85_C_C12_G13	AAA	AA00	95	0.16	AA00
079	5y85_C_G13_A14	AAA	AA00	92	0.12	AA00
080	5y85_C_A14_C15	AAA	AA00	80	0.20	AA00
081	5y85_C_C15_G16	AAA	AA00	89	0.12	AA00
082	5y85_C_G16_G17	AAA	AA00	91	0.13	AA00
083	5y85_C_G17_C18	AAA	AA00	83	0.17	AA00
084	5y85_D_G1_C2	AAA	AA00	80	0.12	AA00
085	5y85_D_C2_C3	AAA	AA00	84	0.20	AA00
086	5y85_D_C3_G4	AAA	AA00	81	0.14	AA00
087	5y85_D_G4_C5	AAA	AA00	68	0.28	AA00
088	5y85_D_C5_C6	A-B	AB05	88	0.24	AB05
089	5y85_D_C6_G7	NAN	NANT	0	2.01	OP17
090	5y85_D_G7_C8	AAA	AA08	45	0.26	AA08
091	5y85_D_C8_U9	AAA	AA00	96	0.13	AA00
092	5y85_D_U9_G10	AAA	AA00	54	0.21	AA00
093	5y85_D_G10_G11	AAA	AA00	84	0.17	AA00
094	5y85_D_G11_U12	AAA	AA00	85	0.17	AA00
095	5y85_D_U12_G13	AAA	AA08	75	0.34	AA08
096	5y85_D_G13_C14	OPN	OP04	93	0.19	OP04
097	5y85_D_C14_A15	AAA	AA00	25	0.43	AA00
098	5y85_D_A15_A16	NAN	NANT	0	0.45	IC01
099	5y85_D_A16_G17	NAN	NANT	0	0.83	OP14
100	5y85_D_G17_U18	A-B	AB05	58	0.45	AB05
101	5y85_D_U18_C19	OPN	OP12	93	0.27	OP12
102	5y85_D_C19_C20	AAA	AA00	74	0.25	AA00
103	5y85_D_C20_A21	AAA	AA00	95	0.14	AA00
104	5y85_D_A21_G22	AAA	AA00	81	0.15	AA00
105	5y85_D_G22_C23	AAA	AA00	83	0.20	AA00
106	5y85_D_C23_C24	AAA	AA00	92	0.19	AA00
107	5y85_D_C24_A25	AAA	AA00	91	0.13	AA00
108	5y85_D_A25_C26	AAA	AA00	90	0.13	AA00
109	5y85_D_C26_G27	AAA	AA00	90	0.10	AA00
110	5y85_D_G27_C28	AAA	AA00	93	0.14	AA00
111	5y85_D_C28_U29	AAA	AA00	91	0.25	AA00
112	5y85_D_U29_U30	OPN	OP09	85	0.11	OP09
113	5y85_D_U30_C31	OPN	OP20	58	0.41	OP20
114	5y85_D_C31_G32	NAN	NANT	0	0.33	ZZ1S
115	5y85_D_G32_G33	NAN	NANT	0	0.47	AA05
116	5y85_D_G33_C34	AAA	AA00	88	0.16	AA00
117	5y85_D_C34_G35	AAA	AA00	92	0.09	AA00
118	5y85_D_G35_U36	AAA	AA00	89	0.09	AA00
119	5y85_D_U36_G37	AAA	AA00	91	0.17	AA00
120	5y85_D_G37_G38	NAN	NANT	0	2.13	OP27
121	5y85_D_G38_G39	AAA	AA00	77	0.15	AA00
122	5y85_D_G39_C40	AAA	AA00	82	0.24	AA00
123	5y85_D_C40_G41	A-B	AB05	71	0.48	AB05
124	5y85_D_G41_C42	NAN	NANT	0	0.52	OP26
125	5y85_D_C42_U43	AAA	AA00	32	0.42	AA00
126	5y85_D_U43_DC44	NAN	NANT	0	1.02	OP03
127	5y85_D_DC44_A45	NAN	NANT	0	0.74	OP17
128	5y85_D_A45_U46	NAN	NANT	0	0.79	AA08
129	5y85_D_U46_G47	AAw	AA05	11	0.43	AA05
130	5y85_D_G47_G48	AAA	AA00	65	0.14	AA00
131	5y85_D_G48_G49	AAA	AA00	86	0.15	AA00
132	5y85_D_G49_U50	AAA	AA00	92	0.14	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 132 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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