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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of the human nucleosome containing the H2B E76K mutant

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015y0d_I_DA1_DT2NANNANT01.06 BB03
0025y0d_I_DT2_DC3NANNANT00.64 BA10
0035y0d_I_DC3_DA4BBBBB00500.38 BB00
0045y0d_I_DA4_DA5B12BB0490.35 BB04
0055y0d_I_DA5_DT6BBwBB02410.20 BB02
0065y0d_I_DT6_DA7B12BB04700.28 BB04
0075y0d_I_DA7_DT8BBBBB00480.16 BB00
0085y0d_I_DT8_DC9BBBBB00810.21 BB00
0095y0d_I_DC9_DC10NANNANT00.35 BB02
0105y0d_I_DC10_DA11BBwBB11800.27 BB11
0115y0d_I_DA11_DC12NANNANT00.56 AB03
0125y0d_I_DC12_DC13B-ABA05210.32 BA05
0135y0d_I_DC13_DT14A-BAB01700.15 AB01
0145y0d_I_DT14_DG15B12BB04430.35 BB04
0155y0d_I_DG15_DC16NANNANT00.33 BB10
0165y0d_I_DC16_DA17BB2BB07550.34 BB07
0175y0d_I_DA17_DG18BBBBB00600.32 BB00
0185y0d_I_DG18_DA19BBBBB00650.28 BB00
0195y0d_I_DA19_DT20BBBBB00840.17 BB00
0205y0d_I_DT20_DT21BBBBB00840.16 BB00
0215y0d_I_DT21_DC22BBBBB00960.14 BB00
0225y0d_I_DC22_DT23BBBBB00120.22 BB00
0235y0d_I_DT23_DA24BBBBB00830.21 BB00
0245y0d_I_DA24_DC25B12BB04900.25 BB04
0255y0d_I_DC25_DC26BBBBB00870.22 BB00
0265y0d_I_DC26_DA27BB2BB07720.36 BB07
0275y0d_I_DA27_DA28BBBBB00580.30 BB00
0285y0d_I_DA28_DA29B12BB04870.18 BB04
0295y0d_I_DA29_DA30BBBBB00910.11 BB00
0305y0d_I_DA30_DG31BBBBB00860.28 BB00
0315y0d_I_DG31_DT32BBBBB00660.20 BB00
0325y0d_I_DT32_DG33BBBBB00770.16 BB00
0335y0d_I_DG33_DT34BBBBB00940.21 BB00
0345y0d_I_DT34_DA35BBBBB00840.19 BB00
0355y0d_I_DA35_DT36BBBBB01730.12 BB01
0365y0d_I_DT36_DT37BBBBB00280.28 BB00
0375y0d_I_DT37_DT38BBBBB00880.12 BB00
0385y0d_I_DT38_DG39BB2BB07160.34 BB07
0395y0d_I_DG39_DG40BBBBB00550.32 BB00
0405y0d_I_DG40_DA41BB2BB07130.22 BB07
0415y0d_I_DA41_DA42BBBBB00560.23 BB00
0425y0d_I_DA42_DA43BBBBB00640.28 BB00
0435y0d_I_DA43_DC44B-ABA10770.35 BA10
0445y0d_I_DC44_DT45NANNANT00.35 AB04
0455y0d_I_DT45_DG46BBwBB11550.42 BB11
0465y0d_I_DG46_DC47NANNANT00.48 BB15
0475y0d_I_DC47_DT48BB2BB08670.48 BB08
0485y0d_I_DT48_DC49NANNANT00.61 BB02
0495y0d_I_DC49_DC50BBBBB00220.31 BB00
0505y0d_I_DC50_DA51BBBBB00940.11 BB00
0515y0d_I_DA51_DT52BBBBB01680.22 BB01
0525y0d_I_DT52_DC53BBBBB00200.29 BB00
0535y0d_I_DC53_DA54B-ABA01580.24 BA01
0545y0d_I_DA54_DA55A-BAB03780.38 AB03
0555y0d_I_DA55_DA56BBBBB00840.15 BB00
0565y0d_I_DA56_DA57B12BB04470.26 BB04
0575y0d_I_DA57_DG58B12BB04280.32 BB04
0585y0d_I_DG58_DG59BB2BB07510.21 BB07
0595y0d_I_DG59_DC60BBBBB00830.22 BB00
0605y0d_I_DC60_DA61B12BB04860.20 BB04
0615y0d_I_DA61_DT62BBBBB00770.18 BB00
0625y0d_I_DT62_DG63BBBBB00800.22 BB00
0635y0d_I_DG63_DT64BBBBB01160.23 BB01
0645y0d_I_DT64_DT65A-BAB03920.27 AB03
0655y0d_I_DT65_DC66BBBBB00870.17 BB00
0665y0d_I_DC66_DA67BB2BB07830.23 BB07
0675y0d_I_DA67_DG68BBBBB00410.30 BB00
0685y0d_I_DG68_DC69BB2BB07770.26 BB07
0695y0d_I_DC69_DT70BBBBB00520.24 BB00
0705y0d_I_DT70_DG71BBBBB00780.23 BB00
0715y0d_I_DG71_DA72B12BB04810.12 BB04
0725y0d_I_DA72_DA73BBBBB00560.16 BB00
0735y0d_I_DA73_DT74BBBBB01790.15 BB01
0745y0d_I_DT74_DT75BBBBB00260.27 BB00
0755y0d_I_DT75_DC76BBBBB00800.17 BB00
0765y0d_I_DC76_DA77B12BB04480.33 BB04
0775y0d_I_DA77_DG78B12BB04250.43 BB04
0785y0d_I_DG78_DC79BB2BB07740.27 BB07
0795y0d_I_DC79_DT80B12BB04470.41 BB04
0805y0d_I_DT80_DG81BBBBB00640.44 BB00
0815y0d_I_DG81_DA82BBBBB00810.14 BB00
0825y0d_I_DA82_DA83BBBBB00910.13 BB00
0835y0d_I_DA83_DC84BBBBB00140.39 BB00
0845y0d_I_DC84_DA85BBBBB00320.40 BB00
0855y0d_I_DA85_DT86BBBBB00790.18 BB00
0865y0d_I_DT86_DG87BBBBB00550.25 BB00
0875y0d_I_DG87_DC88BB2BB07870.24 BB07
0885y0d_I_DC88_DC89B12BB04280.45 BB04
0895y0d_I_DC89_DT90BB2BB07610.24 BB07
0905y0d_I_DT90_DT91BBBBB01910.15 BB01
0915y0d_I_DT91_DT92BBBBB00700.17 BB00
0925y0d_I_DT92_DT93BBBBB00600.22 BB00
0935y0d_I_DT93_DG94BBBBB00570.25 BB00
0945y0d_I_DG94_DA95BBBBB00730.38 BB00
0955y0d_I_DA95_DT96BBBBB00420.23 BB00
0965y0d_I_DT96_DG97BBwBB02120.47 BB02
0975y0d_I_DG97_DG98BBBBB00520.37 BB00
0985y0d_I_DG98_DA99BB2BB07840.25 BB07
0995y0d_I_DA99_DG100BBBBB00130.30 BB00
1005y0d_I_DG100_DC101BB2BB08830.33 BB08
1015y0d_I_DC101_DA102NANNANT00.64 BB02
1025y0d_I_DA102_DG103BBBBB00620.36 BB00
1035y0d_I_DG103_DT104BBwBB02570.24 BB02
1045y0d_I_DT104_DT105miBBB15190.25 BB15
1055y0d_I_DT105_DT106BBBBB00840.20 BB00
1065y0d_I_DT106_DC107BBBBB00700.23 BB00
1075y0d_I_DC107_DC108BB2BB08580.37 BB08
1085y0d_I_DC108_DA109BB2BB07250.45 BB07
1095y0d_I_DA109_DA110BBBBB00570.27 BB00
1105y0d_I_DA110_DA111B-ABA08830.24 BA08
1115y0d_I_DA111_DT112A-BAB01190.26 AB01
1125y0d_I_DT112_DA113BBBBB00860.23 BB00
1135y0d_I_DA113_DC114BBBBB00670.22 BB00
1145y0d_I_DC114_DA115B12BB04640.19 BB04
1155y0d_I_DA115_DC116B-ABA05870.23 BA05
1165y0d_I_DC116_DT117A-BAB03700.41 AB03
1175y0d_I_DT117_DT118BBBBB00870.15 BB00
1185y0d_I_DT118_DT119BBBBB00760.20 BB00
1195y0d_I_DT119_DT120BBBBB00790.19 BB00
1205y0d_I_DT120_DG121B12BB04510.36 BB04
1215y0d_I_DG121_DG122BBBBB00590.37 BB00
1225y0d_I_DG122_DT123BBBBB01390.24 BB01
1235y0d_I_DT123_DA124A-BAB03700.20 AB03
1245y0d_I_DA124_DG125NANNANT00.38 BB11
1255y0d_I_DG125_DA126BBBBB00350.34 BB00
1265y0d_I_DA126_DA127BBBBB00850.17 BB00
1275y0d_I_DA127_DT128BBwBB02830.23 BB02
1285y0d_I_DT128_DC129BBBBB00380.30 BB00
1295y0d_I_DC129_DT130BB2BB07710.34 BB07
1305y0d_I_DT130_DG131NANNANT00.46 BB02
1315y0d_I_DG131_DC132NANNANT00.44 BB15
1325y0d_I_DC132_DA133BB2BB07730.21 BB07
1335y0d_I_DA133_DG134NANNANT00.54 BB05
1345y0d_I_DG134_DG135B-ABA08610.39 BA08
1355y0d_I_DG135_DT136A-BAB01630.34 AB01
1365y0d_I_DT136_DG137BBBBB01160.37 BB01
1375y0d_I_DG137_DG138BBBBB00750.35 BB00
1385y0d_I_DG138_DA139B12BB04480.19 BB04
1395y0d_I_DA139_DT140miBBB15480.32 BB15
1405y0d_I_DT140_DA141BBwBB02290.30 BB02
1415y0d_I_DA141_DT142BBBBB01770.27 BB01
1425y0d_I_DT142_DT143BBBBB00640.23 BB00
1435y0d_I_DT143_DG144BBBBB00780.25 BB00
1445y0d_I_DG144_DA145B12BB04240.18 BB04
1455y0d_I_DA145_DT146NANNANT00.30 BB02
1465y0d_J_DA147_DT148NANNANT00.45 BB13
1475y0d_J_DT148_DC149NANNANT00.66 BA10
1485y0d_J_DC149_DA150BBBBB00310.26 BB00
1495y0d_J_DA150_DA151B12BB0490.37 BB04
1505y0d_J_DA151_DT152BBBBB00570.19 BB00
1515y0d_J_DT152_DA153B12BB04760.15 BB04
1525y0d_J_DA153_DT154BBBBB00440.23 BB00
1535y0d_J_DT154_DC155BBBBB00810.21 BB00
1545y0d_J_DC155_DC156NANNANT00.35 BB02
1555y0d_J_DC156_DA157BBwBB11850.28 BB11
1565y0d_J_DA157_DC158NANNANT00.51 BB01
1575y0d_J_DC158_DC159B-ABA05340.34 BA05
1585y0d_J_DC159_DT160A-BAB01730.16 AB01
1595y0d_J_DT160_DG161B12BB04540.38 BB04
1605y0d_J_DG161_DC162miBBB10160.31 BB10
1615y0d_J_DC162_DA163BB2BB07570.30 BB07
1625y0d_J_DA163_DG164BBBBB00450.35 BB00
1635y0d_J_DG164_DA165BB2BB07890.17 BB07
1645y0d_J_DA165_DT166BBBBB00730.29 BB00
1655y0d_J_DT166_DT167BBBBB00820.16 BB00
1665y0d_J_DT167_DC168BBBBB00960.14 BB00
1675y0d_J_DC168_DT169BBBBB00220.19 BB00
1685y0d_J_DT169_DA170BBBBB00830.24 BB00
1695y0d_J_DA170_DC171B12BB04940.17 BB04
1705y0d_J_DC171_DC172BBBBB00910.20 BB00
1715y0d_J_DC172_DA173BB2BB08510.38 BB08
1725y0d_J_DA173_DA174BBBBB00680.26 BB00
1735y0d_J_DA174_DA175B12BB04840.19 BB04
1745y0d_J_DA175_DA176BBBBB00770.26 BB00
1755y0d_J_DA176_DG177BBBBB00930.14 BB00
1765y0d_J_DG177_DT178BBBBB00600.21 BB00
1775y0d_J_DT178_DG179BBBBB00710.25 BB00
1785y0d_J_DG179_DT180NANNANT00.31 BB02
1795y0d_J_DT180_DA181BBBBB01810.17 BB01
1805y0d_J_DA181_DT182BBBBB01540.19 BB01
1815y0d_J_DT182_DT183A-BAB03740.37 AB03
1825y0d_J_DT183_DT184BBBBB00910.16 BB00
1835y0d_J_DT184_DG185BB2BB07440.31 BB07
1845y0d_J_DG185_DG186BBBBB00470.32 BB00
1855y0d_J_DG186_DA187BB2BB07180.16 BB07
1865y0d_J_DA187_DA188B12BB04650.21 BB04
1875y0d_J_DA188_DA189BBBBB00690.22 BB00
1885y0d_J_DA189_DC190B-ABA10850.29 BA10
1895y0d_J_DC190_DT191A-BAB01170.57 AB01
1905y0d_J_DT191_DG192BB2BB07520.18 BB07
1915y0d_J_DG192_DC193miBBB15530.36 BB15
1925y0d_J_DC193_DT194NANNANT00.47 BB08
1935y0d_J_DT194_DC195NANNANT00.71 BB02
1945y0d_J_DC195_DC196NANNANT00.38 BA08
1955y0d_J_DC196_DA197BBBBB00790.30 BB00
1965y0d_J_DA197_DT198BBBBB01580.28 BB01
1975y0d_J_DT198_DC199BBBBB00230.29 BB00
1985y0d_J_DC199_DA200B-ABA01400.25 BA01
1995y0d_J_DA200_DA201A-BAB03810.26 AB03
2005y0d_J_DA201_DA202BBBBB00860.19 BB00
2015y0d_J_DA202_DA203B12BB04450.22 BB04
2025y0d_J_DA203_DG204B12BB04300.27 BB04
2035y0d_J_DG204_DG205BB2BB07870.17 BB07
2045y0d_J_DG205_DC206BBBBB00770.21 BB00
2055y0d_J_DC206_DA207B12BB04820.19 BB04
2065y0d_J_DA207_DT208BBBBB00860.16 BB00
2075y0d_J_DT208_DG209BBBBB00850.21 BB00
2085y0d_J_DG209_DT210BBBBB01170.23 BB01
2095y0d_J_DT210_DT211A-BAB03940.26 AB03
2105y0d_J_DT211_DC212BBBBB00890.22 BB00
2115y0d_J_DC212_DA213BB2BB07650.29 BB07
2125y0d_J_DA213_DG214BB2BB07590.27 BB07
2135y0d_J_DG214_DC215BBBBB00590.24 BB00
2145y0d_J_DC215_DT216BB2BB07430.26 BB07
2155y0d_J_DT216_DG217BBBBB00520.34 BB00
2165y0d_J_DG217_DA218BBBBB00620.20 BB00
2175y0d_J_DA218_DA219BBBBB00550.20 BB00
2185y0d_J_DA219_DT220BBBBB01790.17 BB01
2195y0d_J_DT220_DT221BBBBB00280.25 BB00
2205y0d_J_DT221_DC222BBBBB00810.19 BB00
2215y0d_J_DC222_DA223B12BB04800.21 BB04
2225y0d_J_DA223_DG224BB2BB07630.17 BB07
2235y0d_J_DG224_DC225BBBBB00530.30 BB00
2245y0d_J_DC225_DT226BB2BB07460.30 BB07
2255y0d_J_DT226_DG227BBBBB00750.30 BB00
2265y0d_J_DG227_DA228B12BB04760.24 BB04
2275y0d_J_DA228_DA229BBBBB00930.14 BB00
2285y0d_J_DA229_DC230BBBBB00180.24 BB00
2295y0d_J_DC230_DA231BBBBB00370.38 BB00
2305y0d_J_DA231_DT232BBBBB00830.17 BB00
2315y0d_J_DT232_DG233BBBBB00530.25 BB00
2325y0d_J_DG233_DC234BB2BB07780.24 BB07
2335y0d_J_DC234_DC235B12BB04290.35 BB04
2345y0d_J_DC235_DT236BB2BB07510.22 BB07
2355y0d_J_DT236_DT237BBBBB01660.30 BB01
2365y0d_J_DT237_DT238BBBBB00710.15 BB00
2375y0d_J_DT238_DT239BBBBB00620.20 BB00
2385y0d_J_DT239_DG240BBBBB00620.19 BB00
2395y0d_J_DG240_DA241BBBBB00780.28 BB00
2405y0d_J_DA241_DT242BBBBB00280.26 BB00
2415y0d_J_DT242_DG243BBwBB02180.44 BB02
2425y0d_J_DG243_DG244BBBBB00320.44 BB00
2435y0d_J_DG244_DA245BB2BB07840.20 BB07
2445y0d_J_DA245_DG246BBBBB00140.18 BB00
2455y0d_J_DG246_DC247BB2BB08830.37 BB08
2465y0d_J_DC247_DA248NANNANT00.56 BB02
2475y0d_J_DA248_DG249BBBBB00330.40 BB00
2485y0d_J_DG249_DT250BBwBB02540.24 BB02
2495y0d_J_DT250_DT251miBBB15160.28 BB15
2505y0d_J_DT251_DT252BBBBB00850.16 BB00
2515y0d_J_DT252_DC253BBBBB00700.25 BB00
2525y0d_J_DC253_DC254BB2BB08690.33 BB08
2535y0d_J_DC254_DA255B12BB04560.36 BB04
2545y0d_J_DA255_DA256BBBBB00840.18 BB00
2555y0d_J_DA256_DA257B-ABA08680.40 BA08
2565y0d_J_DA257_DT258BBBBB01570.21 BB01
2575y0d_J_DT258_DA259BBBBB00830.28 BB00
2585y0d_J_DA259_DC260BBBBB00540.29 BB00
2595y0d_J_DC260_DA261B12BB04790.15 BB04
2605y0d_J_DA261_DC262BBBBB01880.13 BB01
2615y0d_J_DC262_DT263BBBBB01730.15 BB01
2625y0d_J_DT263_DT264BBBBB00830.18 BB00
2635y0d_J_DT264_DT265BBBBB00720.24 BB00
2645y0d_J_DT265_DT266BBBBB00790.18 BB00
2655y0d_J_DT266_DG267BB2BB07720.32 BB07
2665y0d_J_DG267_DG268BBBBB00650.23 BB00
2675y0d_J_DG268_DT269B-ABA08540.33 BA08
2685y0d_J_DT269_DA270BBBBB00110.36 BB00
2695y0d_J_DA270_DG271BBBBB01450.31 BB01
2705y0d_J_DG271_DA272BBBBB00500.27 BB00
2715y0d_J_DA272_DA273BBBBB00900.14 BB00
2725y0d_J_DA273_DT274BBwBB02800.21 BB02
2735y0d_J_DT274_DC275BBBBB00320.19 BB00
2745y0d_J_DC275_DT276B12BB04720.34 BB04
2755y0d_J_DT276_DG277NANNANT00.56 BB08
2765y0d_J_DG277_DC278NANNANT00.56 BB15
2775y0d_J_DC278_DA279BB2BB07900.18 BB07
2785y0d_J_DA279_DG280NANNANT00.53 BB11
2795y0d_J_DG280_DG281B-ABA08620.41 BA08
2805y0d_J_DG281_DT282A-BAB01640.42 AB01
2815y0d_J_DT282_DG283B-ABA05450.35 BA05
2825y0d_J_DG283_DG284BBBBB00620.40 BB00
2835y0d_J_DG284_DA285B12BB04510.18 BB04
2845y0d_J_DA285_DT286miBBB15470.32 BB15
2855y0d_J_DT286_DA287NANNANT00.69 BB00
2865y0d_J_DA287_DT288BBBBB01680.28 BB01
2875y0d_J_DT288_DT289BBBBB00600.22 BB00
2885y0d_J_DT289_DG290BBBBB00840.23 BB00
2895y0d_J_DG290_DA291B12BB04310.20 BB04
2905y0d_J_DA291_DT292NANNANT00.30 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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