Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of a ssDNA bound to the inner DNA binding site of RAD52
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5xrz_L_DT1_DT2 | NAN | NANT | 0 | 0.79 |
| 02 | 5xrz_L_DT2_DT3 | NAN | NANT | 0 | 0.39 |
| 03 | 5xrz_L_DT3_DT4 | NAN | NANT | 0 | 0.38 |
| 04 | 5xrz_L_DT4_DT5 | NAN | NANT | 0 | 1.54 |
| 05 | 5xrz_L_DT5_DT6 | B12 | BB04 | 26 | 0.49 |
| 06 | 5xrz_L_DT6_DT7 | B-A | BA10 | 44 | 0.29 |
| 07 | 5xrz_L_DT7_DT8 | NAN | NANT | 0 | 1.37 |
| 08 | 5xrz_L_DT8_DT9 | NAN | NANT | 0 | 1.16 |
| 09 | 5xrz_L_DT9_DT10 | NAN | NANT | 0 | 0.65 |
| 10 | 5xrz_L_DT10_DT11 | miB | BB15 | 13 | 0.67 |
| 11 | 5xrz_L_DT11_DT12 | NAN | NANT | 0 | 0.64 |
| 12 | 5xrz_L_DT12_DT13 | NAN | NANT | 0 | 1.00 |
| 13 | 5xrz_L_DT13_DT14 | NAN | NANT | 0 | 0.67 |
| 14 | 5xrz_L_DT14_DT15 | NAN | NANT | 0 | 0.73 |
| 15 | 5xrz_L_DT15_DT16 | NAN | NANT | 0 | 0.96 |
| 16 | 5xrz_L_DT16_DT17 | NAN | NANT | 0 | 1.72 |
| 17 | 5xrz_L_DT17_DT18 | NAN | NANT | 0 | 0.59 |
| 18 | 5xrz_L_DT18_DC19 | BBB | BB00 | 50 | 0.32 |
| 19 | 5xrz_L_DC19_DC20 | NAN | NANT | 0 | 0.66 |
| 20 | 5xrz_L_DC20_DC21 | NAN | NANT | 0 | 1.21 |
| 21 | 5xrz_L_DC21_DT22 | NAN | NANT | 0 | 0.89 |
| 22 | 5xrz_L_DT22_DT23 | BBB | BB00 | 16 | 0.53 |
| 23 | 5xrz_L_DT23_DT24 | NAN | NANT | 0 | 0.55 |
| 24 | 5xrz_L_DT24_DT25 | NAN | NANT | 0 | 1.55 |
| 25 | 5xrz_L_DT25_DT26 | B-A | BA08 | 67 | 0.26 |
| 26 | 5xrz_L_DT26_DT27 | NAN | NANT | 0 | 0.32 |
| 27 | 5xrz_L_DT27_DT28 | NAN | NANT | 0 | 0.62 |
| 28 | 5xrz_L_DT28_DT29 | NAN | NANT | 0 | 1.24 |
| 29 | 5xrz_L_DT29_DT30 | NAN | NANT | 0 | 0.66 |
| 30 | 5xrz_L_DT30_DT31 | BBB | BB00 | 38 | 0.41 |
| 31 | 5xrz_L_DT31_DT32 | NAN | NANT | 0 | 0.55 |
| 32 | 5xrz_L_DT32_DT33 | NAN | NANT | 0 | 1.68 |
| 33 | 5xrz_L_DT33_DT34 | NAN | NANT | 0 | 0.62 |
| 34 | 5xrz_L_DT34_DT35 | NAN | NANT | 0 | 1.46 |
| 35 | 5xrz_L_DT35_DT36 | NAN | NANT | 0 | 0.99 |
| 36 | 5xrz_L_DT36_DT37 | NAN | NANT | 0 | 1.05 |
| 37 | 5xrz_L_DT37_DT38 | NAN | NANT | 0 | 0.53 |
| 38 | 5xrz_L_DT38_DT39 | NAN | NANT | 0 | 0.67 |
| 39 | 5xrz_L_DT39_DT40 | NAN | NANT | 0 | 0.89 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|