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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The mouse nucleosome structure containing H2A, H2B type3-A, H3mm7, and H4

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015xm1_I_DA1_DT2BBwBB03300.56 BB03
0025xm1_I_DT2_DC3NANNANT00.72 BB02
0035xm1_I_DC3_DA4BBwBB11570.44 BB11
0045xm1_I_DA4_DA5NANNANT00.43 BB10
0055xm1_I_DA5_DT6BBwBB02150.34 BB02
0065xm1_I_DT6_DA7B12BB04310.28 BB04
0075xm1_I_DA7_DT8BBBBB00870.14 BB00
0085xm1_I_DT8_DC9NANNANT00.71 BB02
0095xm1_I_DC9_DC10NANNANT00.82 BA10
0105xm1_I_DC10_DA11A-BAB05550.30 AB05
0115xm1_I_DA11_DC12miBBB15490.26 BB15
0125xm1_I_DC12_DC13BBwBB02360.31 BB02
0135xm1_I_DC13_DT14BBwBB17580.29 BB17
0145xm1_I_DT14_DG15BB2BB07280.41 BB07
0155xm1_I_DG15_DC16NANNANT00.43 BB07
0165xm1_I_DC16_DA17BB2BB07360.34 BB07
0175xm1_I_DA17_DG18BBBBB00350.35 BB00
0185xm1_I_DG18_DA19NANNANT00.57 BB12
0195xm1_I_DA19_DT20NANNANT00.67 BB02
0205xm1_I_DT20_DT21BBwBB02260.38 BB02
0215xm1_I_DT21_DC22BBBBB00130.27 BB00
0225xm1_I_DC22_DT23NANNANT00.30 BB02
0235xm1_I_DT23_DA24NANNANT00.41 BB11
0245xm1_I_DA24_DC25miBBB13650.38 BB13
0255xm1_I_DC25_DC26BBwBB16680.40 BB16
0265xm1_I_DC26_DA27BB2BB07470.29 BB07
0275xm1_I_DA27_DA28BBBBB00620.23 BB00
0285xm1_I_DA28_DA29NANNANT00.98 OP24
0295xm1_I_DA29_DA30B12BB04570.38 BB04
0305xm1_I_DA30_DG31BBBBB00790.25 BB00
0315xm1_I_DG31_DT32BBwBB02450.22 BB02
0325xm1_I_DT32_DG33BBBBB00670.22 BB00
0335xm1_I_DG33_DT34miBBB13500.31 BB13
0345xm1_I_DT34_DA35BBBBB00470.30 BB00
0355xm1_I_DA35_DT36BBBBB0090.30 BB00
0365xm1_I_DT36_DT37A-BAB03770.32 AB03
0375xm1_I_DT37_DT38NANNANT00.39 BB10
0385xm1_I_DT38_DG39A-BAB03600.31 AB03
0395xm1_I_DG39_DG40BBwBB11560.53 BB11
0405xm1_I_DG40_DA41NANNANT00.79 BB02
0415xm1_I_DA41_DA42NANNANT00.48 BB13
0425xm1_I_DA42_DA43BBwBB02340.42 BB02
0435xm1_I_DA43_DC44NANNANT00.45 BB02
0445xm1_I_DC44_DT45miBBB12260.45 BB12
0455xm1_I_DT45_DG46NANNANT00.51 BB03
0465xm1_I_DG46_DC47NANNANT00.57 BB02
0475xm1_I_DC47_DT48NANNANT00.78 BB02
0485xm1_I_DT48_DC49NANNANT00.38 BB10
0495xm1_I_DC49_DC50BBwBB02280.40 BB02
0505xm1_I_DC50_DA51B-ABA05320.41 BA05
0515xm1_I_DA51_DT52NANNANT00.82 BB02
0525xm1_I_DT52_DC53BBBBB00480.55 BB00
0535xm1_I_DC53_DA54miBBB10310.44 BB10
0545xm1_I_DA54_DA55miBBB13280.62 BB13
0555xm1_I_DA55_DA56NANNANT00.64 BB03
0565xm1_I_DA56_DA57BBBBB00180.30 BB00
0575xm1_I_DA57_DG58NANNANT00.43 BB12
0585xm1_I_DG58_DG59A-BAB05220.43 AB05
0595xm1_I_DG59_DC60B12BB04630.23 BB04
0605xm1_I_DC60_DA61miBBB15450.31 BB15
0615xm1_I_DA61_DT62BBBBB00200.35 BB00
0625xm1_I_DT62_DG63B-ABA08880.24 BA08
0635xm1_I_DG63_DT64A-BAB01560.30 AB01
0645xm1_I_DT64_DT65BBwBB02530.33 BB02
0655xm1_I_DT65_DC66BBBBB00170.23 BB00
0665xm1_I_DC66_DA67BB2BB07430.24 BB07
0675xm1_I_DA67_DG68BBBBB00590.21 BB00
0685xm1_I_DG68_DC69BB2BB07780.20 BB07
0695xm1_I_DC69_DT70B12BB04870.22 BB04
0705xm1_I_DT70_DG71BBwBB02550.28 BB02
0715xm1_I_DG71_DA72B-ABA08360.52 BA08
0725xm1_I_DA72_DA73BBBBB00200.19 BB00
0735xm1_I_DA73_DT74BBwBB02880.20 BB02
0745xm1_I_DT74_DT75BBBBB00220.21 BB00
0755xm1_I_DT75_DC76BBBBB00690.10 BB00
0765xm1_I_DC76_DA77BB2BB07810.29 BB07
0775xm1_I_DA77_DG78BBBBB00700.24 BB00
0785xm1_I_DG78_DC79BB2BB07580.27 BB07
0795xm1_I_DC79_DT80B12BB04610.39 BB04
0805xm1_I_DT80_DG81B12BB04550.24 BB04
0815xm1_I_DG81_DA82BBBBB00780.19 BB00
0825xm1_I_DA82_DA83B-ABA05760.26 BA05
0835xm1_I_DA83_DC84B-ABA05180.33 BA05
0845xm1_I_DC84_DA85NANNANT00.33 AB03
0855xm1_I_DA85_DT86BBwBB02690.20 BB02
0865xm1_I_DT86_DG87BBBBB00410.33 BB00
0875xm1_I_DG87_DC88NANNANT00.45 BB07
0885xm1_I_DC88_DC89BBBBB00450.22 BB00
0895xm1_I_DC89_DT90BB2BB07600.22 BB07
0905xm1_I_DT90_DT91BBBBB00390.19 BB00
0915xm1_I_DT91_DT92BBBBB00250.17 BB00
0925xm1_I_DT92_DT93NANNANT00.25 BB15
0935xm1_I_DT93_DG94miBBB10740.26 BB10
0945xm1_I_DG94_DA95miBBB10400.48 BB10
0955xm1_I_DA95_DT96BBBBB00780.25 BB00
0965xm1_I_DT96_DG97B12BB04830.15 BB04
0975xm1_I_DG97_DG98BBBBB00550.21 BB00
0985xm1_I_DG98_DA99BB2BB07820.25 BB07
0995xm1_I_DA99_DG100NANNANT00.43 BB10
1005xm1_I_DG100_DC101BB2BB07410.36 BB07
1015xm1_I_DC101_DA102BBBBB00350.34 BB00
1025xm1_I_DA102_DG103B12BB04200.30 BB04
1035xm1_I_DG103_DT104B-ABA10470.38 BA10
1045xm1_I_DT104_DT105NANNANT00.40 AA01
1055xm1_I_DT105_DT106A-BAB01170.47 AB01
1065xm1_I_DT106_DC107BBBBB00590.22 BB00
1075xm1_I_DC107_DC108BBwBB11300.53 BB11
1085xm1_I_DC108_DA109BBBBB00440.43 BB00
1095xm1_I_DA109_DA110BBBBB00340.17 BB00
1105xm1_I_DA110_DA111B12BB04260.21 BB04
1115xm1_I_DA111_DT112BBBBB00550.31 BB00
1125xm1_I_DT112_DA113BBBBB00820.14 BB00
1135xm1_I_DA113_DC114miBBB13660.34 BB13
1145xm1_I_DC114_DA115BBBBB00360.46 BB00
1155xm1_I_DA115_DC116B12BB05540.31 BB05
1165xm1_I_DC116_DT117BBBBB00640.26 BB00
1175xm1_I_DT117_DT118BBBBB01380.20 BB01
1185xm1_I_DT118_DT119BBBBB01350.34 BB01
1195xm1_I_DT119_DT120BBBBB00520.36 BB00
1205xm1_I_DT120_DG121BBBBB00680.36 BB00
1215xm1_I_DG121_DG122BBBBB00740.26 BB00
1225xm1_I_DG122_DT123BBwBB02590.34 BB02
1235xm1_I_DT123_DA124B12BB04240.58 BB04
1245xm1_I_DA124_DG125BBwBB11530.32 BB11
1255xm1_I_DG125_DA126NANNANT00.68 IC06
1265xm1_I_DA126_DA127BBBBB00580.35 BB00
1275xm1_I_DA127_DT128miBBB13100.47 BB13
1285xm1_I_DT128_DC129NANNANT00.56 BB16
1295xm1_I_DC129_DT130NANNANT00.39 BB07
1305xm1_I_DT130_DG131BBwBB0280.37 BB02
1315xm1_I_DG131_DC132NANNANT00.40 BA17
1325xm1_I_DC132_DA133NANNANT00.62 BB16
1335xm1_I_DA133_DG134A-BAB03170.47 AB03
1345xm1_I_DG134_DG135NANNANT00.32 BB10
1355xm1_I_DG135_DT136NANNANT00.52 BB03
1365xm1_I_DT136_DG137BBBBB01140.47 BB01
1375xm1_I_DG137_DG138A-BAB03300.41 AB03
1385xm1_I_DG138_DA139BBwBB11860.25 BB11
1395xm1_I_DA139_DT140NANNANT00.48 BB02
1405xm1_I_DT140_DA141BBBBB00760.20 BB00
1415xm1_I_DA141_DT142BBBBB00890.21 BB00
1425xm1_I_DT142_DT143BBBBB00860.18 BB00
1435xm1_I_DT143_DG144B-ABA08800.26 BA08
1445xm1_I_DG144_DA145A-BAB01160.38 AB01
1455xm1_I_DA145_DT146NANNANT01.03 IC03
1465xm1_J_DA147_DT148BBwBB03490.50 BB03
1475xm1_J_DT148_DC149miBBB10680.24 BB10
1485xm1_J_DC149_DA150NANNANT00.37 BB02
1495xm1_J_DA150_DA151BBBBB00350.28 BB00
1505xm1_J_DA151_DT152miBBB12630.42 BB12
1515xm1_J_DT152_DA153NANNANT00.83 BA10
1525xm1_J_DA153_DT154BBwBB02260.32 BB02
1535xm1_J_DT154_DC155NANNANT00.49 BA05
1545xm1_J_DC155_DC156BBBBB01580.29 BB01
1555xm1_J_DC156_DA157NANNANT00.41 BB05
1565xm1_J_DA157_DC158NANNANT00.40 BB10
1575xm1_J_DC158_DC159BBwBB02130.28 BB02
1585xm1_J_DC159_DT160NANNANT00.62 BA08
1595xm1_J_DT160_DG161A-BAB01450.24 AB01
1605xm1_J_DG161_DC162NANNANT00.55 BB02
1615xm1_J_DC162_DA163NANNANT00.51 BB04
1625xm1_J_DA163_DG164BB2BB07240.41 BB07
1635xm1_J_DG164_DA165NANNANT00.41 BB05
1645xm1_J_DA165_DT166BBwBB02510.32 BB02
1655xm1_J_DT166_DT167BBBBB00400.33 BB00
1665xm1_J_DT167_DC168BBBBB00650.25 BB00
1675xm1_J_DC168_DT169BBwBB02470.31 BB02
1685xm1_J_DT169_DA170NANNANT00.49 BB01
1695xm1_J_DA170_DC171NANNANT00.55 BB02
1705xm1_J_DC171_DC172NANNANT00.32 BB03
1715xm1_J_DC172_DA173NANNANT00.62 BB03
1725xm1_J_DA173_DA174NANNANT00.65 BB16
1735xm1_J_DA174_DA175NANNANT00.63 BB02
1745xm1_J_DA175_DA176BBBBB00380.42 BB00
1755xm1_J_DA176_DG177B12BB04640.20 BB04
1765xm1_J_DG177_DT178BBBBB00530.30 BB00
1775xm1_J_DT178_DG179BBBBB00650.19 BB00
1785xm1_J_DG179_DT180BBwBB02520.22 BB02
1795xm1_J_DT180_DA181BBBBB00610.21 BB00
1805xm1_J_DA181_DT182BBwBB02610.31 BB02
1815xm1_J_DT182_DT183miBBB15320.30 BB15
1825xm1_J_DT183_DT184BBBBB00200.26 BB00
1835xm1_J_DT184_DG185BB2BB07440.47 BB07
1845xm1_J_DG185_DG186BBBBB00190.34 BB00
1855xm1_J_DG186_DA187BB2BB07750.40 BB07
1865xm1_J_DA187_DA188BBBBB00860.18 BB00
1875xm1_J_DA188_DA189BBBBB00900.14 BB00
1885xm1_J_DA189_DC190miBBB13560.34 BB13
1895xm1_J_DC190_DT191BBwBB16390.53 BB16
1905xm1_J_DT191_DG192B12BB04520.37 BB04
1915xm1_J_DG192_DC193miBBB15430.41 BB15
1925xm1_J_DC193_DT194BB2BB08260.49 BB08
1935xm1_J_DT194_DC195NANNANT00.63 BB15
1945xm1_J_DC195_DC196NANNANT00.35 BB07
1955xm1_J_DC196_DA197BBBBB00450.26 BB00
1965xm1_J_DA197_DT198miBBB15670.21 BB15
1975xm1_J_DT198_DC199miBBB15620.28 BB15
1985xm1_J_DC199_DA200BBBBB00670.25 BB00
1995xm1_J_DA200_DA201NANNANT00.39 BB02
2005xm1_J_DA201_DA202BBBBB00370.32 BB00
2015xm1_J_DA202_DA203B12BB04200.31 BB04
2025xm1_J_DA203_DG204BB2BB07350.28 BB07
2035xm1_J_DG204_DG205BB2BB07400.23 BB07
2045xm1_J_DG205_DC206BBwBB02260.34 BB02
2055xm1_J_DC206_DA207NANNANT00.41 BA08
2065xm1_J_DA207_DT208BBBBB00620.19 BB00
2075xm1_J_DT208_DG209BBBBB00180.26 BB00
2085xm1_J_DG209_DT210NANNANT00.47 BB17
2095xm1_J_DT210_DT211BBwBB02260.33 BB02
2105xm1_J_DT211_DC212BBwBB02270.40 BB02
2115xm1_J_DC212_DA213BBBBB00350.32 BB00
2125xm1_J_DA213_DG214BB2BB07640.28 BB07
2135xm1_J_DG214_DC215BBBBB00130.20 BB00
2145xm1_J_DC215_DT216BB2BB07680.23 BB07
2155xm1_J_DT216_DG217BBBBB00340.38 BB00
2165xm1_J_DG217_DA218BBBBB00540.28 BB00
2175xm1_J_DA218_DA219miBBB10260.26 BB10
2185xm1_J_DA219_DT220NANNANT00.46 BB10
2195xm1_J_DT220_DT221BBBBB00290.21 BB00
2205xm1_J_DT221_DC222BBBBB00780.17 BB00
2215xm1_J_DC222_DA223BBBBB00140.51 BB00
2225xm1_J_DA223_DG224BB2BB07270.36 BB07
2235xm1_J_DG224_DC225B12BB04310.39 BB04
2245xm1_J_DC225_DT226BB2BB07530.23 BB07
2255xm1_J_DT226_DG227B12BB04430.46 BB04
2265xm1_J_DG227_DA228B12BB04700.26 BB04
2275xm1_J_DA228_DA229BBBBB00800.24 BB00
2285xm1_J_DA229_DC230BBwBB02340.21 BB02
2295xm1_J_DC230_DA231B12BB04290.36 BB04
2305xm1_J_DA231_DT232BBBBB00650.28 BB00
2315xm1_J_DT232_DG233BBBBB00810.19 BB00
2325xm1_J_DG233_DC234B12BB04710.24 BB04
2335xm1_J_DC234_DC235B12BB04680.26 BB04
2345xm1_J_DC235_DT236BB2BB07750.17 BB07
2355xm1_J_DT236_DT237B12BB04920.14 BB04
2365xm1_J_DT237_DT238miBBB15620.26 BB15
2375xm1_J_DT238_DT239NANNANT00.51 BB08
2385xm1_J_DT239_DG240NANNANT00.59 BB10
2395xm1_J_DG240_DA241miBBB12220.41 BB12
2405xm1_J_DA241_DT242NANNANT00.66 BB02
2415xm1_J_DT242_DG243NANNANT00.34 BB10
2425xm1_J_DG243_DG244BB2BB07320.29 BB07
2435xm1_J_DG244_DA245BBBBB00790.23 BB00
2445xm1_J_DA245_DG246BB2BB07420.39 BB07
2455xm1_J_DG246_DC247miBBB15390.37 BB15
2465xm1_J_DC247_DA248NANNANT00.68 BB08
2475xm1_J_DA248_DG249BBwBB02650.23 BB02
2485xm1_J_DG249_DT250BBwBB02240.34 BB02
2495xm1_J_DT250_DT251NANNANT00.46 BB02
2505xm1_J_DT251_DT252NANNANT00.47 BB10
2515xm1_J_DT252_DC253NANNANT00.51 BB12
2525xm1_J_DC253_DC254NANNANT00.66 BB03
2535xm1_J_DC254_DA255BB2BB07660.28 BB07
2545xm1_J_DA255_DA256BBBBB00710.32 BB00
2555xm1_J_DA256_DA257BBBBB00800.20 BB00
2565xm1_J_DA257_DT258BBwBB02350.31 BB02
2575xm1_J_DT258_DA259BBBBB00530.31 BB00
2585xm1_J_DA259_DC260miBBB15550.28 BB15
2595xm1_J_DC260_DA261NANNANT00.38 BB04
2605xm1_J_DA261_DC262BBwBB02470.30 BB02
2615xm1_J_DC262_DT263miBBB10270.37 BB10
2625xm1_J_DT263_DT264miBBB13390.31 BB13
2635xm1_J_DT264_DT265NANNANT00.50 BB15
2645xm1_J_DT265_DT266NANNANT00.33 BB13
2655xm1_J_DT266_DG267NANNANT00.69 BB07
2665xm1_J_DG267_DG268NANNANT00.29 BB15
2675xm1_J_DG268_DT269NANNANT00.48 BA08
2685xm1_J_DT269_DA270BBBBB00620.42 BB00
2695xm1_J_DA270_DG271BBBBB00570.29 BB00
2705xm1_J_DG271_DA272miBBB13420.42 BB13
2715xm1_J_DA272_DA273BBwBB16680.43 BB16
2725xm1_J_DA273_DT274B12BB04460.34 BB04
2735xm1_J_DT274_DC275B12BB05720.32 BB05
2745xm1_J_DC275_DT276NANNANT00.66 BB02
2755xm1_J_DT276_DG277NANNANT00.53 BB08
2765xm1_J_DG277_DC278BBBBB00320.56 BB00
2775xm1_J_DC278_DA279BB2BB07360.30 BB07
2785xm1_J_DA279_DG280NANNANT00.52 BB10
2795xm1_J_DG280_DG281NANNANT00.57 BB11
2805xm1_J_DG281_DT282BBwBB16190.71 BB16
2815xm1_J_DT282_DG283NANNANT00.32 BB02
2825xm1_J_DG283_DG284NANNANT00.46 BA13
2835xm1_J_DG284_DA285A-BAB05870.15 AB05
2845xm1_J_DA285_DT286NANNANT00.58 BB10
2855xm1_J_DT286_DA287NANNANT00.52 BB03
2865xm1_J_DA287_DT288BBBBB00230.31 BB00
2875xm1_J_DT288_DT289BBwBB02770.23 BB02
2885xm1_J_DT289_DG290BBBBB00500.37 BB00
2895xm1_J_DG290_DA291B12BB04790.24 BB04
2905xm1_J_DA291_DT292BBBBB00930.16 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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