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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015xm0_I_DA1_DT2NANNANT00.49 BB04
0025xm0_I_DT2_DC3NANNANT00.72 BB02
0035xm0_I_DC3_DA4NANNANT00.54 BB17
0045xm0_I_DA4_DA5B12BB04310.28 BB04
0055xm0_I_DA5_DT6BBBBB00340.32 BB00
0065xm0_I_DT6_DA7B12BB04290.21 BB04
0075xm0_I_DA7_DT8BBBBB00900.19 BB00
0085xm0_I_DT8_DC9NANNANT00.58 BB02
0095xm0_I_DC9_DC10BBBBB00330.54 BB00
0105xm0_I_DC10_DA11BBBBB00740.27 BB00
0115xm0_I_DA11_DC12BBBBB00400.20 BB00
0125xm0_I_DC12_DC13BBwBB02340.35 BB02
0135xm0_I_DC13_DT14BBBBB00120.34 BB00
0145xm0_I_DT14_DG15BB2BB07120.47 BB07
0155xm0_I_DG15_DC16BB2BB07230.35 BB07
0165xm0_I_DC16_DA17BB2BB07540.35 BB07
0175xm0_I_DA17_DG18B-ABA05470.38 BA05
0185xm0_I_DG18_DA19BBBBB01110.38 BB01
0195xm0_I_DA19_DT20A-BAB03890.22 AB03
0205xm0_I_DT20_DT21BBwBB02170.22 BB02
0215xm0_I_DT21_DC22NANNANT00.25 BB00
0225xm0_I_DC22_DT23BBwBB02640.21 BB02
0235xm0_I_DT23_DA24BBwBB02260.34 BB02
0245xm0_I_DA24_DC25NANNANT00.46 BB03
0255xm0_I_DC25_DC26NANNANT00.32 BB17
0265xm0_I_DC26_DA27BB2BB07500.34 BB07
0275xm0_I_DA27_DA28BBBBB00260.17 BB00
0285xm0_I_DA28_DA29NANNANT00.43 BB11
0295xm0_I_DA29_DA30NANNANT00.35 BB15
0305xm0_I_DA30_DG31BBBBB00810.20 BB00
0315xm0_I_DG31_DT32miBBB15820.15 BB15
0325xm0_I_DT32_DG33B-ABA01450.18 BA01
0335xm0_I_DG33_DT34NANNANT00.39 BA10
0345xm0_I_DT34_DA35A-BAB05540.29 AB05
0355xm0_I_DA35_DT36NANNANT00.56 BB03
0365xm0_I_DT36_DT37NANNANT00.59 BB02
0375xm0_I_DT37_DT38NANNANT00.35 BB10
0385xm0_I_DT38_DG39BBBBB00240.49 BB00
0395xm0_I_DG39_DG40NANNANT00.53 BB08
0405xm0_I_DG40_DA41A-BAB03640.39 AB03
0415xm0_I_DA41_DA42NANNANT00.32 BB03
0425xm0_I_DA42_DA43NANNANT00.34 BB10
0435xm0_I_DA43_DC44BBwBB02500.23 BB02
0445xm0_I_DC44_DT45miBBB12200.53 BB12
0455xm0_I_DT45_DG46NANNANT00.58 BB03
0465xm0_I_DG46_DC47NANNANT00.57 BB02
0475xm0_I_DC47_DT48NANNANT00.72 BB02
0485xm0_I_DT48_DC49B-ABA17450.38 BA17
0495xm0_I_DC49_DC50BBwBB11330.19 BB11
0505xm0_I_DC50_DA51BBBBB00330.41 BB00
0515xm0_I_DA51_DT52NANNANT00.50 BB02
0525xm0_I_DT52_DC53NANNANT00.57 BA10
0535xm0_I_DC53_DA54NANNANT00.67 BB00
0545xm0_I_DA54_DA55miBBB12210.50 BB12
0555xm0_I_DA55_DA56NANNANT00.83 BB13
0565xm0_I_DA56_DA57miBBB10690.28 BB10
0575xm0_I_DA57_DG58NANNANT00.37 BB12
0585xm0_I_DG58_DG59NANNANT00.40 BB16
0595xm0_I_DG59_DC60B12BB04760.23 BB04
0605xm0_I_DC60_DA61B12BB04720.28 BB04
0615xm0_I_DA61_DT62miBBB15680.20 BB15
0625xm0_I_DT62_DG63BBBBB00810.21 BB00
0635xm0_I_DG63_DT64NANNANT00.29 BB15
0645xm0_I_DT64_DT65BBBBB00640.18 BB00
0655xm0_I_DT65_DC66BBBBB00380.26 BB00
0665xm0_I_DC66_DA67BB2BB07690.22 BB07
0675xm0_I_DA67_DG68BBBBB00490.26 BB00
0685xm0_I_DG68_DC69BB2BB07240.25 BB07
0695xm0_I_DC69_DT70BBBBB00700.27 BB00
0705xm0_I_DT70_DG71BBBBB00740.23 BB00
0715xm0_I_DG71_DA72B12BB04130.15 BB04
0725xm0_I_DA72_DA73BBBBB00570.14 BB00
0735xm0_I_DA73_DT74BBwBB02630.20 BB02
0745xm0_I_DT74_DT75BBwBB02630.19 BB02
0755xm0_I_DT75_DC76BBBBB00580.26 BB00
0765xm0_I_DC76_DA77BB2BB07910.26 BB07
0775xm0_I_DA77_DG78BBBBB00550.27 BB00
0785xm0_I_DG78_DC79BB2BB07670.29 BB07
0795xm0_I_DC79_DT80BBBBB00480.29 BB00
0805xm0_I_DT80_DG81B12BB04620.20 BB04
0815xm0_I_DG81_DA82BBBBB00850.18 BB00
0825xm0_I_DA82_DA83BBBBB00870.13 BB00
0835xm0_I_DA83_DC84BBBBB00320.23 BB00
0845xm0_I_DC84_DA85B12BB04730.18 BB04
0855xm0_I_DA85_DT86BBBBB00900.19 BB00
0865xm0_I_DT86_DG87BBBBB00820.19 BB00
0875xm0_I_DG87_DC88BB2BB07510.37 BB07
0885xm0_I_DC88_DC89NANNANT00.36 BB10
0895xm0_I_DC89_DT90BB2BB07160.28 BB07
0905xm0_I_DT90_DT91BBwBB02300.26 BB02
0915xm0_I_DT91_DT92miBBB15360.33 BB15
0925xm0_I_DT92_DT93B12BB04430.35 BB04
0935xm0_I_DT93_DG94BBBBB00140.26 BB00
0945xm0_I_DG94_DA95B12BB04750.14 BB04
0955xm0_I_DA95_DT96BBBBB01170.32 BB01
0965xm0_I_DT96_DG97BBBBB00220.41 BB00
0975xm0_I_DG97_DG98BBBBB00700.24 BB00
0985xm0_I_DG98_DA99BB2BB07860.30 BB07
0995xm0_I_DA99_DG100miBBB15400.47 BB15
1005xm0_I_DG100_DC101NANNANT00.69 BA16
1015xm0_I_DC101_DA102BBBBB00200.46 BB00
1025xm0_I_DA102_DG103B12BB04870.12 BB04
1035xm0_I_DG103_DT104NANNANT00.39 BB02
1045xm0_I_DT104_DT105NANNANT00.47 BB02
1055xm0_I_DT105_DT106BBBBB00830.23 BB00
1065xm0_I_DT106_DC107BBBBB00460.32 BB00
1075xm0_I_DC107_DC108NANNANT00.59 BB08
1085xm0_I_DC108_DA109BBBBB00160.50 BB00
1095xm0_I_DA109_DA110BBBBB00860.17 BB00
1105xm0_I_DA110_DA111NANNANT00.39 BA01
1115xm0_I_DA111_DT112A-BAB01670.26 AB01
1125xm0_I_DT112_DA113BBwBB02770.25 BB02
1135xm0_I_DA113_DC114B-ABA09280.47 BA09
1145xm0_I_DC114_DA115A-BAB03140.48 AB03
1155xm0_I_DA115_DC116BBwBB02710.22 BB02
1165xm0_I_DC116_DT117BBBBB00440.25 BB00
1175xm0_I_DT117_DT118B12BB04510.38 BB04
1185xm0_I_DT118_DT119BB2BB07210.38 BB07
1195xm0_I_DT119_DT120BBBBB00100.29 BB00
1205xm0_I_DT120_DG121B12BB04600.29 BB04
1215xm0_I_DG121_DG122B12BB04860.19 BB04
1225xm0_I_DG122_DT123BBBBB01650.10 BB01
1235xm0_I_DT123_DA124BBBBB00160.28 BB00
1245xm0_I_DA124_DG125NANNANT00.34 BB11
1255xm0_I_DG125_DA126NANNANT00.58 BB03
1265xm0_I_DA126_DA127A-BAB04590.32 AB04
1275xm0_I_DA127_DT128miBBB13340.41 BB13
1285xm0_I_DT128_DC129NANNANT00.60 BB02
1295xm0_I_DC129_DT130BBBBB00100.41 BB00
1305xm0_I_DT130_DG131NANNANT00.43 BB02
1315xm0_I_DG131_DC132NANNANT00.50 BB10
1325xm0_I_DC132_DA133BBBBB00160.52 BB00
1335xm0_I_DA133_DG134BBwBB02150.56 BB02
1345xm0_I_DG134_DG135NANNANT00.30 BA05
1355xm0_I_DG135_DT136NANNANT00.56 AA04
1365xm0_I_DT136_DG137A-BAB03190.53 AB03
1375xm0_I_DG137_DG138NANNANT00.40 AB03
1385xm0_I_DG138_DA139BBwBB11920.20 BB11
1395xm0_I_DA139_DT140NANNANT00.32 BB15
1405xm0_I_DT140_DA141BBBBB00650.15 BB00
1415xm0_I_DA141_DT142BBwBB02790.18 BB02
1425xm0_I_DT142_DT143BBBBB00470.28 BB00
1435xm0_I_DT143_DG144B12BB04720.13 BB04
1445xm0_I_DG144_DA145BBBBB00780.22 BB00
1455xm0_I_DA145_DT146NANNANT01.00 IC03
1465xm0_J_DA147_DT148NANNANT00.59 BB00
1475xm0_J_DT148_DC149NANNANT00.79 BB02
1485xm0_J_DC149_DA150NANNANT00.54 BB02
1495xm0_J_DA150_DA151NANNANT00.35 BB00
1505xm0_J_DA151_DT152BBBBB00650.23 BB00
1515xm0_J_DT152_DA153NANNANT00.46 BB05
1525xm0_J_DA153_DT154BBBBB00630.24 BB00
1535xm0_J_DT154_DC155BBBBB00710.29 BB00
1545xm0_J_DC155_DC156BBBBB00370.28 BB00
1555xm0_J_DC156_DA157BBwBB02770.38 BB02
1565xm0_J_DA157_DC158BBBBB00520.30 BB00
1575xm0_J_DC158_DC159BBBBB00540.22 BB00
1585xm0_J_DC159_DT160BBBBB00660.25 BB00
1595xm0_J_DT160_DG161NANNANT00.55 BB00
1605xm0_J_DG161_DC162NANNANT00.69 BB02
1615xm0_J_DC162_DA163BBBBB00150.56 BB00
1625xm0_J_DA163_DG164BB2BB07610.36 BB07
1635xm0_J_DG164_DA165NANNANT00.49 BA10
1645xm0_J_DA165_DT166NANNANT00.45 BB02
1655xm0_J_DT166_DT167BBBBB01730.32 BB01
1665xm0_J_DT167_DC168BBBBB00620.17 BB00
1675xm0_J_DC168_DT169BBBBB00620.30 BB00
1685xm0_J_DT169_DA170BBBBB00450.35 BB00
1695xm0_J_DA170_DC171NANNANT00.40 BB02
1705xm0_J_DC171_DC172NANNANT00.50 BB03
1715xm0_J_DC172_DA173NANNANT00.71 BB03
1725xm0_J_DA173_DA174NANNANT00.51 BA17
1735xm0_J_DA174_DA175B12BB05420.25 BB05
1745xm0_J_DA175_DA176BBBBB00390.36 BB00
1755xm0_J_DA176_DG177BBBBB00910.22 BB00
1765xm0_J_DG177_DT178BBwBB02610.24 BB02
1775xm0_J_DT178_DG179BBBBB00440.23 BB00
1785xm0_J_DG179_DT180NANNANT00.29 BB15
1795xm0_J_DT180_DA181BBBBB00490.18 BB00
1805xm0_J_DA181_DT182NANNANT00.44 BB02
1815xm0_J_DT182_DT183BBwBB02110.32 BB02
1825xm0_J_DT183_DT184BBBBB00350.26 BB00
1835xm0_J_DT184_DG185BB2BB07650.26 BB07
1845xm0_J_DG185_DG186BBBBB00430.36 BB00
1855xm0_J_DG186_DA187BB2BB07890.29 BB07
1865xm0_J_DA187_DA188BBBBB00920.15 BB00
1875xm0_J_DA188_DA189BBBBB00480.15 BB00
1885xm0_J_DA189_DC190miBBB13440.31 BB13
1895xm0_J_DC190_DT191BBBBB00220.52 BB00
1905xm0_J_DT191_DG192B12BB04720.28 BB04
1915xm0_J_DG192_DC193NANNANT00.40 BB02
1925xm0_J_DC193_DT194NANNANT00.44 BB08
1935xm0_J_DT194_DC195miBBB15400.63 BB15
1945xm0_J_DC195_DC196BB2BB07410.26 BB07
1955xm0_J_DC196_DA197miBBB15400.32 BB15
1965xm0_J_DA197_DT198BBwBB02400.23 BB02
1975xm0_J_DT198_DC199BBBBB00440.21 BB00
1985xm0_J_DC199_DA200BBBBB00410.29 BB00
1995xm0_J_DA200_DA201BBBBB00820.13 BB00
2005xm0_J_DA201_DA202B12BB04680.17 BB04
2015xm0_J_DA202_DA203BBBBB00670.18 BB00
2025xm0_J_DA203_DG204B12BB04520.30 BB04
2035xm0_J_DG204_DG205BB2BB07750.24 BB07
2045xm0_J_DG205_DC206BBwBB02120.35 BB02
2055xm0_J_DC206_DA207BBBBB00650.35 BB00
2065xm0_J_DA207_DT208miBBB15520.16 BB15
2075xm0_J_DT208_DG209BBwBB02760.29 BB02
2085xm0_J_DG209_DT210BBBBB00590.23 BB00
2095xm0_J_DT210_DT211BBBBB00720.17 BB00
2105xm0_J_DT211_DC212BBBBB01780.23 BB01
2115xm0_J_DC212_DA213BBBBB00410.34 BB00
2125xm0_J_DA213_DG214BB2BB07680.31 BB07
2135xm0_J_DG214_DC215BBBBB00720.23 BB00
2145xm0_J_DC215_DT216BB2BB07600.24 BB07
2155xm0_J_DT216_DG217BBBBB00350.38 BB00
2165xm0_J_DG217_DA218B12BB04640.28 BB04
2175xm0_J_DA218_DA219B12BB05640.22 BB05
2185xm0_J_DA219_DT220BBBBB00310.43 BB00
2195xm0_J_DT220_DT221BBBBB00640.20 BB00
2205xm0_J_DT221_DC222BBBBB00480.21 BB00
2215xm0_J_DC222_DA223B12BB04670.24 BB04
2225xm0_J_DA223_DG224BB2BB07550.18 BB07
2235xm0_J_DG224_DC225B12BB04570.40 BB04
2245xm0_J_DC225_DT226BB2BB07710.21 BB07
2255xm0_J_DT226_DG227B12BB04630.40 BB04
2265xm0_J_DG227_DA228B12BB04490.32 BB04
2275xm0_J_DA228_DA229BBBBB00890.17 BB00
2285xm0_J_DA229_DC230NANNANT00.33 BA10
2295xm0_J_DC230_DA231NANNANT00.40 AB03
2305xm0_J_DA231_DT232NANNANT00.36 BB02
2315xm0_J_DT232_DG233B-ABA0170.28 BA01
2325xm0_J_DG233_DC234A-BAB03630.27 AB03
2335xm0_J_DC234_DC235B12BB04490.37 BB04
2345xm0_J_DC235_DT236NANNANT00.40 BB04
2355xm0_J_DT236_DT237B12BB04940.19 BB04
2365xm0_J_DT237_DT238BBBBB00870.17 BB00
2375xm0_J_DT238_DT239NANNANT00.49 BA08
2385xm0_J_DT239_DG240BBBBB00220.28 BB00
2395xm0_J_DG240_DA241NANNANT00.78 BB02
2405xm0_J_DA241_DT242BBwBB02170.56 BB02
2415xm0_J_DT242_DG243BBBBB00150.40 BB00
2425xm0_J_DG243_DG244B12BB04620.19 BB04
2435xm0_J_DG244_DA245BBBBB00410.24 BB00
2445xm0_J_DA245_DG246BB2BB07790.26 BB07
2455xm0_J_DG246_DC247BBBBB00350.29 BB00
2465xm0_J_DC247_DA248NANNANT00.56 BB08
2475xm0_J_DA248_DG249BBwBB02480.45 BB02
2485xm0_J_DG249_DT250BBwBB02280.42 BB02
2495xm0_J_DT250_DT251BBBBB00650.45 BB00
2505xm0_J_DT251_DT252BBBBB00550.35 BB00
2515xm0_J_DT252_DC253miBBB13250.41 BB13
2525xm0_J_DC253_DC254NANNANT00.94 BB08
2535xm0_J_DC254_DA255BB2BB07530.35 BB07
2545xm0_J_DA255_DA256B12BB04360.24 BB04
2555xm0_J_DA256_DA257BBBBB00590.19 BB00
2565xm0_J_DA257_DT258B12BB04570.23 BB04
2575xm0_J_DT258_DA259BBBBB00500.31 BB00
2585xm0_J_DA259_DC260BBwBB02250.34 BB02
2595xm0_J_DC260_DA261BBBBB00130.49 BB00
2605xm0_J_DA261_DC262NANNANT00.74 BB02
2615xm0_J_DC262_DT263NANNANT00.31 BB03
2625xm0_J_DT263_DT264BBwBB02350.33 BB02
2635xm0_J_DT264_DT265BBwBB02110.33 BB02
2645xm0_J_DT265_DT266BBBBB00370.35 BB00
2655xm0_J_DT266_DG267BB2BB07710.32 BB07
2665xm0_J_DG267_DG268BBwBB02190.39 BB02
2675xm0_J_DG268_DT269B-ABA08200.40 BA08
2685xm0_J_DT269_DA270BBBBB00330.31 BB00
2695xm0_J_DA270_DG271B-ABA09280.38 BA09
2705xm0_J_DG271_DA272NANNANT00.41 BB03
2715xm0_J_DA272_DA273BBBBB00480.31 BB00
2725xm0_J_DA273_DT274BBBBB00720.19 BB00
2735xm0_J_DT274_DC275BBBBB00580.29 BB00
2745xm0_J_DC275_DT276BBBBB00540.31 BB00
2755xm0_J_DT276_DG277NANNANT00.55 BB08
2765xm0_J_DG277_DC278BBBBB00620.33 BB00
2775xm0_J_DC278_DA279BB2BB07530.28 BB07
2785xm0_J_DA279_DG280NANNANT00.48 BB05
2795xm0_J_DG280_DG281BBBBB00200.39 BB00
2805xm0_J_DG281_DT282NANNANT00.37 BB02
2815xm0_J_DT282_DG283NANNANT00.39 BB02
2825xm0_J_DG283_DG284NANNANT00.65 BB03
2835xm0_J_DG284_DA285miBBB13220.60 BB13
2845xm0_J_DA285_DT286BBwBB16670.43 BB16
2855xm0_J_DT286_DA287miBBB13720.30 BB13
2865xm0_J_DA287_DT288NANNANT00.50 BB16
2875xm0_J_DT288_DT289BBwBB02500.18 BB02
2885xm0_J_DT289_DG290NANNANT00.41 BB15
2895xm0_J_DG290_DA291B12BB04900.19 BB04
2905xm0_J_DA291_DT292NANNANT00.36 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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